Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011701.1

Orthogroup ID

OG0008761

Physical Location & Seq

Genomic Coordinates Reverse (-)

111548 .. 113863

Gene Structure 2316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011701.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgcatcacaaccagtggttgtggcaggccggggaagcatgtagcctaggatctaagggagatttacacggagctgaagactactatttccgctctacacaagcaaatcccgaagatggtgaggttttagtgcagtatgctaaactggtttggcagctccgtcatgaccaagatagagccttgagttactttgaacgtgcagctcgagctagtcctgaagatagtcatgttcttgcagcgtatgctagtttcctctgggaaatagacgatgacctggaagaagacgaagcaggtcaagatcagattcaggtcaacaatggtcaaaatatgaataaacttgaaaacaaagacaccaatggagaaattataagggggcacatttcaacagggaatgagattgatgatgaggagaactacaagaccaggattcaagagaatcccaagaatgctttgcttctaagaaactatgctgagttcttgtgccagaccaagggagaccttcacagcgcagaggaatactatctgcgtgccacagtagctgatcctaatgatggtgagatcttggcacagtatgctcaactggtttgggaacttcatcatgacagtaagaaagcatcgtcttactttgagcgagcagttgaagctacttctgaagatagctatgttcttggggcgtatgctcattttctctgggaaaacgaagaagatgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_8

Protein Analysis

237

Amino Acids

27.22

Weight (kDa)

4.48

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04530
fragaria_vesca	FvH4_4g04670 FvH4_4g04670 FvH4_4g04670
malus_domestica	MD13G1221900.v1.1 MD16G1226800.v1.1
prunus_persica	Prupe.1G049000_v2.0.a1 Prupe.1G049000_v2.0.a1
pyrus_communis	pycom16g18990
rosa_chinensis	RchiOBHm_Chr4g0395481
rosa_laevigata	RLG00000009619
rosa_multiflora	Rmu_sc0001951.1_g000004 Rmu_sc0003334.1_g000007 Rmu_sc0011701.1_g000033
rosa_roxburghii	Rroxscaffold_5G00340420
rosa_rugosa	Rorug03G0355800 Rorug03G0355900
rosa_samantha	Rh4AG060500 Rh4AG062000 Rh4BG059400 Rh4CG065100 Rh4DG055400
rosa_wichuraiana	Rw4G005060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
Acc36I	ACCTGC	1 cut(s)	281
AccBSI	CCGCTC	1 cut(s)	93
AciI	CCGC	1 cut(s)	91
AclWI	GGATC	2 cut(s)	58, 536
AcuI	CTGAAG	3 cut(s)	96, 237, 672
AfiI	CCNNNNNNNGG	3 cut(s)	116, 490, 551
AgsI	TTSAA	5 cut(s)	194, 341, 384, 431, 641
AjnI	CCWGG	2 cut(s)	273, 422
AluBI	AGCT	7 cut(s)	74, 157, 203, 209, 539, 644, 660
AluI	AGCT	7 cut(s)	74, 157, 203, 209, 539, 644, 660
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	2 cut(s)	58, 536
AlwNI	CAGNNNCTG	1 cut(s)	539
Ama87I	CYCGRG	1 cut(s)	204
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	3 cut(s)	154, 200, 236
AspA2I	CCTAGG	1 cut(s)	46
AspLEI	GCGC	1 cut(s)	509
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	131, 566
AvaI	CYCGRG	1 cut(s)	204
AvrII	CCTAGG	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	378
BbsI	GAAGAC	2 cut(s)	84, 288
BbvI	GCAGC	3 cut(s)	166, 212, 248
BccI	CCATC	2 cut(s)	110, 545
BciT130I	CCWGG	2 cut(s)	275, 424
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	3 cut(s)	47, 210, 246
BfuAI	ACCTGC	1 cut(s)	281
BglII	AGATCT	1 cut(s)	558
BisI	GCNGC	3 cut(s)	155, 201, 237
BlnI	CCTAGG	1 cut(s)	46
BlsI	GCNGC	3 cut(s)	156, 202, 238
Bme1390I	CCNGG	3 cut(s)	31, 275, 424
BmeT110I	CYCGRG	1 cut(s)	204
BmrFI	CCNGG	3 cut(s)	31, 275, 424
BmsI	GCATC	2 cut(s)	13, 623
BpiI	GAAGAC	2 cut(s)	84, 288
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	31
BsaI	GGTCTC	1 cut(s)	489
BsaJI	CCNNGG	3 cut(s)	30, 46, 489
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 490, 551
Bse1I	ACTGG	3 cut(s)	13, 150, 585
BseBI	CCWGG	2 cut(s)	275, 424
BseDI	CCNNGG	3 cut(s)	30, 46, 489
BseLI	CCNNNNNNNGG	3 cut(s)	116, 490, 551
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	3 cut(s)	13, 150, 585
BseRI	GAGGAG	1 cut(s)	422
BseSI	GKGCMC	1 cut(s)	378
BseXI	GCAGC	3 cut(s)	166, 212, 248
BsgI	GTGCAG	2 cut(s)	152, 219
BshFI	GGCC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	3 cut(s)	116, 490, 551
BsmAI	GTCTC	1 cut(s)	489
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	1 cut(s)	29
Bso31I	GGTCTC	1 cut(s)	489
BsoBI	CYCGRG	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	4 cut(s)	50, 298, 541, 558
BspACI	CCGC	1 cut(s)	91
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	463
BspHI	TCATGA	2 cut(s)	163, 598
BspMI	ACCTGC	1 cut(s)	281
BspPI	GGATC	2 cut(s)	58, 536
BspTNI	GGTCTC	1 cut(s)	489
BsrBI	CCGCTC	1 cut(s)	93
BsrI	ACTGG	3 cut(s)	13, 150, 585
BssECI	CCNNGG	3 cut(s)	30, 46, 489
BssMI	GATC	4 cut(s)	50, 298, 541, 558
BssT1I	CCWWGG	2 cut(s)	46, 489
Bst2UI	CCWGG	2 cut(s)	275, 424
Bst4CI	ACNGT	3 cut(s)	535, 570, 605
BstAPI	GCANNNNNTGC	2 cut(s)	242, 572
BstC8I	GCNNGC	3 cut(s)	27, 528, 633
BstDEI	CTNAG	3 cut(s)	54, 458, 471
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	4 cut(s)	53, 301, 544, 561
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	4 cut(s)	50, 298, 541, 558
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 206, 242, 536, 572, 641
BstNI	CCWGG	2 cut(s)	275, 424
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	3 cut(s)	29, 273, 422
BstSLI	GKGCMC	1 cut(s)	378
BstV1I	GCAGC	3 cut(s)	166, 212, 248
BstV2I	GAAGAC	2 cut(s)	84, 288
BstX2I	RGATCY	2 cut(s)	50, 558
BstYI	RGATCY	2 cut(s)	50, 558
BsuRI	GGCC	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	20
BveI	ACCTGC	1 cut(s)	281
Cac8I	GCNNGC	3 cut(s)	27, 528, 633
CaiI	CAGNNNCTG	1 cut(s)	539
CciI	TCATGA	2 cut(s)	163, 598
CfoI	GCGC	1 cut(s)	509
CviAII	CATG	4 cut(s)	39, 164, 227, 599
DdeI	CTNAG	3 cut(s)	54, 458, 471
DpnI	GATC	4 cut(s)	52, 300, 543, 560
DpnII	GATC	4 cut(s)	50, 298, 541, 558
Eco130I	CCWWGG	2 cut(s)	46, 489
Eco31I	GGTCTC	1 cut(s)	489
Eco57I	CTGAAG	3 cut(s)	96, 237, 672
Eco88I	CYCGRG	1 cut(s)	204
EcoRII	CCWGG	2 cut(s)	273, 422
EcoT14I	CCWWGG	2 cut(s)	46, 489
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	46, 489
FaeI	CATG	4 cut(s)	42, 167, 230, 602
FatI	CATG	4 cut(s)	38, 163, 226, 598
Fnu4HI	GCNGC	3 cut(s)	155, 201, 237
Fsp4HI	GCNGC	3 cut(s)	155, 201, 237
FspBI	CTAG	3 cut(s)	47, 210, 246
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	3 cut(s)	155, 201, 237
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	30
HhaI	GCGC	1 cut(s)	509
Hin1II	CATG	4 cut(s)	42, 167, 230, 602
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	3 cut(s)	304, 427, 436
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	2 cut(s)	131, 566
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	303, 652
Hpy188III	TCNNGA	6 cut(s)	110, 164, 215, 296, 431, 599
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	1 cut(s)	509
HpyCH4III	ACNGT	3 cut(s)	535, 570, 605
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	4, 133, 200, 236
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 206, 242, 536, 572, 641
HpyF3I	CTNAG	3 cut(s)	54, 458, 471
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	4 cut(s)	42, 167, 230, 602
HspAI	GCGC	1 cut(s)	507
Kzo9I	GATC	4 cut(s)	50, 298, 541, 558
LmnI	GCTCC	2 cut(s)	71, 162
Lsp1109I	GCAGC	3 cut(s)	166, 212, 248
LweI	GCATC	2 cut(s)	13, 623
MaeI	CTAG	3 cut(s)	47, 210, 246
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	4 cut(s)	52, 300, 543, 560
MbiI	CCGCTC	1 cut(s)	93
MboI	GATC	4 cut(s)	50, 298, 541, 558
MboII	GAAGA	7 cut(s)	89, 125, 230, 290, 293, 665, 713
MflI	RGATCY	2 cut(s)	50, 558
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	1 cut(s)	363
MnlI	CCTC	4 cut(s)	115, 263, 400, 505
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	3 cut(s)	31, 275, 424
Mva1269I	GAATGC	1 cut(s)	451
MvaI	CCWGG	2 cut(s)	275, 424
MwoI	GCNNNNNNNGC	6 cut(s)	35, 206, 242, 536, 572, 641
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	4 cut(s)	50, 298, 541, 558
NlaIII	CATG	4 cut(s)	42, 167, 230, 602
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	42
PaeR7I	CTCGAG	1 cut(s)	204
PagI	TCATGA	2 cut(s)	163, 598
PcsI	WCGNNNNNNNCGW	1 cut(s)	202
PctI	GAATGC	1 cut(s)	451
PfeI	GAWTC	3 cut(s)	304, 427, 436
PkrI	GCNGC	3 cut(s)	156, 202, 238
PsiI	TTATAA	1 cut(s)	368
Psp6I	CCWGG	2 cut(s)	273, 422
PspGI	CCWGG	2 cut(s)	273, 422
PspXI	VCTCGAGB	1 cut(s)	204
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	2 cut(s)	50, 558
SatI	GCNGC	3 cut(s)	155, 201, 237
Sau3AI	GATC	4 cut(s)	50, 298, 541, 558
ScrFI	CCNGG	3 cut(s)	31, 275, 424
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	2 cut(s)	13, 623
Sfr274I	CTCGAG	1 cut(s)	204
SlaI	CTCGAG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	181, 204
SmoI	CTYRAG	2 cut(s)	181, 204
Sse9I	AATT	1 cut(s)	363
SsiI	CCGC	1 cut(s)	91
SspMI	CTAG	3 cut(s)	47, 210, 246
StyD4I	CCNGG	3 cut(s)	29, 273, 422
StyI	CCWWGG	2 cut(s)	46, 489
TaaI	ACNGT	3 cut(s)	535, 570, 605
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	205
TasI	AATT	1 cut(s)	363
TfiI	GAWTC	3 cut(s)	304, 427, 436
TscAI	CASTG	1 cut(s)	20
TseI	GCWGC	3 cut(s)	154, 200, 236
TspDTI	ATGAA	2 cut(s)	344, 584
TspGWI	ACGGA	2 cut(s)	84, 149
TspRI	CASTG	1 cut(s)	20
XceI	RCATGY	1 cut(s)	42
XhoI	CTCGAG	1 cut(s)	204
XmaJI	CCTAGG	1 cut(s)	46
XspI	CTAG	3 cut(s)	47, 210, 246
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.