Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008761

Physical Location & Seq

Genomic Coordinates Reverse (-)

21470898 .. 21472773

Gene Structure 1876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1221900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAAGATTTAAGGAATTCAGTTGCACCATTAAAGTCTTCATATAAACATGATCACGACTCAATGCTGGAAACAGCTCCTTCTTTTTCGATATTTAACGAAGCAAGTGAGTTTCGTGATGAAATGATTCTGAGGCAGGATTCGAAACAAGAACCACTAGGGAGGACTACTAAAGTAGGAGATAGCATAGACGTGACCTGGAGTGGAGGCTTCAGCTTTGAGAAGATGGGATGGATTGAGGAGAAAGAGGAAGAGGAAGATTTGAAGGCGATCGGGACTTTGCGCATTGATGAAGTAAAAGGACCTGCCAGTCCTCCCTTGTGTCTTGCAACAGGGCTTGGGGTTGGTGGTGCTGGTTATGGTTGTGATGCTTGGGATAATGATTTAACTACGGAAAATGTCGATGAGAGCGACAATCCCGAAGAGTATTATAAGAGGATGGTTGATGAATATCCCTGCCACCCTTTGTTCCTCAGGAAGTATGGTCAAGCTTTAGAGGCTAAGGGAGATTTCGATGGAGCTGAAGATTTCTATTTCCGTGCTACACTAGCGAATCCTGGAGATGGTGAGGCTTTATGTCAATATGCTAAGCTGGTTTGGCAGCTTCATCGTGACCAAGATAAAGCCGTGAGTTACTTTGAACGTGCAGCTCAGGCTAGTCCTCACGACATCAATATTCTTGCAGCATATGCTAGTTTTCTTTGGGAAATAGAGGATGACTCGGAAGAAGATGAAGCATGTCGTGGTCAAATTGAGATTCAGGATGTCACGGGCGATGGTGTGCCTGATACGGCAGCAGCTGGCTCAAGGAGTGACGACCCTGAGGAGAATTACAAGATGATGATTGAAGAGAACCCCAACAACGCTTTGTTGCTAAGAAATTATGCTCAGTTCTTGTGGCGGTCCAAGGGAGACCTTCAAGGTGCAGAAGAGTACTATTTGCAGGCGATACTAGCTGATCCTGGGGGCGGTGAAATCATGGCTCAATATGCAACACTGGAATGGGAACCTCATCACGACAGTAAGAGGGCACTGTCGTACTTTGAGCCTGGAAACATTGTCTTGAAAATGTGCTTCTGTATTCTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_8

Protein Analysis

364

Amino Acids

40.82

Weight (kDa)

4.34

Isoelectric Point (pI)

61.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04530
fragaria_vesca	FvH4_4g04670 FvH4_4g04670 FvH4_4g04670
malus_domestica	MD13G1221900.v1.1 MD16G1226800.v1.1
prunus_persica	Prupe.1G049000_v2.0.a1 Prupe.1G049000_v2.0.a1
pyrus_communis	pycom16g18990
rosa_chinensis	RchiOBHm_Chr4g0395481
rosa_laevigata	RLG00000009619
rosa_multiflora	Rmu_sc0001951.1_g000004 Rmu_sc0003334.1_g000007 Rmu_sc0011701.1_g000033
rosa_roxburghii	Rroxscaffold_5G00340420
rosa_rugosa	Rorug03G0355800 Rorug03G0355900
rosa_samantha	Rh4AG060500 Rh4AG062000 Rh4BG059400 Rh4CG065100 Rh4DG055400
rosa_wichuraiana	Rw4G005060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AasI	GACNNNNNNGTC	1 cut(s)	309
Acc16I	TGCGCA	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	313
AciI	CCGC	2 cut(s)	901, 969
AclWI	GGATC	1 cut(s)	953
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	2 cut(s)	196, 543
AfaI	GTAC	3 cut(s)	935, 1040, 1088
AfiI	CCNNNNNNNGG	2 cut(s)	563, 968
AgsI	TTSAA	5 cut(s)	265, 641, 848, 920, 1066
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	4 cut(s)	197, 556, 961, 1048
AluBI	AGCT	9 cut(s)	77, 216, 491, 521, 592, 604, 650, 800, 956
AluI	AGCT	9 cut(s)	77, 216, 491, 521, 592, 604, 650, 800, 956
Alw26I	GTCTC	1 cut(s)	906
AlwI	GGATC	1 cut(s)	953
AlwNI	CAGNNNCTG	1 cut(s)	800
ApeKI	GCWGC	5 cut(s)	601, 647, 683, 794, 797
ApoI	RAATTY	1 cut(s)	16
Asp700I	GAANNNNTTC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	302, 903
AsuHPI	GGTGA	2 cut(s)	578, 983
AsuII	TTCGAA	1 cut(s)	143
AvaII	GGWCC	2 cut(s)	302, 903
AxyI	CCTNAGG	2 cut(s)	473, 822
BaeGI	GKGCMC	1 cut(s)	1033
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	5 cut(s)	613, 659, 695, 806, 809
BccI	CCATC	6 cut(s)	220, 225, 433, 509, 557, 770
BceAI	ACGGC	2 cut(s)	611, 807
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BciT130I	CCWGG	4 cut(s)	199, 558, 963, 1050
BclI	TGATCA	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	906
BfaI	CTAG	5 cut(s)	158, 548, 657, 693, 953
BfuAI	ACCTGC	1 cut(s)	313
BisI	GCNGC	5 cut(s)	602, 648, 684, 795, 798
BlpI	GCTNAGC	1 cut(s)	588
BlsI	GCNGC	5 cut(s)	603, 649, 685, 796, 799
BmcAI	AGTACT	1 cut(s)	935
Bme1390I	CCNGG	4 cut(s)	199, 558, 963, 1050
Bme18I	GGWCC	2 cut(s)	302, 903
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	302, 903
BmiI	GGNNCC	1 cut(s)	1008
BmrFI	CCNGG	4 cut(s)	199, 558, 963, 1050
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	704, 736
BpmI	CTGGAG	2 cut(s)	220, 579
Bpu10I	CCTNAGC	2 cut(s)	501, 651
Bpu1102I	GCTNAGC	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	790
BsaBI	GATNNNNATC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	906
BsaJI	CCNNGG	2 cut(s)	906, 962
Bsc4I	CCNNNNNNNGG	2 cut(s)	563, 968
Bse1I	ACTGG	2 cut(s)	309, 1002
Bse21I	CCTNAGG	2 cut(s)	473, 822
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	4 cut(s)	199, 558, 963, 1050
BseDI	CCNNGG	2 cut(s)	906, 962
BseGI	GGATG	4 cut(s)	236, 444, 721, 769
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	563, 968
BseMII	CTCAG	5 cut(s)	122, 487, 665, 813, 902
BseNI	ACTGG	2 cut(s)	309, 1002
BseRI	GAGGAG	2 cut(s)	254, 839
BseSI	GKGCMC	1 cut(s)	1033
BseXI	GCAGC	5 cut(s)	613, 659, 695, 806, 809
BsgI	GTGCAG	2 cut(s)	666, 945
Bsh1285I	CGRYCG	1 cut(s)	273
BsiEI	CGRYCG	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	2 cut(s)	563, 968
BsmAI	GTCTC	1 cut(s)	906
BsmFI	GGGAC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	906
Bsp119I	TTCGAA	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	1033
Bsp143I	GATC	3 cut(s)	52, 270, 958
Bsp1720I	GCTNAGC	1 cut(s)	588
BspACI	CCGC	2 cut(s)	901, 969
BspCNI	CTCAG	5 cut(s)	123, 486, 664, 814, 901
BspLI	GGNNCC	1 cut(s)	1008
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	1 cut(s)	953
BspT104I	TTCGAA	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	906
BsrI	ACTGG	2 cut(s)	309, 1002
BssECI	CCNNGG	2 cut(s)	906, 962
BssMI	GATC	3 cut(s)	52, 270, 958
BssT1I	CCWWGG	1 cut(s)	906
Bst2UI	CCWGG	4 cut(s)	199, 558, 963, 1050
Bst4CI	ACNGT	2 cut(s)	1022, 1035
Bst6I	CTCTTC	4 cut(s)	246, 417, 843, 924
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstBI	TTCGAA	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	802, 945
BstDEI	CTNAG	8 cut(s)	131, 473, 501, 588, 651, 822, 875, 888
BstF5I	GGATG	4 cut(s)	236, 444, 721, 769
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	3 cut(s)	55, 273, 961
BstMAI	GTCTC	1 cut(s)	906
BstMBI	GATC	3 cut(s)	52, 270, 958
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	7 cut(s)	497, 548, 598, 653, 689, 953, 989
BstNI	CCWGG	4 cut(s)	199, 558, 963, 1050
BstNSI	RCATGY	1 cut(s)	741
BstSCI	CCNGG	4 cut(s)	197, 556, 961, 1048
BstSLI	GKGCMC	1 cut(s)	1033
BstV1I	GCAGC	5 cut(s)	613, 659, 695, 806, 809
BstV2I	GAAGAC	1 cut(s)	30
Bsu36I	CCTNAGG	2 cut(s)	473, 822
BtgZI	GCGATG	1 cut(s)	789
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	4 cut(s)	236, 444, 721, 769
BtsIMutI	CAGTG	2 cut(s)	995, 1031
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	802, 945
CaiI	CAGNNNCTG	1 cut(s)	800
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	2 cut(s)	302, 903
Csp6I	GTAC	3 cut(s)	934, 1039, 1087
CviAII	CATG	3 cut(s)	50, 738, 979
CviQI	GTAC	3 cut(s)	934, 1039, 1087
DdeI	CTNAG	8 cut(s)	131, 473, 501, 588, 651, 822, 875, 888
DpnI	GATC	3 cut(s)	54, 272, 960
DpnII	GATC	3 cut(s)	52, 270, 958
DrdI	GACNNNNNNGTC	1 cut(s)	309
DseDI	GACNNNNNNGTC	1 cut(s)	309
Eam1104I	CTCTTC	4 cut(s)	246, 417, 843, 924
EarI	CTCTTC	4 cut(s)	246, 417, 843, 924
Eco130I	CCWWGG	1 cut(s)	906
Eco31I	GGTCTC	1 cut(s)	906
Eco47I	GGWCC	2 cut(s)	302, 903
Eco57I	CTGAAG	2 cut(s)	196, 543
Eco81I	CCTNAGG	2 cut(s)	473, 822
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	4 cut(s)	197, 556, 961, 1048
EcoT14I	CCWWGG	1 cut(s)	906
ErhI	CCWWGG	1 cut(s)	906
FaeI	CATG	3 cut(s)	53, 741, 982
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	3 cut(s)	49, 737, 978
FauNDI	CATATG	1 cut(s)	688
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	5 cut(s)	602, 648, 684, 795, 798
FokI	GGATG	4 cut(s)	243, 451, 728, 776
Fsp4HI	GCNGC	5 cut(s)	602, 648, 684, 795, 798
FspBI	CTAG	5 cut(s)	158, 548, 657, 693, 953
FspI	TGCGCA	1 cut(s)	284
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	5 cut(s)	602, 648, 684, 795, 798
GsuI	CTGGAG	2 cut(s)	220, 579
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	3 cut(s)	53, 741, 982
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	6 cut(s)	59, 127, 140, 553, 719, 757
HphI	GGTGA	2 cut(s)	578, 983
Hpy188I	TCNGA	2 cut(s)	132, 724
HpyAV	CCTTC	3 cut(s)	90, 259, 926
HpyCH4III	ACNGT	2 cut(s)	1022, 1035
HpyCH4IV	ACGT	2 cut(s)	192, 643
HpyCH4V	TGCA	7 cut(s)	26, 329, 647, 683, 926, 943, 992
HpyF10VI	GCNNNNNNNGC	7 cut(s)	497, 548, 598, 653, 689, 953, 989
HpyF3I	CTNAG	8 cut(s)	131, 473, 501, 588, 651, 822, 875, 888
HpySE526I	ACGT	2 cut(s)	192, 643
Hsp92II	CATG	3 cut(s)	53, 741, 982
HspAI	GCGC	1 cut(s)	283
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	52, 270, 958
LmnI	GCTCC	2 cut(s)	82, 518
Lsp1109I	GCAGC	5 cut(s)	613, 659, 695, 806, 809
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	5 cut(s)	158, 548, 657, 693, 953
MaeII	ACGT	2 cut(s)	192, 643
MaeIII	GTNAC	5 cut(s)	193, 611, 632, 766, 812
MalI	GATC	3 cut(s)	54, 272, 960
MboI	GATC	3 cut(s)	52, 270, 958
MhlI	GDGCHC	1 cut(s)	1033
MluCI	AATT	4 cut(s)	16, 750, 829, 880
MlyI	GAGTC	2 cut(s)	53, 713
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	4 cut(s)	11, 32, 96, 386
MslI	CAYNNNNRTG	2 cut(s)	191, 1000
MspA1I	CMGCKG	1 cut(s)	800
MspR9I	CCNGG	4 cut(s)	199, 558, 963, 1050
MvaI	CCWGG	4 cut(s)	199, 558, 963, 1050
MwoI	GCNNNNNNNGC	7 cut(s)	497, 548, 598, 653, 689, 953, 989
NdeI	CATATG	1 cut(s)	688
NdeII	GATC	3 cut(s)	52, 270, 958
NlaIII	CATG	3 cut(s)	53, 741, 982
NlaIV	GGNNCC	1 cut(s)	1008
NmuCI	GTSAC	4 cut(s)	193, 611, 766, 812
NsbI	TGCGCA	1 cut(s)	284
NspI	RCATGY	1 cut(s)	741
NspV	TTCGAA	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	4 cut(s)	127, 140, 553, 757
PfoI	TCCNGGA	1 cut(s)	556
PkrI	GCNGC	5 cut(s)	603, 649, 685, 796, 799
Ple19I	CGATCG	1 cut(s)	273
PleI	GAGTC	2 cut(s)	53, 713
PpsI	GAGTC	2 cut(s)	53, 713
PpuMI	RGGWCCY	1 cut(s)	302
PsiI	TTATAA	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	4 cut(s)	197, 556, 961, 1048
PspGI	CCWGG	4 cut(s)	197, 556, 961, 1048
PspN4I	GGNNCC	1 cut(s)	1008
PspPI	GGNCC	2 cut(s)	302, 903
PspPPI	RGGWCCY	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	800
PvuI	CGATCG	1 cut(s)	273
PvuII	CAGCTG	1 cut(s)	800
RsaI	GTAC	3 cut(s)	935, 1040, 1088
RsaNI	GTAC	3 cut(s)	934, 1039, 1087
RseI	CAYNNNNRTG	2 cut(s)	191, 1000
SaqAI	TTAA	4 cut(s)	11, 32, 96, 386
SatI	GCNGC	5 cut(s)	602, 648, 684, 795, 798
Sau3AI	GATC	3 cut(s)	52, 270, 958
Sau96I	GGNCC	2 cut(s)	302, 903
ScaI	AGTACT	1 cut(s)	935
SchI	GAGTC	2 cut(s)	53, 713
ScrFI	CCNGG	4 cut(s)	199, 558, 963, 1050
SduI	GDGCHC	1 cut(s)	1033
SfaNI	GCATC	1 cut(s)	358
SfuI	TTCGAA	1 cut(s)	143
SinI	GGWCC	2 cut(s)	302, 903
SmiMI	CAYNNNNRTG	2 cut(s)	191, 1000
SmlI	CTYRAG	1 cut(s)	805
SmoI	CTYRAG	1 cut(s)	805
Sse9I	AATT	4 cut(s)	16, 750, 829, 880
SsiI	CCGC	2 cut(s)	901, 969
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	5 cut(s)	158, 548, 657, 693, 953
StyD4I	CCNGG	4 cut(s)	197, 556, 961, 1048
StyI	CCWWGG	1 cut(s)	906
TaaI	ACNGT	2 cut(s)	1022, 1035
TaiI	ACGT	2 cut(s)	195, 646
TaqI	TCGA	4 cut(s)	89, 143, 402, 513
TasI	AATT	4 cut(s)	16, 750, 829, 880
TatI	WGTACW	2 cut(s)	933, 1086
TfiI	GAWTC	4 cut(s)	127, 140, 553, 757
Tru1I	TTAA	4 cut(s)	11, 32, 96, 386
Tru9I	TTAA	4 cut(s)	11, 32, 96, 386
TscAI	CASTG	2 cut(s)	1002, 1038
TseFI	GTSAC	4 cut(s)	193, 611, 766, 812
TseI	GCWGC	5 cut(s)	601, 647, 683, 794, 797
Tsp45I	GTSAC	4 cut(s)	193, 611, 766, 812
TspDTI	ATGAA	6 cut(s)	30, 135, 306, 462, 596, 747
TspGWI	ACGGA	2 cut(s)	407, 527
TspRI	CASTG	2 cut(s)	1002, 1038
VpaK11BI	GGWCC	2 cut(s)	302, 903
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	1 cut(s)	741
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	5 cut(s)	158, 548, 657, 693, 953
ZrmI	AGTACT	1 cut(s)	935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.