Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008761

Physical Location & Seq

Genomic Coordinates Reverse (-)

4074389 .. 4078601

Gene Structure 4213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAAGAGCTCAAGAGTTCAGTAACACAAACACAGTCTTCACATGACCAAAATGATCCAACACTGCAGACAGCCCCATCTTTTTCGATATTTAACTCGGGTGTTGATGAGTTTCGAGATTCAAATCAGCAAGTATTGGAGAGAACTATTACAACAGAAGGTATGATAGGAGGGACTGCAATTGGTGACTTCAGATTTCGAGACAATGGTATGGGATTCATTGAGGAAGGTGAGGAGGAAGAGGATCAAGTACAACCTCCCAGTCCTCCTATGTATCTTGCAACAGGGCTTGGGTTTGAGACTGGAGGTTTTGATTTCCATGGTGTTGATGATTTTCCTATGCCAGAAATTGATGAGAACAGCGATCCTGAAGAGTATTATAAGAAGATGCTTGATGAATATCCCTGCCACCCTTTGTTCCTTGGAAATTATGCTCAAGTTTTACAGTCTAAGGGAGATTTACACGGAGCTGAAGAATACTATTTCCGCACTACACAAGCAAATCCCGAAGACGGTGAGGCTTTAGTGCAGTATGCTAAATTGGTTTGGCAGCTCCATCATGACCAAGATAGAGCCTTGAGTTACTTTGAACGTGCAGCTAGAGCTAGTCCTGAAGATAGTCATGTTCTTGCAGCATATGCTAGTTTCCTCTGGGAAATAGACAATGACCTGGAAGAAAATGAAGGAGATCAAGATCAGATTCAGGTCAACAACGGTCAAAATATGGATAAACTTGAAAACAAAGACACCAATGAAGAAATTATAAGGGGGCACTTTTCAACAGGGAATGAGATTGATGACGAGAAGAACTACAAGACCAGGATTCAAGAGAATCCCAAGAATGCTATGCTTCTAAGAAACTACGCTGAGTTCTTGTGCCAGACCAAGGGAGACCTTCAAGGTGCAGAGGAATACTATCTTCGTGCCACAGTATCTGATCCTGGTGATGGTGAGATCTTGGCACAATATGCTCAACTGGTTTGGGAACTTCATCATGACAGTAAGAAAGCATCGTCCTACTTTGAGCGAGCAGTTGAAGCTACTCCGGAAGATAGCTATGTTCTTGGGGCGTATGCTCATTTTCTCTGGGAAAACGAAGAAGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_8

Protein Analysis

370

Amino Acids

42.08

Weight (kDa)

4.25

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04530
fragaria_vesca	FvH4_4g04670 FvH4_4g04670 FvH4_4g04670
malus_domestica	MD13G1221900.v1.1 MD16G1226800.v1.1
prunus_persica	Prupe.1G049000_v2.0.a1 Prupe.1G049000_v2.0.a1
pyrus_communis	pycom16g18990
rosa_chinensis	RchiOBHm_Chr4g0395481
rosa_laevigata	RLG00000009619
rosa_multiflora	Rmu_sc0001951.1_g000004 Rmu_sc0003334.1_g000007 Rmu_sc0011701.1_g000033
rosa_roxburghii	Rroxscaffold_5G00340420
rosa_rugosa	Rorug03G0355800 Rorug03G0355900
rosa_samantha	Rh4AG060500 Rh4AG062000 Rh4BG059400 Rh4CG065100 Rh4DG055400
rosa_wichuraiana	Rw4G005060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	381, 764
AccIII	TCCGGA	1 cut(s)	1045
AciI	CCGC	1 cut(s)	487
AclWI	GGATC	4 cut(s)	50, 252, 359, 932
AcuI	CTGAAG	4 cut(s)	175, 390, 492, 633
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	3 cut(s)	512, 886, 947
AgsI	TTSAA	7 cut(s)	123, 590, 737, 780, 827, 899, 1037
AjnI	CCWGG	3 cut(s)	669, 818, 940
AluBI	AGCT	7 cut(s)	10, 470, 553, 599, 605, 1040, 1056
AluI	AGCT	7 cut(s)	10, 470, 553, 599, 605, 1040, 1056
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	3 cut(s)	195, 293, 885
AlwI	GGATC	4 cut(s)	50, 252, 359, 932
AlwNI	CAGNNNCTG	1 cut(s)	935
Ama87I	CYCGRG	1 cut(s)	97
Aor13HI	TCCGGA	1 cut(s)	1045
ApeKI	GCWGC	3 cut(s)	550, 596, 632
AsuHPI	GGTGA	5 cut(s)	197, 242, 527, 956, 962
AvaI	CYCGRG	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	774
BanII	GRGCYC	1 cut(s)	12
BbsI	GAAGAC	2 cut(s)	30, 516
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	3 cut(s)	562, 608, 644
BccI	CCATC	3 cut(s)	85, 564, 941
BciT130I	CCWGG	3 cut(s)	671, 820, 942
BcoDI	GTCTC	3 cut(s)	195, 293, 885
BfaI	CTAG	3 cut(s)	600, 606, 642
BfmI	CTRYAG	1 cut(s)	65
BglII	AGATCT	1 cut(s)	954
BisI	GCNGC	3 cut(s)	551, 597, 633
BlsI	GCNGC	3 cut(s)	552, 598, 634
Bme1390I	CCNGG	3 cut(s)	671, 820, 942
BmeT110I	CYCGRG	1 cut(s)	97
BmrFI	CCNGG	3 cut(s)	671, 820, 942
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	2 cut(s)	378, 1019
BmuI	ACTGGG	1 cut(s)	255
BpiI	GAAGAC	2 cut(s)	30, 516
BpmI	CTGGAG	1 cut(s)	324
BpuEI	CTTGAG	2 cut(s)	420, 598
BsaBI	GATNNNNATC	3 cut(s)	123, 399, 693
BsaI	GGTCTC	1 cut(s)	885
BsaJI	CCNNGG	3 cut(s)	319, 421, 885
BsaWI	WCCGGW	1 cut(s)	1045
Bsc4I	CCNNNNNNNGG	3 cut(s)	512, 886, 947
Bse1I	ACTGG	3 cut(s)	261, 307, 981
Bse8I	GATNNNNATC	3 cut(s)	123, 399, 693
BseAI	TCCGGA	1 cut(s)	1045
BseBI	CCWGG	3 cut(s)	671, 820, 942
BseDI	CCNNGG	3 cut(s)	319, 421, 885
BseJI	GATNNNNATC	3 cut(s)	123, 399, 693
BseLI	CCNNNNNNNGG	3 cut(s)	512, 886, 947
BseMII	CTCAG	1 cut(s)	858
BseNI	ACTGG	3 cut(s)	261, 307, 981
BseRI	GAGGAG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	774
BseXI	GCAGC	3 cut(s)	562, 608, 644
BsgI	GTGCAG	3 cut(s)	548, 615, 924
BsiHKAI	GWGCWC	1 cut(s)	12
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	1046
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	3 cut(s)	512, 886, 947
BsmAI	GTCTC	3 cut(s)	195, 293, 885
BsmFI	GGGAC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	847
Bso31I	GGTCTC	1 cut(s)	885
BsoBI	CYCGRG	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	12, 774
Bsp13I	TCCGGA	1 cut(s)	1045
Bsp143I	GATC	7 cut(s)	55, 244, 364, 688, 694, 937, 954
Bsp19I	CCATGG	1 cut(s)	319
BspACI	CCGC	1 cut(s)	487
BspCNI	CTCAG	1 cut(s)	859
BspEI	TCCGGA	1 cut(s)	1045
BspHI	TCATGA	2 cut(s)	559, 994
BspMAI	CTGCAG	1 cut(s)	69
BspPI	GGATC	4 cut(s)	50, 252, 359, 932
BspTNI	GGTCTC	1 cut(s)	885
BsrI	ACTGG	3 cut(s)	261, 307, 981
BssECI	CCNNGG	3 cut(s)	319, 421, 885
BssMI	GATC	7 cut(s)	55, 244, 364, 688, 694, 937, 954
BssT1I	CCWWGG	3 cut(s)	319, 421, 885
Bst2UI	CCWGG	3 cut(s)	671, 820, 942
Bst4CI	ACNGT	6 cut(s)	36, 447, 515, 716, 931, 1001
Bst6I	CTCTTC	2 cut(s)	234, 366
BstAPI	GCANNNNNTGC	2 cut(s)	638, 968
BstC8I	GCNNGC	1 cut(s)	1029
BstDEI	CTNAG	3 cut(s)	450, 854, 867
BstDSI	CCRYGG	1 cut(s)	319
BstKTI	GATC	7 cut(s)	58, 247, 367, 691, 697, 940, 957
BstMAI	GTCTC	3 cut(s)	195, 293, 885
BstMBI	GATC	7 cut(s)	55, 244, 364, 688, 694, 937, 954
BstMWI	GCNNNNNNNGC	4 cut(s)	602, 638, 968, 1037
BstNI	CCWGG	3 cut(s)	671, 820, 942
BstSCI	CCNGG	3 cut(s)	669, 818, 940
BstSFI	CTRYAG	1 cut(s)	65
BstSLI	GKGCMC	1 cut(s)	774
BstV1I	GCAGC	3 cut(s)	562, 608, 644
BstV2I	GAAGAC	2 cut(s)	30, 516
BstX2I	RGATCY	1 cut(s)	954
BstYI	RGATCY	1 cut(s)	954
BtgI	CCRYGG	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	1029
CaiI	CAGNNNCTG	1 cut(s)	935
CciI	TCATGA	2 cut(s)	559, 994
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	5 cut(s)	44, 320, 560, 623, 995
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	3 cut(s)	450, 854, 867
DpnI	GATC	7 cut(s)	57, 246, 366, 690, 696, 939, 956
DpnII	GATC	7 cut(s)	55, 244, 364, 688, 694, 937, 954
Eam1104I	CTCTTC	2 cut(s)	234, 366
EarI	CTCTTC	2 cut(s)	234, 366
Ecl136II	GAGCTC	1 cut(s)	10
Eco130I	CCWWGG	3 cut(s)	319, 421, 885
Eco24I	GRGCYC	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	885
Eco53kI	GAGCTC	1 cut(s)	10
Eco57I	CTGAAG	4 cut(s)	175, 390, 492, 633
Eco88I	CYCGRG	1 cut(s)	97
EcoICRI	GAGCTC	1 cut(s)	10
EcoRII	CCWGG	3 cut(s)	669, 818, 940
EcoT14I	CCWWGG	3 cut(s)	319, 421, 885
EcoT38I	GRGCYC	1 cut(s)	12
ErhI	CCWWGG	3 cut(s)	319, 421, 885
FaeI	CATG	5 cut(s)	47, 323, 563, 626, 998
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	5 cut(s)	43, 319, 559, 622, 994
FauNDI	CATATG	1 cut(s)	637
Fnu4HI	GCNGC	3 cut(s)	551, 597, 633
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	3 cut(s)	551, 597, 633
FspBI	CTAG	3 cut(s)	600, 606, 642
GluI	GCNGC	3 cut(s)	551, 597, 633
GsuI	CTGGAG	1 cut(s)	324
HapII	CCGG	1 cut(s)	1046
Hin1II	CATG	5 cut(s)	47, 323, 563, 626, 998
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HinfI	GANTC	5 cut(s)	119, 216, 700, 823, 832
HpaII	CCGG	1 cut(s)	1046
HphI	GGTGA	5 cut(s)	197, 242, 527, 956, 962
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	3 cut(s)	194, 699, 937
Hpy8I	GTNNAC	1 cut(s)	709
HpyAV	CCTTC	4 cut(s)	152, 221, 677, 905
HpyCH4III	ACNGT	6 cut(s)	36, 447, 515, 716, 931, 1001
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	7 cut(s)	67, 179, 281, 529, 596, 632, 905
HpyF10VI	GCNNNNNNNGC	4 cut(s)	602, 638, 968, 1037
HpyF3I	CTNAG	3 cut(s)	450, 854, 867
HpySE526I	ACGT	1 cut(s)	592
Hsp92II	CATG	5 cut(s)	47, 323, 563, 626, 998
Kpn2I	TCCGGA	1 cut(s)	1045
Kzo9I	GATC	7 cut(s)	55, 244, 364, 688, 694, 937, 954
LmnI	GCTCC	2 cut(s)	467, 558
Lsp1109I	GCAGC	3 cut(s)	562, 608, 644
LweI	GCATC	2 cut(s)	378, 1019
MaeI	CTAG	3 cut(s)	600, 606, 642
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	3 cut(s)	22, 185, 581
MalI	GATC	7 cut(s)	57, 246, 366, 690, 696, 939, 956
MboI	GATC	7 cut(s)	55, 244, 364, 688, 694, 937, 954
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	954
MhlI	GDGCHC	2 cut(s)	12, 774
MluCI	AATT	5 cut(s)	180, 348, 427, 539, 759
MmeI	TCCRAC	1 cut(s)	83
MroI	TCCGGA	1 cut(s)	1045
MseI	TTAA	1 cut(s)	93
MspI	CCGG	1 cut(s)	1046
MspR9I	CCNGG	3 cut(s)	671, 820, 942
MunI	CAATTG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	847
MvaI	CCWGG	3 cut(s)	671, 820, 942
MwoI	GCNNNNNNNGC	4 cut(s)	602, 638, 968, 1037
NcoI	CCATGG	1 cut(s)	319
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	7 cut(s)	55, 244, 364, 688, 694, 937, 954
NlaIII	CATG	5 cut(s)	47, 323, 563, 626, 998
NmuCI	GTSAC	1 cut(s)	185
PagI	TCATGA	2 cut(s)	559, 994
PctI	GAATGC	1 cut(s)	847
PfeI	GAWTC	5 cut(s)	119, 216, 700, 823, 832
PkrI	GCNGC	3 cut(s)	552, 598, 634
PsiI	TTATAA	2 cut(s)	381, 764
Psp124BI	GAGCTC	1 cut(s)	12
Psp6I	CCWGG	3 cut(s)	669, 818, 940
PspGI	CCWGG	3 cut(s)	669, 818, 940
PstI	CTGCAG	1 cut(s)	69
PstNI	CAGNNNCTG	1 cut(s)	935
PsuI	RGATCY	1 cut(s)	954
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	3 cut(s)	551, 597, 633
Sau3AI	GATC	7 cut(s)	55, 244, 364, 688, 694, 937, 954
ScrFI	CCNGG	3 cut(s)	671, 820, 942
SduI	GDGCHC	2 cut(s)	12, 774
SfaNI	GCATC	2 cut(s)	378, 1019
SfcI	CTRYAG	1 cut(s)	65
SmlI	CTYRAG	3 cut(s)	11, 435, 577
SmoI	CTYRAG	3 cut(s)	11, 435, 577
Sse9I	AATT	5 cut(s)	180, 348, 427, 539, 759
SsiI	CCGC	1 cut(s)	487
SspMI	CTAG	3 cut(s)	600, 606, 642
SstI	GAGCTC	1 cut(s)	12
StyD4I	CCNGG	3 cut(s)	669, 818, 940
StyI	CCWWGG	3 cut(s)	319, 421, 885
TaaI	ACNGT	6 cut(s)	36, 447, 515, 716, 931, 1001
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	3 cut(s)	86, 115, 199
TasI	AATT	5 cut(s)	180, 348, 427, 539, 759
TatI	WGTACW	1 cut(s)	250
TfiI	GAWTC	5 cut(s)	119, 216, 700, 823, 832
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	3 cut(s)	550, 596, 632
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	5 cut(s)	208, 411, 696, 768, 980
TspGWI	ACGGA	1 cut(s)	480
TspRI	CASTG	1 cut(s)	69
XspI	CTAG	3 cut(s)	600, 606, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.