Prupe.1G049000_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
3442072 .. 3446129
4058 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G049000.1

Sequence Viewer

Length: 1500 bp
ATGCTGCTCAGAAGCTCATCAACCCCAGTCATTGGAACACTCCTCTCATCCTTCTCAGACAGTCCCAATGGTGCTCATCATCGCCATTTCAACTTGACATCTTTTTCATGCAACTCTTCTTCTCCAAACTCTCATTCTGCTTCTGGGTTCATAGAGTTCAATCCAGAATCCAAAAGTTTAGGCCTCAAAGCGATTCGGCGAGCTTGGTCTGATGGAAACTTGGAAGGGTTAGTTAATAGTTCTTGTGACATGGAAGAGTTTCGAAATTCGGTTGCACCAAGAACGTCTTCTTCCTATCAAGATAACAATTCAATGCTGGAAACAGCTCCGTCTTTTTCGATATTTCACTCGGGCATTGTTGACTTTCAAGGTTCAGATCAAGAACCACTGGAGAGGGCCATTACAATAGGAGAGAACATAGAATCGGTGATGGGAGGTGGGGACTTCTGTTTTGGGAAGAAGAGTATGGGATTGATTGAGGAGAAGGGTGAAGAGGAAGAAGGTTTGGATGGGATCCAGAGTTTGCGTGTTGAAGAACAAGTACGTCCTGCAAGTCCTCCCATGTATCTTGCAGCGGGGCTTGGGGTTCAGGCTGCTGGTTTTGGTTGGGATGCTTGGGATGATGAATTATCTATGGCGAATATCGATGAGAGCGGCAATGGAGAGGAGTATTATAAGAGGATGGTTGATGAATATCCCTGCCACCCTTTGTTCCTTAGAAATTATGCTCAAGCTTTACAATCCAAGGGAGATTTCCATGGAGCTGAAGATTACTATTTGCGTGCTACACTAGCGAATCCTCAAGATGGTGAGTCTTTACTTGAGTATGCTAAGCTGGTTTGGCAGCTCCATCATGACCAAGATAGAGCCTTGAGTTACTTTGAACGTGCAGCTCAAGCTACTCCTGAAGACAGCCGTGTTCTTGGGGCATATGCTAGTTTTCTATGGGAAATAGAGGATGACCAGGAAGAAGCTGACAAGGGAGATAGTATGAATGAACTTGAAAACACTAATTCCAAAGAAGAAACTAAAAAATTTAGTCCATCCTCGCACATTGCAGCAGCAAATGGGATTGACATGCTCGATACTGCCGAAGCTGGCTCCAGAAGAGGTGATAATGCTGAGGAGAATTACAAGATGATGATTGAAGAGAATCCCAACAATGCTTTGTTGCTAAGAAATTATGCTCAGTTCTTGTGTCAGTCCAAGGGAGACCTTCAAGGAGCAGAACAATACTATTTGCGGGCCATGCAAGCTGATCCTGGGGACAGTGAAATCATGGCGCAATATGCTAAACTGGTTTGGGAACTTCGTCATGACAGTGAGAAGGCATTGTCTTACTTTCAGAGAGCCGTTCAAGCAAATCCTGAGGACAGCCATGTTCTTGCAGCATATGCTCGTTTCCTTTGGGAAGCTGAAGACGAGGAAGATACGGTAATGCAAGGCCACATTCAAGTGCCTCTCGTACAAGGAGGAACCATGAGCGCTGTGAATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

500

Amino Acids

55.35

Weight (kDa)

4.5

Isoelectric Point (pI)

61.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 675
AccB7I CCANNNNNTGG 1 cut(s) 32
AccBSI CCGCTC 1 cut(s) 654
AciI CCGC 3 cut(s) 575, 654, 1243
AclWI GGATC 3 cut(s) 508, 521, 1253
AcsI RAATTY 2 cut(s) 265, 1034
AcuI CTGAAG 3 cut(s) 786, 927, 1437
AfaI GTAC 2 cut(s) 543, 1467
AfeI AGCGCT 1 cut(s) 1486
AfiI CCNNNNNNNGG 2 cut(s) 32, 806
AjnI CCWGG 2 cut(s) 963, 1261
AjuI GAANNNNNNNTTGG 6 cut(s) 118, 150, 271, 303, 737, 769
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 1206
AlwI GGATC 3 cut(s) 508, 521, 1253
Ama87I CYCGRG 1 cut(s) 349
Aor51HI AGCGCT 1 cut(s) 1486
AoxI GGCC 4 cut(s) 181, 396, 1245, 1444
ApeKI GCWGC 8 cut(s) 4, 572, 593, 844, 890, 1058, 1061, 1388
ApoI RAATTY 2 cut(s) 265, 1034
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
Asp700I GAANNNNTTC 2 cut(s) 258, 286
AspLEI GCGC 2 cut(s) 1285, 1487
AspS9I GGNCC 2 cut(s) 396, 1245
AsuHPI GGTGA 4 cut(s) 439, 500, 821, 1124
AsuII TTCGAA 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 349
AxyI CCTNAGG 1 cut(s) 1368
BamHI GGATCC 1 cut(s) 513
BarI GAAGNNNNNNTAC 2 cut(s) 525, 557
BbsI GAAGAC 3 cut(s) 279, 915, 1425
Bbv12I GWGCWC 1 cut(s) 76
BbvCI CCTCAGC 1 cut(s) 1122
BbvI GCAGC 7 cut(s) 580, 584, 856, 902, 1070, 1073, 1400
BccI CCATC 7 cut(s) 206, 424, 503, 676, 800, 858, 1051
BceAI ACGGC 2 cut(s) 900, 1337
BciT130I CCWGG 2 cut(s) 965, 1263
BcoDI GTCTC 1 cut(s) 1206
BfaI CTAG 2 cut(s) 791, 936
BfoI RGCGCY 1 cut(s) 1488
BisI GCNGC 9 cut(s) 5, 573, 594, 655, 845, 891, 1059, 1062, 1389
BlpI GCTNAGC 1 cut(s) 831
BlsI GCNGC 9 cut(s) 6, 574, 595, 656, 846, 892, 1060, 1063, 1390
Bme1390I CCNGG 2 cut(s) 965, 1263
BmeT110I CYCGRG 1 cut(s) 349
BmgT120I GGNCC 2 cut(s) 396, 1245
BmiI GGNNCC 3 cut(s) 515, 1102, 1477
BmrFI CCNGG 2 cut(s) 965, 1263
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 1 cut(s) 601
BmuI ACTGGG 1 cut(s) 20
BpiI GAAGAC 3 cut(s) 279, 915, 1425
BpmI CTGGAG 2 cut(s) 410, 1087
Bpu10I CCTNAGC 1 cut(s) 1122
Bpu1102I GCTNAGC 1 cut(s) 831
Bpu14I TTCGAA 1 cut(s) 262
BpuEI CTTGAG 5 cut(s) 714, 786, 842, 879, 892
Bsa29I ATCGAT 1 cut(s) 645
BsaBI GATNNNNATC 1 cut(s) 693
BsaI GGTCTC 1 cut(s) 1206
BsaJI CCNNGG 4 cut(s) 744, 757, 1206, 1262
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 806
Bse1I ACTGG 3 cut(s) 26, 393, 1302
Bse21I CCTNAGG 1 cut(s) 1368
Bse3DI GCAATG 2 cut(s) 664, 1053
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 2 cut(s) 965, 1263
BseCI ATCGAT 1 cut(s) 645
BseDI CCNNGG 4 cut(s) 744, 757, 1206, 1262
BseGI GGATG 7 cut(s) 47, 514, 616, 625, 687, 964, 1043
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 2 cut(s) 32, 806
BseMI GCAATG 2 cut(s) 664, 1053
BseMII CTCAG 5 cut(s) 22, 69, 1113, 1202, 1359
BseNI ACTGG 3 cut(s) 26, 393, 1302
BseRI GAGGAG 4 cut(s) 32, 494, 680, 1139
BseXI GCAGC 7 cut(s) 580, 584, 856, 902, 1070, 1073, 1400
BsgI GTGCAG 1 cut(s) 909
BshFI GGCC 4 cut(s) 183, 398, 1247, 1446
BshVI ATCGAT 1 cut(s) 645
BsiHKAI GWGCWC 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 349
BslFI GGGAC 3 cut(s) 48, 455, 1280
BslI CCNNNNNNNGG 2 cut(s) 32, 806
BsmAI GTCTC 1 cut(s) 1206
BsmFI GGGAC 3 cut(s) 48, 455, 1280
BsmI GAATGC 1 cut(s) 1498
BsnI GGCC 4 cut(s) 183, 398, 1247, 1446
Bso31I GGTCTC 1 cut(s) 1206
BsoBI CYCGRG 1 cut(s) 349
Bsp119I TTCGAA 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 3 cut(s) 376, 513, 1258
Bsp1720I GCTNAGC 1 cut(s) 831
Bsp19I CCATGG 1 cut(s) 757
BspACI CCGC 3 cut(s) 575, 654, 1243
BspANI GGCC 4 cut(s) 183, 398, 1247, 1446
BspCNI CTCAG 5 cut(s) 21, 68, 1114, 1201, 1360
BspDI ATCGAT 1 cut(s) 645
BspHI TCATGA 2 cut(s) 853, 1315
BspLI GGNNCC 3 cut(s) 515, 1102, 1477
BspPI GGATC 3 cut(s) 508, 521, 1253
BspT104I TTCGAA 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 1206
BsrBI CCGCTC 1 cut(s) 654
BsrDI GCAATG 2 cut(s) 664, 1053
BsrI ACTGG 3 cut(s) 26, 393, 1302
BssECI CCNNGG 4 cut(s) 744, 757, 1206, 1262
BssMI GATC 3 cut(s) 376, 513, 1258
BssT1I CCWWGG 3 cut(s) 744, 757, 1206
Bst2UI CCWGG 2 cut(s) 965, 1263
Bst4CI ACNGT 4 cut(s) 62, 1271, 1322, 1435
Bst6I CTCTTC 6 cut(s) 121, 249, 455, 486, 1102, 1143
BstAPI GCANNNNNTGC 1 cut(s) 1394
BstBI TTCGAA 1 cut(s) 262
BstC8I GCNNGC 5 cut(s) 201, 783, 1099, 1245, 1254
BstDEI CTNAG 8 cut(s) 8, 55, 716, 831, 1122, 1175, 1188, 1368
BstDSI CCRYGG 1 cut(s) 757
BstF5I GGATG 7 cut(s) 47, 514, 616, 625, 687, 964, 1043
BstH2I RGCGCY 1 cut(s) 1488
BstHHI GCGC 2 cut(s) 1285, 1487
BstKTI GATC 3 cut(s) 379, 516, 1261
BstMAI GTCTC 1 cut(s) 1206
BstMBI GATC 3 cut(s) 376, 513, 1258
BstMWI GCNNNNNNNGC 9 cut(s) 791, 841, 896, 1249, 1253, 1289, 1358, 1394, 1493
BstNI CCWGG 2 cut(s) 965, 1263
BstNSI RCATGY 1 cut(s) 1081
BstSCI CCNGG 2 cut(s) 963, 1261
BstV1I GCAGC 7 cut(s) 580, 584, 856, 902, 1070, 1073, 1400
BstV2I GAAGAC 3 cut(s) 279, 915, 1425
BstX2I RGATCY 1 cut(s) 513
BstYI RGATCY 1 cut(s) 513
Bsu15I ATCGAT 1 cut(s) 645
Bsu36I CCTNAGG 1 cut(s) 1368
BsuRI GGCC 4 cut(s) 183, 398, 1247, 1446
BsuTUI ATCGAT 1 cut(s) 645
BtgI CCRYGG 1 cut(s) 757
BtgZI GCGATG 1 cut(s) 65
BtsCI GGATG 7 cut(s) 47, 514, 616, 625, 687, 964, 1043
BtsIMutI CAGTG 3 cut(s) 386, 1276, 1327
Cac8I GCNNGC 5 cut(s) 201, 783, 1099, 1245, 1254
CciI TCATGA 2 cut(s) 853, 1315
CfoI GCGC 2 cut(s) 1285, 1487
Cfr13I GGNCC 2 cut(s) 396, 1245
ClaI ATCGAT 1 cut(s) 645
Csp6I GTAC 2 cut(s) 542, 1466
CviQI GTAC 2 cut(s) 542, 1466
DdeI CTNAG 8 cut(s) 8, 55, 716, 831, 1122, 1175, 1188, 1368
DpnI GATC 3 cut(s) 378, 515, 1260
DpnII GATC 3 cut(s) 376, 513, 1258
Eam1104I CTCTTC 6 cut(s) 121, 249, 455, 486, 1102, 1143
EarI CTCTTC 6 cut(s) 121, 249, 455, 486, 1102, 1143
Eco130I CCWWGG 3 cut(s) 744, 757, 1206
Eco147I AGGCCT 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 1206
Eco47III AGCGCT 1 cut(s) 1486
Eco57I CTGAAG 3 cut(s) 786, 927, 1437
Eco81I CCTNAGG 1 cut(s) 1368
Eco88I CYCGRG 1 cut(s) 349
EcoRII CCWGG 2 cut(s) 963, 1261
EcoT14I CCWWGG 3 cut(s) 744, 757, 1206
ErhI CCWWGG 3 cut(s) 744, 757, 1206
FalI AAGNNNNNCTT 2 cut(s) 271, 303
FaqI GGGAC 3 cut(s) 48, 455, 1280
FauI CCCGC 2 cut(s) 568, 1236
FauNDI CATATG 2 cut(s) 931, 1393
Fnu4HI GCNGC 9 cut(s) 5, 573, 594, 655, 845, 891, 1059, 1062, 1389
FokI GGATG 7 cut(s) 34, 521, 623, 632, 694, 971, 1030
Fsp4HI GCNGC 9 cut(s) 5, 573, 594, 655, 845, 891, 1059, 1062, 1389
FspBI CTAG 2 cut(s) 791, 936
GlaI GCGC 2 cut(s) 1284, 1486
GluI GCNGC 9 cut(s) 5, 573, 594, 655, 845, 891, 1059, 1062, 1389
GsuI CTGGAG 2 cut(s) 410, 1087
HaeII RGCGCY 1 cut(s) 1488
HaeIII GGCC 4 cut(s) 183, 398, 1247, 1446
HhaI GCGC 2 cut(s) 1285, 1487
Hin6I GCGC 2 cut(s) 1283, 1485
HinP1I GCGC 2 cut(s) 1283, 1485
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 732
HinfI GANTC 6 cut(s) 167, 193, 422, 796, 812, 1153
HphI GGTGA 4 cut(s) 439, 500, 821, 1124
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 5 cut(s) 11, 58, 211, 376, 1347
Hpy8I GTNNAC 1 cut(s) 361
HpyAV CCTTC 6 cut(s) 61, 218, 478, 494, 1226, 1321
HpyCH4III ACNGT 4 cut(s) 62, 1271, 1322, 1435
HpyCH4IV ACGT 3 cut(s) 284, 544, 886
HpyCH4V TGCA 9 cut(s) 111, 275, 551, 572, 890, 1058, 1252, 1388, 1441
HpyF10VI GCNNNNNNNGC 9 cut(s) 791, 841, 896, 1249, 1253, 1289, 1358, 1394, 1493
HpyF3I CTNAG 8 cut(s) 8, 55, 716, 831, 1122, 1175, 1188, 1368
HpySE526I ACGT 3 cut(s) 284, 544, 886
HspAI GCGC 2 cut(s) 1283, 1485
Kzo9I GATC 3 cut(s) 376, 513, 1258
LmnI GCTCC 5 cut(s) 331, 761, 852, 1106, 1223
Lsp1109I GCAGC 7 cut(s) 580, 584, 856, 902, 1070, 1073, 1400
LweI GCATC 1 cut(s) 601
MaeI CTAG 2 cut(s) 791, 936
MaeII ACGT 3 cut(s) 284, 544, 886
MaeIII GTNAC 2 cut(s) 245, 875
MalI GATC 3 cut(s) 378, 515, 1260
MbiI CCGCTC 1 cut(s) 654
MboI GATC 3 cut(s) 376, 513, 1258
MflI RGATCY 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 8 cut(s) 265, 307, 626, 721, 1012, 1034, 1129, 1180
MlyI GAGTC 1 cut(s) 821
MroXI GAANNNNTTC 2 cut(s) 258, 286
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 2 cut(s) 1320, 1454
MspA1I CMGCKG 1 cut(s) 575
MspR9I CCNGG 2 cut(s) 965, 1263
Mva1269I GAATGC 1 cut(s) 1498
MvaI CCWGG 2 cut(s) 965, 1263
MwoI GCNNNNNNNGC 9 cut(s) 791, 841, 896, 1249, 1253, 1289, 1358, 1394, 1493
NcoI CCATGG 1 cut(s) 757
NdeI CATATG 2 cut(s) 931, 1393
NdeII GATC 3 cut(s) 376, 513, 1258
NlaIV GGNNCC 3 cut(s) 515, 1102, 1477
NmuCI GTSAC 1 cut(s) 245
NspI RCATGY 1 cut(s) 1081
NspV TTCGAA 1 cut(s) 262
PagI TCATGA 2 cut(s) 853, 1315
PceI AGGCCT 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 1089
PctI GAATGC 1 cut(s) 1498
PdmI GAANNNNTTC 2 cut(s) 258, 286
PfeI GAWTC 5 cut(s) 167, 193, 422, 796, 1153
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 9 cut(s) 6, 574, 595, 656, 846, 892, 1060, 1063, 1390
PleI GAGTC 1 cut(s) 820
PpsI GAGTC 1 cut(s) 820
PsiI TTATAA 1 cut(s) 675
Psp6I CCWGG 2 cut(s) 963, 1261
PspGI CCWGG 2 cut(s) 963, 1261
PspN4I GGNNCC 3 cut(s) 515, 1102, 1477
PspPI GGNCC 2 cut(s) 396, 1245
PsuI RGATCY 1 cut(s) 513
RsaI GTAC 2 cut(s) 543, 1467
RsaNI GTAC 2 cut(s) 542, 1466
RseI CAYNNNNRTG 2 cut(s) 1320, 1454
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 9 cut(s) 5, 573, 594, 655, 845, 891, 1059, 1062, 1389
Sau3AI GATC 3 cut(s) 376, 513, 1258
Sau96I GGNCC 2 cut(s) 396, 1245
SchI GAGTC 1 cut(s) 821
ScrFI CCNGG 2 cut(s) 965, 1263
SduI GDGCHC 1 cut(s) 76
SfaNI GCATC 1 cut(s) 601
SfuI TTCGAA 1 cut(s) 262
SmiMI CAYNNNNRTG 2 cut(s) 1320, 1454
SmlI CTYRAG 5 cut(s) 729, 801, 821, 871, 894
SmoI CTYRAG 5 cut(s) 729, 801, 821, 871, 894
Sse9I AATT 8 cut(s) 265, 307, 626, 721, 1012, 1034, 1129, 1180
SseBI AGGCCT 1 cut(s) 183
SsiI CCGC 3 cut(s) 575, 654, 1243
SspMI CTAG 2 cut(s) 791, 936
StuI AGGCCT 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 963, 1261
StyI CCWWGG 3 cut(s) 744, 757, 1206
TaaI ACNGT 4 cut(s) 62, 1271, 1322, 1435
TaiI ACGT 3 cut(s) 287, 547, 889
TaqI TCGA 4 cut(s) 262, 338, 645, 1083
TasI AATT 8 cut(s) 265, 307, 626, 721, 1012, 1034, 1129, 1180
TauI GCSGC 1 cut(s) 657
TfiI GAWTC 5 cut(s) 167, 193, 422, 796, 1153
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 3 cut(s) 393, 1276, 1327
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 8 cut(s) 4, 572, 593, 844, 890, 1058, 1061, 1388
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 6 cut(s) 96, 139, 639, 705, 1007, 1011
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 3 cut(s) 393, 1276, 1327
Van91I CCANNNNNTGG 1 cut(s) 32
XapI RAATTY 2 cut(s) 265, 1034
XceI RCATGY 1 cut(s) 1081
XmnI GAANNNNTTC 2 cut(s) 258, 286
XspI CTAG 2 cut(s) 791, 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.