Rmu_sc0003334.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003334.1
OG0008761
Physical Location & Seq
Forward (+)
23442 .. 23954
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003334.1_g000007.1.cds

Sequence Viewer

Length: 513 bp
atggaagagcttaagagttcagtgacaccaacacagtctttagatgaccaaaacgattcaatgctgcagacagccccatctctttcgatatttaactcggatgttgatgagtttcgagaatcaaatcaacaactattggagagaactattacaatagaagatagaataggagggactcgtgacttcagatttggagacaagagtatgggattcattaaggaggaaggtgaggaggaagaagaagatcaagtacaacctcccagtcctcctatgtatcttgcaacagggcttgggtttgatactggtggttttggttttgatggtggtgatgattttcctatgccagaaattgatgagaacggcaatccggaagagtattataagaagatggttgatgaatatccctgccaccctttgttccttagaaattatgctcaagttttacaggtatacttccttcaggttgtgcttaaatttgtgattatcatattgaatcgaaggagctatgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_8

Protein Analysis

170

Amino Acids

19.49

Weight (kDa)

4.19

Isoelectric Point (pI)

63.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AccI GTMKAC 1 cut(s) 450
AccIII TCCGGA 1 cut(s) 367
AcsI RAATTY 1 cut(s) 473
AcuI CTGAAG 2 cut(s) 169, 443
AfaI GTAC 1 cut(s) 252
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 2 cut(s) 60, 493
AluBI AGCT 2 cut(s) 10, 504
AluI AGCT 2 cut(s) 10, 504
Alw26I GTCTC 1 cut(s) 189
Aor13HI TCCGGA 1 cut(s) 367
ApeKI GCWGC 1 cut(s) 64
ApoI RAATTY 1 cut(s) 473
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AsuHPI GGTGA 2 cut(s) 239, 338
BarI GAAGNNNNNNTAC 4 cut(s) 234, 266, 441, 473
BauI CACGAG 1 cut(s) 177
BbvI GCAGC 1 cut(s) 51
BccI CCATC 3 cut(s) 85, 314, 382
BceAI ACGGC 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 189
BfmI CTRYAG 1 cut(s) 65
BfrI CTTAAG 1 cut(s) 11
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
BmrI ACTGGG 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 420
BsaBI GATNNNNATC 1 cut(s) 399
BsaWI WCCGGW 1 cut(s) 367
Bse1I ACTGG 2 cut(s) 261, 307
Bse8I GATNNNNATC 1 cut(s) 399
BseAI TCCGGA 1 cut(s) 367
BseGI GGATG 1 cut(s) 106
BseJI GATNNNNATC 1 cut(s) 399
BseNI ACTGG 2 cut(s) 261, 307
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 51
BsiSI CCGG 1 cut(s) 368
BslFI GGGAC 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 187
Bsp13I TCCGGA 1 cut(s) 367
Bsp143I GATC 1 cut(s) 244
BspEI TCCGGA 1 cut(s) 367
BspMAI CTGCAG 1 cut(s) 69
BspTI CTTAAG 1 cut(s) 11
BsrI ACTGG 2 cut(s) 261, 307
BssMI GATC 1 cut(s) 244
BssNAI GTATAC 1 cut(s) 451
BssSI CACGAG 1 cut(s) 177
Bst1107I GTATAC 1 cut(s) 451
Bst2BI CACGAG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 366
BstAFI CTTAAG 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 422
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 51
BstZ17I GTATAC 1 cut(s) 451
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 27
Csp6I GTAC 1 cut(s) 251
CviJI RGCY 4 cut(s) 10, 74, 289, 504
CviKI_1 RGCY 4 cut(s) 10, 74, 289, 504
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 1 cut(s) 422
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco57I CTGAAG 2 cut(s) 169, 443
FaiI YATR 8 cut(s) 206, 272, 341, 381, 432, 451, 488, 507
FaqI GGGAC 1 cut(s) 187
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 65
HapII CCGG 1 cut(s) 368
HinfI GANTC 5 cut(s) 56, 119, 175, 210, 493
HpaII CCGG 1 cut(s) 368
HphI GGTGA 2 cut(s) 239, 338
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 2 cut(s) 100, 188
Hpy188III TCNNGA 3 cut(s) 116, 179, 368
Hpy8I GTNNAC 1 cut(s) 451
HpyAV CCTTC 3 cut(s) 218, 467, 492
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 67, 281
HpyF3I CTNAG 1 cut(s) 422
Kpn2I TCCGGA 1 cut(s) 367
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 501
LpnPI CCDG 8 cut(s) 270, 274, 288, 357, 381, 418, 431, 446
Lsp1109I GCAGC 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 22, 179
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 7 cut(s) 17, 170, 248, 251, 254, 383, 397
MluCI AATT 3 cut(s) 348, 427, 473
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 6 cut(s) 164, 214, 223, 226, 267, 276
MroI TCCGGA 1 cut(s) 367
MseI TTAA 4 cut(s) 12, 93, 216, 471
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 1 cut(s) 368
NdeII GATC 1 cut(s) 244
NmuCI GTSAC 2 cut(s) 22, 179
PfeI GAWTC 4 cut(s) 56, 119, 210, 493
PkrI GCNGC 1 cut(s) 66
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PsiI TTATAA 1 cut(s) 381
PstI CTGCAG 1 cut(s) 69
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SaqAI TTAA 4 cut(s) 12, 93, 216, 471
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 1 cut(s) 244
SchI GAGTC 1 cut(s) 169
SetI ASST 6 cut(s) 12, 229, 259, 450, 465, 506
SfcI CTRYAG 1 cut(s) 65
SmlI CTYRAG 2 cut(s) 11, 435
SmoI CTYRAG 2 cut(s) 11, 435
Sse9I AATT 3 cut(s) 348, 427, 473
TaaI ACNGT 1 cut(s) 36
TaqI TCGA 3 cut(s) 86, 115, 496
TasI AATT 3 cut(s) 348, 427, 473
TatI WGTACW 1 cut(s) 250
TfiI GAWTC 4 cut(s) 56, 119, 210, 493
Tru1I TTAA 4 cut(s) 12, 93, 216, 471
Tru9I TTAA 4 cut(s) 12, 93, 216, 471
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 2 cut(s) 22, 179
TseI GCWGC 1 cut(s) 64
Tsp45I GTSAC 2 cut(s) 22, 179
TspDTI ATGAA 2 cut(s) 202, 411
TspRI CASTG 1 cut(s) 27
Vha464I CTTAAG 1 cut(s) 11
XapI RAATTY 1 cut(s) 473
XmiI GTMKAC 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.