Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0008761

Physical Location & Seq

Genomic Coordinates Reverse (-)

12677200 .. 12682091

Gene Structure 4892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG060500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAAGAGCTTAAGAGTTCAGTGACACCAACACAGTCTTTAGATGACCAAAACGATTCAATGCTGCAGACAGCCCCATCTCTTTCGATATTTAACTCGGATGTTGATGAGTTTCGAGAATCAAATCAACAACTATTGGAGAGAACTATTACAATAGAAGATAGAATAGGAGGGACTCGTGACTTCAGATTTGGAGACAAGAGTATGGGATTCATTAAGGAGGAAGGTGAGGAGGAAGAAGAAGATCAAGTACAACCTCCCAGTCCTCCTATGTATCTTGCAACAGGGCTTGGGTTTGATACTGGTGGTTTTGGTTTTGATGGTGGTGATGATTTTCCTATGCCAGAAATTGATGAGAACGGCAATCCGGAAGAGTATTATAAGAAGATGGTTGATGAATATCCCTGCCACCCTTTGTTCCTTAGAAATTATGCTCAAGTTTTACAGTCTAAGGGAGATTTACACGGAGCTGAAGACTACTATTTCCGCTCTACACAAGCGAATCCCGAAGATGGTGAGGTTTTAGTGCAGTATGCTAAACTGGTTTGGCAGCTCCGTCATGACCAAGATAGAGCCTTGAGTTACTTTGAACGTGCAGCTCGAGCTAGTCCTGAAGATAGTCATGTTCTTGCAGCATATGCTAGTTTCCTCTGGGAAATAGACGATGACCTGGAAGAAGACGAAGCAGGTCAAGATCAGATTCAGGTCAACAATGGTCAAAATATGAATAAACTTGAAAACAAAGACACCAATGGAGAAATTATAAGGGGGCACATTTCAACAGGGAATGAGATTGATGATGAGGAGAACTACAAGACCAGGATTCAAGAGAATCCCAAGAATGCTTTGCTTCTAAGAAACTATGCTGAGTTCTTGTGCCAGACCAAGGAAGACCTTCACAGCGCAGAGGAATACTATCTGCGTGCCACAGTAGCTGATCCTAATGATGGTGAGATCTTGGCACAGTATGCTCAACTGGTTTGGGAACTTCATCATGACAGTAAGAAAGCATCGTCTTACTTTGAGCGAGCAGTTGAAGCTACTTCTGAAGATAGCTATGTTCTCGGGGCGTATGCTCATTTTCTCTGGGAAAACGAAGAAGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_8

Protein Analysis

369

Amino Acids

42.25

Weight (kDa)

4.25

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04530
fragaria_vesca	FvH4_4g04670 FvH4_4g04670 FvH4_4g04670
malus_domestica	MD13G1221900.v1.1 MD16G1226800.v1.1
prunus_persica	Prupe.1G049000_v2.0.a1 Prupe.1G049000_v2.0.a1
pyrus_communis	pycom16g18990
rosa_chinensis	RchiOBHm_Chr4g0395481
rosa_laevigata	RLG00000009619
rosa_multiflora	Rmu_sc0001951.1_g000004 Rmu_sc0003334.1_g000007 Rmu_sc0011701.1_g000033
rosa_roxburghii	Rroxscaffold_5G00340420
rosa_rugosa	Rorug03G0355800 Rorug03G0355900
rosa_samantha	Rh4AG060500 Rh4AG062000 Rh4BG059400 Rh4CG065100 Rh4DG055400
rosa_wichuraiana	Rw4G005060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	381, 764
Acc36I	ACCTGC	1 cut(s)	677
AccBSI	CCGCTC	1 cut(s)	489
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	1 cut(s)	487
AclWI	GGATC	1 cut(s)	932
AcuI	CTGAAG	4 cut(s)	169, 492, 633, 1068
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	3 cut(s)	512, 886, 947
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	6 cut(s)	60, 590, 737, 780, 827, 1037
AjnI	CCWGG	2 cut(s)	669, 818
AluBI	AGCT	8 cut(s)	10, 470, 553, 599, 605, 935, 1040, 1056
AluI	AGCT	8 cut(s)	10, 470, 553, 599, 605, 935, 1040, 1056
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	932
AlwNI	CAGNNNCTG	1 cut(s)	935
Ama87I	CYCGRG	2 cut(s)	600, 1064
Aor13HI	TCCGGA	1 cut(s)	367
ApeKI	GCWGC	4 cut(s)	64, 550, 596, 632
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
Asp700I	GAANNNNTTC	1 cut(s)	894
AspLEI	GCGC	1 cut(s)	905
AsuHPI	GGTGA	4 cut(s)	239, 338, 527, 962
AvaI	CYCGRG	2 cut(s)	600, 1064
BaeGI	GKGCMC	1 cut(s)	774
BarI	GAAGNNNNNNTAC	2 cut(s)	234, 266
BauI	CACGAG	1 cut(s)	177
BbsI	GAAGAC	3 cut(s)	480, 684, 897
BbvI	GCAGC	4 cut(s)	51, 562, 608, 644
BccI	CCATC	5 cut(s)	85, 314, 382, 506, 941
BceAI	ACGGC	1 cut(s)	376
BciT130I	CCWGG	2 cut(s)	671, 820
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	2 cut(s)	606, 642
BfmI	CTRYAG	1 cut(s)	65
BfrI	CTTAAG	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	677
BglII	AGATCT	1 cut(s)	954
BisI	GCNGC	4 cut(s)	65, 551, 597, 633
BlsI	GCNGC	4 cut(s)	66, 552, 598, 634
Bme1390I	CCNGG	2 cut(s)	671, 820
BmeT110I	CYCGRG	2 cut(s)	600, 1064
BmrFI	CCNGG	2 cut(s)	671, 820
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	1019
BmuI	ACTGGG	1 cut(s)	255
BpiI	GAAGAC	3 cut(s)	480, 684, 897
BpuEI	CTTGAG	2 cut(s)	420, 598
BsaBI	GATNNNNATC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	885
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	3 cut(s)	512, 886, 947
Bse1I	ACTGG	4 cut(s)	261, 307, 546, 981
Bse8I	GATNNNNATC	1 cut(s)	399
BseAI	TCCGGA	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	671, 820
BseDI	CCNNGG	1 cut(s)	885
BseGI	GGATG	1 cut(s)	106
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	3 cut(s)	512, 886, 947
BseMII	CTCAG	1 cut(s)	858
BseNI	ACTGG	4 cut(s)	261, 307, 546, 981
BseRI	GAGGAG	2 cut(s)	245, 818
BseSI	GKGCMC	1 cut(s)	774
BseXI	GCAGC	4 cut(s)	51, 562, 608, 644
BsgI	GTGCAG	2 cut(s)	548, 615
BsiHKCI	CYCGRG	2 cut(s)	600, 1064
BsiSI	CCGG	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	3 cut(s)	512, 886, 947
BsmAI	GTCTC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	847
BsoBI	CYCGRG	2 cut(s)	600, 1064
Bsp1286I	GDGCHC	1 cut(s)	774
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	4 cut(s)	244, 694, 937, 954
BspACI	CCGC	1 cut(s)	487
BspCNI	CTCAG	1 cut(s)	859
BspEI	TCCGGA	1 cut(s)	367
BspHI	TCATGA	2 cut(s)	559, 994
BspMAI	CTGCAG	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	677
BspPI	GGATC	1 cut(s)	932
BspTI	CTTAAG	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	489
BsrI	ACTGG	4 cut(s)	261, 307, 546, 981
BssECI	CCNNGG	1 cut(s)	885
BssMI	GATC	4 cut(s)	244, 694, 937, 954
BssSI	CACGAG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	885
Bst2BI	CACGAG	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	671, 820
Bst4CI	ACNGT	5 cut(s)	36, 447, 931, 966, 1001
Bst6I	CTCTTC	1 cut(s)	366
BstAFI	CTTAAG	1 cut(s)	11
BstAPI	GCANNNNNTGC	2 cut(s)	638, 968
BstC8I	GCNNGC	2 cut(s)	924, 1029
BstDEI	CTNAG	4 cut(s)	422, 450, 854, 867
BstF5I	GGATG	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	905
BstKTI	GATC	4 cut(s)	247, 697, 940, 957
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	4 cut(s)	244, 694, 937, 954
BstMWI	GCNNNNNNNGC	5 cut(s)	602, 638, 932, 968, 1037
BstNI	CCWGG	2 cut(s)	671, 820
BstSCI	CCNGG	2 cut(s)	669, 818
BstSFI	CTRYAG	1 cut(s)	65
BstSLI	GKGCMC	1 cut(s)	774
BstV1I	GCAGC	4 cut(s)	51, 562, 608, 644
BstV2I	GAAGAC	3 cut(s)	480, 684, 897
BstX2I	RGATCY	1 cut(s)	954
BstYI	RGATCY	1 cut(s)	954
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	677
Cac8I	GCNNGC	2 cut(s)	924, 1029
CaiI	CAGNNNCTG	1 cut(s)	935
CciI	TCATGA	2 cut(s)	559, 994
CfoI	GCGC	1 cut(s)	905
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	3 cut(s)	560, 623, 995
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	4 cut(s)	422, 450, 854, 867
DpnI	GATC	4 cut(s)	246, 696, 939, 956
DpnII	GATC	4 cut(s)	244, 694, 937, 954
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	885
Eco57I	CTGAAG	4 cut(s)	169, 492, 633, 1068
Eco88I	CYCGRG	2 cut(s)	600, 1064
EcoRII	CCWGG	2 cut(s)	669, 818
EcoT14I	CCWWGG	1 cut(s)	885
ErhI	CCWWGG	1 cut(s)	885
FaeI	CATG	3 cut(s)	563, 626, 998
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	3 cut(s)	559, 622, 994
FauNDI	CATATG	1 cut(s)	637
Fnu4HI	GCNGC	4 cut(s)	65, 551, 597, 633
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	4 cut(s)	65, 551, 597, 633
FspBI	CTAG	2 cut(s)	606, 642
GlaI	GCGC	1 cut(s)	904
GluI	GCNGC	4 cut(s)	65, 551, 597, 633
HapII	CCGG	1 cut(s)	368
HhaI	GCGC	1 cut(s)	905
Hin1II	CATG	3 cut(s)	563, 626, 998
Hin6I	GCGC	1 cut(s)	903
HinP1I	GCGC	1 cut(s)	903
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HinfI	GANTC	8 cut(s)	56, 119, 175, 210, 502, 700, 823, 832
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	4 cut(s)	239, 338, 527, 962
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	4 cut(s)	100, 188, 699, 1048
Hpy188III	TCNNGA	9 cut(s)	116, 179, 368, 506, 560, 611, 692, 827, 995
Hpy8I	GTNNAC	1 cut(s)	709
HpyAV	CCTTC	2 cut(s)	218, 905
HpyCH4III	ACNGT	5 cut(s)	36, 447, 931, 966, 1001
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	5 cut(s)	67, 281, 529, 596, 632
HpyF10VI	GCNNNNNNNGC	5 cut(s)	602, 638, 932, 968, 1037
HpyF3I	CTNAG	4 cut(s)	422, 450, 854, 867
HpySE526I	ACGT	1 cut(s)	592
Hsp92II	CATG	3 cut(s)	563, 626, 998
HspAI	GCGC	1 cut(s)	903
Kpn2I	TCCGGA	1 cut(s)	367
Kzo9I	GATC	4 cut(s)	244, 694, 937, 954
LmnI	GCTCC	2 cut(s)	467, 558
Lsp1109I	GCAGC	4 cut(s)	51, 562, 608, 644
LweI	GCATC	1 cut(s)	1019
MaeI	CTAG	2 cut(s)	606, 642
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	3 cut(s)	22, 179, 581
MalI	GATC	4 cut(s)	246, 696, 939, 956
MbiI	CCGCTC	1 cut(s)	489
MboI	GATC	4 cut(s)	244, 694, 937, 954
MflI	RGATCY	1 cut(s)	954
MhlI	GDGCHC	1 cut(s)	774
MluCI	AATT	3 cut(s)	348, 427, 759
MlyI	GAGTC	1 cut(s)	169
MroI	TCCGGA	1 cut(s)	367
MroXI	GAANNNNTTC	1 cut(s)	894
MseI	TTAA	3 cut(s)	12, 93, 216
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	2 cut(s)	671, 820
Mva1269I	GAATGC	1 cut(s)	847
MvaI	CCWGG	2 cut(s)	671, 820
MwoI	GCNNNNNNNGC	5 cut(s)	602, 638, 932, 968, 1037
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	4 cut(s)	244, 694, 937, 954
NlaIII	CATG	3 cut(s)	563, 626, 998
NmuCI	GTSAC	2 cut(s)	22, 179
PaeR7I	CTCGAG	1 cut(s)	600
PagI	TCATGA	2 cut(s)	559, 994
PcsI	WCGNNNNNNNCGW	1 cut(s)	598
PctI	GAATGC	1 cut(s)	847
PdmI	GAANNNNTTC	1 cut(s)	894
PfeI	GAWTC	7 cut(s)	56, 119, 210, 502, 700, 823, 832
PkrI	GCNGC	4 cut(s)	66, 552, 598, 634
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PsiI	TTATAA	2 cut(s)	381, 764
Psp6I	CCWGG	2 cut(s)	669, 818
PspGI	CCWGG	2 cut(s)	669, 818
PspXI	VCTCGAGB	1 cut(s)	600
PstI	CTGCAG	1 cut(s)	69
PstNI	CAGNNNCTG	1 cut(s)	935
PsuI	RGATCY	1 cut(s)	954
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SaqAI	TTAA	3 cut(s)	12, 93, 216
SatI	GCNGC	4 cut(s)	65, 551, 597, 633
Sau3AI	GATC	4 cut(s)	244, 694, 937, 954
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	2 cut(s)	671, 820
SduI	GDGCHC	1 cut(s)	774
SfaNI	GCATC	1 cut(s)	1019
SfcI	CTRYAG	1 cut(s)	65
Sfr274I	CTCGAG	1 cut(s)	600
SlaI	CTCGAG	1 cut(s)	600
SmlI	CTYRAG	4 cut(s)	11, 435, 577, 600
SmoI	CTYRAG	4 cut(s)	11, 435, 577, 600
Sse9I	AATT	3 cut(s)	348, 427, 759
SsiI	CCGC	1 cut(s)	487
SspMI	CTAG	2 cut(s)	606, 642
StyD4I	CCNGG	2 cut(s)	669, 818
StyI	CCWWGG	1 cut(s)	885
TaaI	ACNGT	5 cut(s)	36, 447, 931, 966, 1001
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	3 cut(s)	86, 115, 601
TasI	AATT	3 cut(s)	348, 427, 759
TatI	WGTACW	1 cut(s)	250
TfiI	GAWTC	7 cut(s)	56, 119, 210, 502, 700, 823, 832
Tru1I	TTAA	3 cut(s)	12, 93, 216
Tru9I	TTAA	3 cut(s)	12, 93, 216
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	2 cut(s)	22, 179
TseI	GCWGC	4 cut(s)	64, 550, 596, 632
Tsp45I	GTSAC	2 cut(s)	22, 179
TspDTI	ATGAA	4 cut(s)	202, 411, 740, 980
TspGWI	ACGGA	2 cut(s)	480, 545
TspRI	CASTG	1 cut(s)	27
Vha464I	CTTAAG	1 cut(s)	11
XhoI	CTCGAG	1 cut(s)	600
XmnI	GAANNNNTTC	1 cut(s)	894
XspI	CTAG	2 cut(s)	606, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.