Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008761

Physical Location & Seq

Genomic Coordinates Reverse (-)

22998331 .. 23002948

Gene Structure 4618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1226800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGCACCTCAGAAGCTCATCAACCCCAGTCACTGAAACATCTTTTTCATGCAACTCTTCTTCTCCAGAATTTAATCAAGAATCCGAAAGTTTAAGCTTGGAAGGCATCCGGCGAGTTCTGTCTGATGGAAACTTAGAAGGAGGGCTAGTCTTTAGTTTTTGTGACATGGAAGAGTTTAGGAATTCAGTTGCACCATTAAAGTCTTCATATACACATGATCACAACTCAATGCTGGAAACAGCTCCTTCTTTTAATATATTTAACAAAGCAAGTGAGTTTCGTGATGAAATGATTCAGAGGCAAGATTTGAAACAAGAACCACTAGAGAGGAGTATTACAATAGGAGATAGCTTAGACGTGGCAGGGCTTGGAGGCTTCAGCTTTGAGAAGAAGATGCGATGGATTGAAGAGAAGGGTGAAGAGGAGGTGAAAGTGGAAGGTTTGAAGGCGATCCGAACTTTGCGCGTTGACGAAGAAGTAGGAAGACCTGCCAGTCCTCCCATGTATCTTGCAACAGGGCTTGGGGTTGGTGGTGCTGGTTTTGGTTGTGATGCTTGGGATAATGATTTATCTATGGAAAATGTCGACGAGAACGGCAACCCGGAAGAGTATTATAAGCGGATGGTTGATGAATATCCCTGCCACCCTTTGTTCCTTAGGAAGTATGGTCAAGCTTTAGAGGCTAAGGGAGATTTTGATGGAGCTGAAGAGTTCTATTTTCGTGCTACACTAGCAAATCCTTCGGATGGTGAGGCTTTATGTCAGTATGCTGAGCTGGTTTGGCAACTCCGTCATGACCAAGATAAAGCCTTGAGTTACTTTGAACGTGCAGCTCAAGCTAGTCCTCACGACAGCAATGTTCTTGCAGCATATGCTAGTTTTCTTTGGGAAATAGAGGATGACTCGGAAGACAATGAAGCATGTCGTGATGAGATTGAGATGCAGGATGTCATGGGCGATAGTGTGCCTGATACGGCAGCGGCTGGCTCAAGGAGTGACGACCCCGAGGAGAATTACAAGATGATGATTGAAGAGAACCCTGACAATGCTTTGTTGCTAAGAAATTATGCTCAGTTCTTGTGGCAGTCCAAAGGAGATCTTCAAGGAGCAGAGGAGCACTATTTGCGGGCAATACTAACTGATCTTGGGGACGGTGAGATCATGGCACAATATGCTACACTGGTATGGGAACTTCATCATGACAGTAAGAAGGCACTGTCGTACTTTGAGCGAGCTGTTCAAGCTAATCCTGAAGATAGCTATATTCTTGCGGCCTACGCTAATTTCCTCTGGGAACATGAAGAAGATGAGGAGGACAGCGTAACGCAAGCTCATGTCCAAGTGCCTCCTGTACAAGGAGGAGCATTGAGCGTTGGAAACGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_8

Protein Analysis

462

Amino Acids

51.72

Weight (kDa)

4.35

Isoelectric Point (pI)

64.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04530
fragaria_vesca	FvH4_4g04670 FvH4_4g04670 FvH4_4g04670
malus_domestica	MD13G1221900.v1.1 MD16G1226800.v1.1
prunus_persica	Prupe.1G049000_v2.0.a1 Prupe.1G049000_v2.0.a1
pyrus_communis	pycom16g18990
rosa_chinensis	RchiOBHm_Chr4g0395481
rosa_laevigata	RLG00000009619
rosa_multiflora	Rmu_sc0001951.1_g000004 Rmu_sc0003334.1_g000007 Rmu_sc0011701.1_g000033
rosa_roxburghii	Rroxscaffold_5G00340420
rosa_rugosa	Rorug03G0355800 Rorug03G0355900
rosa_samantha	Rh4AG060500 Rh4AG062000 Rh4BG059400 Rh4CG065100 Rh4DG055400
rosa_wichuraiana	Rw4G005060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AasI	GACNNNNNNGTC	1 cut(s)	492
Acc36I	ACCTGC	1 cut(s)	496
AccI	GTMKAC	1 cut(s)	585
AccII	CGCG	1 cut(s)	465
AciI	CCGC	4 cut(s)	619, 980, 1126, 1271
AclWI	GGATC	1 cut(s)	445
AcsI	RAATTY	2 cut(s)	68, 181
AcuI	CTGAAG	3 cut(s)	361, 726, 1272
AfaI	GTAC	2 cut(s)	1223, 1353
AfiI	CCNNNNNNNGG	2 cut(s)	746, 1355
AgsI	TTSAA	7 cut(s)	310, 407, 445, 824, 1031, 1103, 1241
AjiI	CACGTC	1 cut(s)	358
Alw21I	GWGCWC	1 cut(s)	1119
AlwI	GGATC	1 cut(s)	445
AlwNI	CAGNNNCTG	2 cut(s)	32, 983
Ama87I	CYCGRG	1 cut(s)	1004
AoxI	GGCC	1 cut(s)	1272
ApeKI	GCWGC	3 cut(s)	830, 866, 977
ApoI	RAATTY	2 cut(s)	68, 181
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	465
AsuC2I	CCSGG	1 cut(s)	602
AsuHPI	GGTGA	4 cut(s)	428, 439, 761, 1166
AvaI	CYCGRG	1 cut(s)	1004
AxyI	CCTNAGG	1 cut(s)	656
BarI	GAAGNNNNNNTAC	2 cut(s)	1176, 1208
BbsI	GAAGAC	3 cut(s)	195, 490, 915
Bbv12I	GWGCWC	1 cut(s)	1119
BbvI	GCAGC	3 cut(s)	842, 878, 989
BccI	CCATC	5 cut(s)	119, 393, 616, 692, 740
BceAI	ACGGC	2 cut(s)	610, 990
BcgI	CGANNNNNNTGC	2 cut(s)	723, 757
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	602
BfaI	CTAG	5 cut(s)	146, 323, 731, 840, 876
BfuAI	ACCTGC	1 cut(s)	496
BglII	AGATCT	1 cut(s)	1096
BisI	GCNGC	5 cut(s)	831, 867, 978, 981, 1272
BlpI	GCTNAGC	1 cut(s)	771
BlsI	GCNGC	5 cut(s)	832, 868, 979, 982, 1273
Bme1390I	CCNGG	1 cut(s)	602
BmeT110I	CYCGRG	1 cut(s)	1004
BmgBI	CACGTC	1 cut(s)	358
BmrFI	CCNGG	1 cut(s)	602
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	4 cut(s)	114, 384, 541, 930
BmuI	ACTGGG	1 cut(s)	20
BpiI	GAAGAC	3 cut(s)	195, 490, 915
BplI	GAGNNNNNCTC	2 cut(s)	887, 919
BpmI	CTGGAG	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	684
Bpu1102I	GCTNAGC	1 cut(s)	771
BpuEI	CTTGAG	3 cut(s)	819, 832, 973
BpuMI	CCSGG	1 cut(s)	602
BsaBI	GATNNNNATC	1 cut(s)	633
BsaJI	CCNNGG	1 cut(s)	1005
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	2 cut(s)	746, 1355
Bse1I	ACTGG	3 cut(s)	26, 492, 1185
Bse21I	CCTNAGG	1 cut(s)	656
Bse3DI	GCAATG	1 cut(s)	862
Bse8I	GATNNNNATC	1 cut(s)	633
BseDI	CCNNGG	1 cut(s)	1005
BseGI	GGATG	5 cut(s)	105, 627, 751, 904, 952
BseJI	GATNNNNATC	1 cut(s)	633
BseLI	CCNNNNNNNGG	2 cut(s)	746, 1355
BseMI	GCAATG	1 cut(s)	862
BseMII	CTCAG	3 cut(s)	22, 762, 1085
BseNI	ACTGG	3 cut(s)	26, 492, 1185
BseRI	GAGGAG	6 cut(s)	343, 437, 1022, 1127, 1325, 1374
BseXI	GCAGC	3 cut(s)	842, 878, 989
BsgI	GTGCAG	1 cut(s)	849
Bsh1236I	CGCG	1 cut(s)	465
BshFI	GGCC	1 cut(s)	1274
BsiHKAI	GWGCWC	1 cut(s)	1119
BsiHKCI	CYCGRG	1 cut(s)	1004
BsiSI	CCGG	2 cut(s)	109, 602
BslFI	GGGAC	1 cut(s)	1163
BslI	CCNNNNNNNGG	2 cut(s)	746, 1355
BsmFI	GGGAC	1 cut(s)	1163
BsnI	GGCC	1 cut(s)	1274
BsoBI	CYCGRG	1 cut(s)	1004
Bsp1286I	GDGCHC	1 cut(s)	1119
Bsp1407I	TGTACA	1 cut(s)	1351
Bsp143I	GATC	5 cut(s)	217, 450, 1096, 1141, 1158
Bsp1720I	GCTNAGC	1 cut(s)	771
BspACI	CCGC	4 cut(s)	619, 980, 1126, 1271
BspANI	GGCC	1 cut(s)	1274
BspCNI	CTCAG	3 cut(s)	21, 763, 1084
BspFNI	CGCG	1 cut(s)	465
BspHI	TCATGA	2 cut(s)	793, 1198
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	862
BsrGI	TGTACA	1 cut(s)	1351
BsrI	ACTGG	3 cut(s)	26, 492, 1185
BssECI	CCNNGG	1 cut(s)	1005
BssMI	GATC	5 cut(s)	217, 450, 1096, 1141, 1158
Bst4CI	ACNGT	3 cut(s)	1154, 1205, 1218
Bst6I	CTCTTC	7 cut(s)	61, 165, 402, 414, 600, 702, 1026
BstAPI	GCANNNNNTGC	3 cut(s)	872, 1123, 1172
BstAUI	TGTACA	1 cut(s)	1351
BstC8I	GCNNGC	4 cut(s)	985, 1128, 1233, 1329
BstDEI	CTNAG	8 cut(s)	8, 133, 352, 656, 684, 771, 1058, 1071
BstENI	CCTNNNNNAGG	1 cut(s)	1353
BstF5I	GGATG	5 cut(s)	105, 627, 751, 904, 952
BstFNI	CGCG	1 cut(s)	465
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	5 cut(s)	220, 453, 1099, 1144, 1161
BstMBI	GATC	5 cut(s)	217, 450, 1096, 1141, 1158
BstNSI	RCATGY	1 cut(s)	924
BstSCI	CCNGG	1 cut(s)	600
BstUI	CGCG	1 cut(s)	465
BstV1I	GCAGC	3 cut(s)	842, 878, 989
BstV2I	GAAGAC	3 cut(s)	195, 490, 915
BstX2I	RGATCY	1 cut(s)	1096
BstYI	RGATCY	1 cut(s)	1096
Bsu36I	CCTNAGG	1 cut(s)	656
BsuRI	GGCC	1 cut(s)	1274
BtgZI	GCGATG	1 cut(s)	412
BtrI	CACGTC	1 cut(s)	358
BtsCI	GGATG	5 cut(s)	105, 627, 751, 904, 952
BtsIMutI	CAGTG	3 cut(s)	30, 1178, 1214
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	4 cut(s)	985, 1128, 1233, 1329
CaiI	CAGNNNCTG	2 cut(s)	32, 983
CciI	TCATGA	2 cut(s)	793, 1198
CfoI	GCGC	1 cut(s)	465
Csp6I	GTAC	2 cut(s)	1222, 1352
CviQI	GTAC	2 cut(s)	1222, 1352
DdeI	CTNAG	8 cut(s)	8, 133, 352, 656, 684, 771, 1058, 1071
DpnI	GATC	5 cut(s)	219, 452, 1098, 1143, 1160
DpnII	GATC	5 cut(s)	217, 450, 1096, 1141, 1158
DrdI	GACNNNNNNGTC	1 cut(s)	492
DseDI	GACNNNNNNGTC	1 cut(s)	492
Eam1104I	CTCTTC	7 cut(s)	61, 165, 402, 414, 600, 702, 1026
EarI	CTCTTC	7 cut(s)	61, 165, 402, 414, 600, 702, 1026
Eco57I	CTGAAG	3 cut(s)	361, 726, 1272
Eco81I	CCTNAGG	1 cut(s)	656
Eco88I	CYCGRG	1 cut(s)	1004
EcoNI	CCTNNNNNAGG	1 cut(s)	1353
EcoRI	GAATTC	1 cut(s)	181
FalI	AAGNNNNNCTT	2 cut(s)	1083, 1115
FaqI	GGGAC	1 cut(s)	1163
FauI	CCCGC	1 cut(s)	1119
FauNDI	CATATG	1 cut(s)	871
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	585
Fnu4HI	GCNGC	5 cut(s)	831, 867, 978, 981, 1272
FokI	GGATG	5 cut(s)	92, 634, 758, 911, 959
Fsp4HI	GCNGC	5 cut(s)	831, 867, 978, 981, 1272
FspBI	CTAG	5 cut(s)	146, 323, 731, 840, 876
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	5 cut(s)	831, 867, 978, 981, 1272
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	1274
HapII	CCGG	2 cut(s)	109, 602
HhaI	GCGC	1 cut(s)	465
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	2 cut(s)	469, 586
HindII	GTYRAC	2 cut(s)	469, 586
HindIII	AAGCTT	2 cut(s)	94, 672
HinfI	GANTC	3 cut(s)	80, 292, 902
HpaII	CCGG	2 cut(s)	109, 602
HphI	GGTGA	4 cut(s)	428, 439, 761, 1166
Hpy166II	GTNNAC	2 cut(s)	469, 586
Hpy188I	TCNGA	7 cut(s)	11, 85, 124, 297, 455, 745, 907
Hpy188III	TCNNGA	8 cut(s)	65, 77, 281, 794, 848, 926, 1199, 1250
Hpy8I	GTNNAC	2 cut(s)	469, 586
Hpy99I	CGWCG	1 cut(s)	590
HpyAV	CCTTC	8 cut(s)	95, 131, 255, 406, 431, 439, 750, 1204
HpyCH4III	ACNGT	3 cut(s)	1154, 1205, 1218
HpyCH4IV	ACGT	2 cut(s)	357, 826
HpyCH4V	TGCA	7 cut(s)	4, 51, 191, 512, 830, 866, 943
HpyF3I	CTNAG	8 cut(s)	8, 133, 352, 656, 684, 771, 1058, 1071
HpySE526I	ACGT	2 cut(s)	357, 826
HspAI	GCGC	1 cut(s)	463
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	5 cut(s)	217, 450, 1096, 1141, 1158
LmnI	GCTCC	5 cut(s)	247, 701, 1106, 1114, 1361
Lsp1109I	GCAGC	3 cut(s)	842, 878, 989
LweI	GCATC	4 cut(s)	114, 384, 541, 930
MaeI	CTAG	5 cut(s)	146, 323, 731, 840, 876
MaeII	ACGT	2 cut(s)	357, 826
MaeIII	GTNAC	5 cut(s)	28, 161, 815, 995, 1321
MalI	GATC	5 cut(s)	219, 452, 1098, 1143, 1160
MboI	GATC	5 cut(s)	217, 450, 1096, 1141, 1158
MflI	RGATCY	1 cut(s)	1096
MhlI	GDGCHC	1 cut(s)	1119
MluCI	AATT	5 cut(s)	68, 181, 1012, 1063, 1282
MlyI	GAGTC	1 cut(s)	896
MmeI	TCCRAC	1 cut(s)	1354
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	5 cut(s)	72, 92, 197, 252, 261
MslI	CAYNNNNRTG	1 cut(s)	1183
MspA1I	CMGCKG	1 cut(s)	980
MspI	CCGG	2 cut(s)	109, 602
MspR9I	CCNGG	1 cut(s)	602
MvnI	CGCG	1 cut(s)	465
NciI	CCSGG	1 cut(s)	602
NdeI	CATATG	1 cut(s)	871
NdeII	GATC	5 cut(s)	217, 450, 1096, 1141, 1158
NmuCI	GTSAC	3 cut(s)	28, 161, 995
NspI	RCATGY	1 cut(s)	924
PagI	TCATGA	2 cut(s)	793, 1198
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	80, 292
PkrI	GCNGC	5 cut(s)	832, 868, 979, 982, 1273
PleI	GAGTC	1 cut(s)	896
PpsI	GAGTC	1 cut(s)	896
PsiI	TTATAA	1 cut(s)	615
PstNI	CAGNNNCTG	2 cut(s)	32, 983
PsuI	RGATCY	1 cut(s)	1096
RsaI	GTAC	2 cut(s)	1223, 1353
RsaNI	GTAC	2 cut(s)	1222, 1352
RseI	CAYNNNNRTG	1 cut(s)	1183
SalI	GTCGAC	1 cut(s)	584
SaqAI	TTAA	5 cut(s)	72, 92, 197, 252, 261
SatI	GCNGC	5 cut(s)	831, 867, 978, 981, 1272
Sau3AI	GATC	5 cut(s)	217, 450, 1096, 1141, 1158
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	1 cut(s)	602
SduI	GDGCHC	1 cut(s)	1119
SfaNI	GCATC	4 cut(s)	114, 384, 541, 930
SmiMI	CAYNNNNRTG	1 cut(s)	1183
SmlI	CTYRAG	3 cut(s)	811, 834, 988
SmoI	CTYRAG	3 cut(s)	811, 834, 988
Sse9I	AATT	5 cut(s)	68, 181, 1012, 1063, 1282
SsiI	CCGC	4 cut(s)	619, 980, 1126, 1271
SspMI	CTAG	5 cut(s)	146, 323, 731, 840, 876
StyD4I	CCNGG	1 cut(s)	600
TaaI	ACNGT	3 cut(s)	1154, 1205, 1218
TaiI	ACGT	2 cut(s)	360, 829
TaqI	TCGA	1 cut(s)	585
TasI	AATT	5 cut(s)	68, 181, 1012, 1063, 1282
TatI	WGTACW	1 cut(s)	1351
TauI	GCSGC	2 cut(s)	983, 1274
TfiI	GAWTC	2 cut(s)	80, 292
Tru1I	TTAA	5 cut(s)	72, 92, 197, 252, 261
Tru9I	TTAA	5 cut(s)	72, 92, 197, 252, 261
TscAI	CASTG	3 cut(s)	37, 1185, 1221
TseFI	GTSAC	3 cut(s)	28, 161, 995
TseI	GCWGC	3 cut(s)	830, 866, 977
Tsp45I	GTSAC	3 cut(s)	28, 161, 995
TspDTI	ATGAA	7 cut(s)	36, 195, 300, 645, 930, 1184, 1314
TspGWI	ACGGA	1 cut(s)	779
TspRI	CASTG	3 cut(s)	37, 1185, 1221
XagI	CCTNNNNNAGG	1 cut(s)	1353
XapI	RAATTY	2 cut(s)	68, 181
XceI	RCATGY	1 cut(s)	924
XmiI	GTMKAC	1 cut(s)	585
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	5 cut(s)	146, 323, 731, 840, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.