Rorug03G0355800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0008761
Physical Location & Seq
Forward (+)
44108125 .. 44111634
3510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0355800.1

Sequence Viewer

Length: 774 bp
ATGTCTCCCTTTGAACATGGCGAGTTTTTTGTTCTTGATGATGGTGGAGAGGTATTTTACCCTTCCTCTTTACAAATAGGTGGTGAGATGAACCTGGCTGCTGGCATTCAGGTGGCTCAATTGGCCCTCAAACATCGCCAGAATAAGAAGCAACAACAAAGGATTATAGTCTTTGCTGGAAGGCTAGTTATACCAAGTTATGCTTGTGATTTCACATTATTTTTTGCCAGTTCTTGTATACTTACCCATTTTGACTTATGTGTTGCTGTCAGTGATGTTAAACATGAAAAGAAGACTTTGGAGATGATTGGAAGAAAGTTAAAGAAGAACAGTGTAGCCCTTGATATCATTAATTTTGGTGAAGAAGATGAAGAAAAGTCAGAGAAGCTAGAAGCACTTCTTGCTGCTGTGAACAATAATGACACTAGCCACATTGTTCATGTTTCGGCTGGTCCAAGTGCTCTTTCTGATGTACTCATAAGTACACCTATCTTCACTGGAGATGGAGAAGGTGGGAGTGGGATTAAGATGAAGTCTATTGTTGAAGCTTCAAAGCCGTGGCCATCGGTGAGCATGTCCAGGTGGTTACTCACGGTGAATCATGCCTTACCATTTGCCTTCGGTCTCCTTTTTGATATTTGGTTTTTGCAGCTCTTCAAATGTCTGCGCAGGAAGCTTCCAGGGGTTGACCCAAATGATCCTTCAGTAAGACACTTGCTTGCTTCTATCCAAAACCAGTCAGAGTTCTATTTGAGAGTAAGAATATCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_8

Protein Analysis

257

Amino Acids

28.5

Weight (kDa)

6.45

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA_2 PF13519 24 - 60 9.7e-06 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 668
AccI GTMKAC 1 cut(s) 238
AclWI GGATC 1 cut(s) 692
AcoI YGGCCR 1 cut(s) 560
AcuI CTGAAG 1 cut(s) 687
AfaI GTAC 2 cut(s) 474, 484
AgsI TTSAA 4 cut(s) 14, 545, 552, 658
AjnI CCWGG 3 cut(s) 93, 578, 679
AjuI GAANNNNNNNTTGG 4 cut(s) 448, 480, 685, 717
AluBI AGCT 4 cut(s) 388, 548, 652, 676
AluI AGCT 4 cut(s) 388, 548, 652, 676
Alw21I GWGCWC 1 cut(s) 463
Alw26I GTCTC 2 cut(s) 9, 629
AlwI GGATC 1 cut(s) 692
AoxI GGCC 2 cut(s) 123, 560
ApeKI GCWGC 3 cut(s) 98, 404, 649
AseI ATTAAT 1 cut(s) 351
Asp700I GAANNNNTTC 1 cut(s) 396
AspLEI GCGC 1 cut(s) 669
AspS9I GGNCC 2 cut(s) 124, 452
AsuHPI GGTGA 4 cut(s) 95, 371, 580, 607
AvaII GGWCC 1 cut(s) 452
BalI TGGCCA 1 cut(s) 562
BbsI GAAGAC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 463
BbvI GCAGC 3 cut(s) 85, 391, 661
BccI CCATC 3 cut(s) 35, 497, 571
BceAI ACGGC 1 cut(s) 541
BciT130I CCWGG 3 cut(s) 95, 580, 681
BcoDI GTCTC 2 cut(s) 9, 629
BfaI CTAG 3 cut(s) 185, 389, 426
BisI GCNGC 3 cut(s) 99, 405, 650
BlsI GCNGC 3 cut(s) 100, 406, 651
Bme1390I CCNGG 3 cut(s) 95, 580, 681
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 2 cut(s) 124, 452
BmrFI CCNGG 3 cut(s) 95, 580, 681
BpiI GAAGAC 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 519
BsaI GGTCTC 1 cut(s) 629
BsaJI CCNNGG 2 cut(s) 557, 680
Bse1I ACTGG 3 cut(s) 228, 502, 736
BseBI CCWGG 3 cut(s) 95, 580, 681
BseDI CCNNGG 2 cut(s) 557, 680
BseNI ACTGG 3 cut(s) 228, 502, 736
BseXI GCAGC 3 cut(s) 85, 391, 661
BshFI GGCC 2 cut(s) 125, 562
BsiHKAI GWGCWC 1 cut(s) 463
BsmAI GTCTC 2 cut(s) 9, 629
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 2 cut(s) 125, 562
Bso31I GGTCTC 1 cut(s) 629
Bsp1286I GDGCHC 1 cut(s) 463
Bsp143I GATC 1 cut(s) 697
BspANI GGCC 2 cut(s) 125, 562
BspPI GGATC 1 cut(s) 692
BspQI GCTCTTC 1 cut(s) 659
BspTNI GGTCTC 1 cut(s) 629
BsrI ACTGG 3 cut(s) 228, 502, 736
BssECI CCNNGG 2 cut(s) 557, 680
BssMI GATC 1 cut(s) 697
BssNAI GTATAC 1 cut(s) 239
Bst1107I GTATAC 1 cut(s) 239
Bst2UI CCWGG 3 cut(s) 95, 580, 681
Bst4CI ACNGT 2 cut(s) 332, 595
Bst6I CTCTTC 1 cut(s) 659
BstAPI GCANNNNNTGC 1 cut(s) 401
BstC8I GCNNGC 2 cut(s) 103, 720
BstDSI CCRYGG 1 cut(s) 557
BstHHI GCGC 1 cut(s) 669
BstKTI GATC 1 cut(s) 700
BstMAI GTCTC 2 cut(s) 9, 629
BstMBI GATC 1 cut(s) 697
BstMWI GCNNNNNNNGC 3 cut(s) 122, 401, 673
BstNI CCWGG 3 cut(s) 95, 580, 681
BstNSI RCATGY 1 cut(s) 577
BstSCI CCNGG 3 cut(s) 93, 578, 679
BstV1I GCAGC 3 cut(s) 85, 391, 661
BstV2I GAAGAC 1 cut(s) 299
BstZ17I GTATAC 1 cut(s) 239
BsuRI GGCC 2 cut(s) 125, 562
BtgI CCRYGG 1 cut(s) 557
BtgZI GCGATG 1 cut(s) 119
BtsIMutI CAGTG 3 cut(s) 277, 337, 495
Cac8I GCNNGC 2 cut(s) 103, 720
CfoI GCGC 1 cut(s) 669
Cfr13I GGNCC 2 cut(s) 124, 452
Csp6I GTAC 2 cut(s) 473, 483
CviAII CATG 5 cut(s) 17, 284, 440, 574, 602
CviQI GTAC 2 cut(s) 473, 483
DpnI GATC 1 cut(s) 699
DpnII GATC 1 cut(s) 697
EaeI YGGCCR 1 cut(s) 560
Eam1104I CTCTTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 659
Eco31I GGTCTC 1 cut(s) 629
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 452
Eco57I CTGAAG 1 cut(s) 687
EcoRII CCWGG 3 cut(s) 93, 578, 679
EcoRV GATATC 1 cut(s) 346
FaeI CATG 5 cut(s) 20, 287, 443, 577, 605
FalI AAGNNNNNCTT 4 cut(s) 187, 219, 384, 416
FatI CATG 5 cut(s) 16, 283, 439, 573, 601
FblI GTMKAC 1 cut(s) 238
Fnu4HI GCNGC 3 cut(s) 99, 405, 650
Fsp4HI GCNGC 3 cut(s) 99, 405, 650
FspBI CTAG 3 cut(s) 185, 389, 426
FspI TGCGCA 1 cut(s) 668
GlaI GCGC 1 cut(s) 668
GluI GCNGC 3 cut(s) 99, 405, 650
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 2 cut(s) 125, 562
HhaI GCGC 1 cut(s) 669
Hin1II CATG 5 cut(s) 20, 287, 443, 577, 605
Hin6I GCGC 1 cut(s) 667
HinP1I GCGC 1 cut(s) 667
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HindIII AAGCTT 2 cut(s) 546, 674
HinfI GANTC 1 cut(s) 598
HphI GGTGA 4 cut(s) 95, 371, 580, 607
Hpy166II GTNNAC 4 cut(s) 239, 412, 485, 688
Hpy188I TCNGA 3 cut(s) 382, 469, 742
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 4 cut(s) 239, 412, 485, 688
HpyAV CCTTC 5 cut(s) 72, 174, 503, 628, 711
HpyCH4III ACNGT 2 cut(s) 332, 595
HpyCH4V TGCA 1 cut(s) 649
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 401, 673
Hsp92II CATG 5 cut(s) 20, 287, 443, 577, 605
HspAI GCGC 1 cut(s) 667
Kzo9I GATC 1 cut(s) 697
LguI GCTCTTC 1 cut(s) 659
Lsp1109I GCAGC 3 cut(s) 85, 391, 661
MaeI CTAG 3 cut(s) 185, 389, 426
MaeIII GTNAC 1 cut(s) 585
MalI GATC 1 cut(s) 699
MboI GATC 1 cut(s) 697
MboII GAAGA 8 cut(s) 304, 324, 337, 374, 377, 383, 484, 646
MfeI CAATTG 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 463
MlsI TGGCCA 1 cut(s) 562
MluCI AATT 2 cut(s) 119, 352
MluNI TGGCCA 1 cut(s) 562
MnlI CCTC 3 cut(s) 43, 76, 137
Mox20I TGGCCA 1 cut(s) 562
MroXI GAANNNNTTC 1 cut(s) 396
MscI TGGCCA 1 cut(s) 562
MseI TTAA 4 cut(s) 279, 320, 351, 525
MslI CAYNNNNRTG 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 562
MspR9I CCNGG 3 cut(s) 95, 580, 681
MunI CAATTG 1 cut(s) 119
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 3 cut(s) 95, 580, 681
MwoI GCNNNNNNNGC 3 cut(s) 122, 401, 673
NdeII GATC 1 cut(s) 697
NlaIII CATG 5 cut(s) 20, 287, 443, 577, 605
NsbI TGCGCA 1 cut(s) 668
NspI RCATGY 1 cut(s) 577
PciSI GCTCTTC 1 cut(s) 659
PctI GAATGC 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 1 cut(s) 598
PkrI GCNGC 3 cut(s) 100, 406, 651
PshBI ATTAAT 1 cut(s) 351
Psp6I CCWGG 3 cut(s) 93, 578, 679
PspGI CCWGG 3 cut(s) 93, 578, 679
PspPI GGNCC 2 cut(s) 124, 452
RsaI GTAC 2 cut(s) 474, 484
RsaNI GTAC 2 cut(s) 473, 483
RseI CAYNNNNRTG 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 659
SaqAI TTAA 4 cut(s) 279, 320, 351, 525
SatI GCNGC 3 cut(s) 99, 405, 650
Sau3AI GATC 1 cut(s) 697
Sau96I GGNCC 2 cut(s) 124, 452
ScrFI CCNGG 3 cut(s) 95, 580, 681
SduI GDGCHC 1 cut(s) 463
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 2 cut(s) 119, 352
SspMI CTAG 3 cut(s) 185, 389, 426
StyD4I CCNGG 3 cut(s) 93, 578, 679
TaaI ACNGT 2 cut(s) 332, 595
TaqII GACCGA 1 cut(s) 611
TasI AATT 2 cut(s) 119, 352
TatI WGTACW 2 cut(s) 472, 482
TfiI GAWTC 1 cut(s) 598
Tru1I TTAA 4 cut(s) 279, 320, 351, 525
Tru9I TTAA 4 cut(s) 279, 320, 351, 525
TscAI CASTG 3 cut(s) 277, 337, 502
TseI GCWGC 3 cut(s) 98, 404, 649
TspDTI ATGAA 5 cut(s) 104, 300, 384, 428, 545
TspRI CASTG 3 cut(s) 277, 337, 502
VpaK11BI GGWCC 1 cut(s) 452
VspI ATTAAT 1 cut(s) 351
XceI RCATGY 1 cut(s) 577
XmiI GTMKAC 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 3 cut(s) 185, 389, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.