Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008761

Physical Location & Seq

Genomic Coordinates Forward (+)

55464002 .. 55467146

Gene Structure 3145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009619

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAAGAGCTTAAGAGTTCAGTGACACCAACACAGTCTTCAGATGACCAAAACGATTCAACGCTGCAGACAGCCCCTTCTCTTTCGATATTTAACTCGGGTGTTGATGAGTTTCGAGAATCAAATCAACAACTATTGGAGAGAACTTTTACAATAGAAGATAGAATAGGAGGGACTCATGACTTCAGATTTGGAGACAAGAGTATGGGATTCATTAAGGAGGAAGGTGAGGAGGAAGAAGAAGGTCAAGGACAACCTCCCAGTCCTCCTATGTATCTTGCAACAGGGCTTGGGTTTGATACTGGTGGTTTTGGTTTTCACGGTGTTGATGATTTTCCTATGCCAGAAATTGATGAGAACGGCGATCCGGAAGAGTATTATAAGAAGATGGTTGATGAATATCCCTGCCACCCTTTGTTCCTTAGAAATTATGCTCAGGTTTTACAGTCTAAGGGAGATTTACACGGAGCTGAAGACTACTATTTCCGCTCTACACAAGCGAATCCCGAAGATGGTGAGGTTTTAGTGCAGTATGCTAAACTGGTTTGGCAGCTCCGTCATGACCAAGATAGAGCCTTGAATTACTTTGAACGTGCAGCTCGAGCTAGTCCTGAAGATAGTCATGTTCTTGCAGCATATGCTAGTTTCCTCTGGGAAATAGACGATGACCTGGAAGAAGACGAAGCAGGTCAAGATCAGATTCAGGTCAACAATGGTCAAAATATGAATAAACTTGAAAACAGAGACACCAATGAAGAAATTATAAGGGGGCACATTTCAACAGGGAATGAGATTGATGCTGAGGAGAACTACAAGACCAGGATTCAAGAGAATCCCAAGAATGCTTTGCTTCTAAGAAACTACGCTGAGTTCTTGTGCCAGACCAAAGGAGACCTTCACGGTGCGGAGGAATATTATCTGCGTGCCACAGTAGCTGATCCTAATGATGGTGAGATCTTGGCACAGTATGCTCAACTGGTTTGGGAACTTCATCATGACAGTAAGAAAGCATCGTCTTACTTTGAGCGAGCAGTTGAAGCTACTTCTGAAGATAGCTATATTCTTGGGGCGTATGCTCATTTTCTCTGGGAAAACGAAGAAGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_8

Protein Analysis

370

Amino Acids

42.11

Weight (kDa)

4.31

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04530
fragaria_vesca	FvH4_4g04670 FvH4_4g04670 FvH4_4g04670
malus_domestica	MD13G1221900.v1.1 MD16G1226800.v1.1
prunus_persica	Prupe.1G049000_v2.0.a1 Prupe.1G049000_v2.0.a1
pyrus_communis	pycom16g18990
rosa_chinensis	RchiOBHm_Chr4g0395481
rosa_laevigata	RLG00000009619
rosa_multiflora	Rmu_sc0001951.1_g000004 Rmu_sc0003334.1_g000007 Rmu_sc0011701.1_g000033
rosa_roxburghii	Rroxscaffold_5G00340420
rosa_rugosa	Rorug03G0355800 Rorug03G0355900
rosa_samantha	Rh4AG060500 Rh4AG062000 Rh4BG059400 Rh4CG065100 Rh4DG055400
rosa_wichuraiana	Rw4G005060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	381, 764
Acc36I	ACCTGC	1 cut(s)	677
AccBSI	CCGCTC	1 cut(s)	489
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	2 cut(s)	487, 905
AclWI	GGATC	2 cut(s)	359, 932
AcuI	CTGAAG	5 cut(s)	24, 169, 492, 633, 1068
AfiI	CCNNNNNNNGG	2 cut(s)	512, 947
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	7 cut(s)	60, 580, 590, 737, 780, 827, 1037
AjnI	CCWGG	2 cut(s)	669, 818
AjuI	GAANNNNNNNTTGG	2 cut(s)	22, 54
AluBI	AGCT	8 cut(s)	10, 470, 553, 599, 605, 935, 1040, 1056
AluI	AGCT	8 cut(s)	10, 470, 553, 599, 605, 935, 1040, 1056
Alw26I	GTCTC	3 cut(s)	189, 738, 885
AlwI	GGATC	2 cut(s)	359, 932
AlwNI	CAGNNNCTG	1 cut(s)	935
Ama87I	CYCGRG	2 cut(s)	97, 600
Aor13HI	TCCGGA	1 cut(s)	367
ApeKI	GCWGC	4 cut(s)	64, 550, 596, 632
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AsuHPI	GGTGA	3 cut(s)	239, 527, 962
AvaI	CYCGRG	2 cut(s)	97, 600
BaeGI	GKGCMC	1 cut(s)	774
BbsI	GAAGAC	3 cut(s)	30, 480, 684
BbvCI	CCTCAGC	1 cut(s)	801
BbvI	GCAGC	4 cut(s)	51, 562, 608, 644
BccI	CCATC	3 cut(s)	382, 506, 941
BceAI	ACGGC	1 cut(s)	376
BciT130I	CCWGG	2 cut(s)	671, 820
BcoDI	GTCTC	3 cut(s)	189, 738, 885
BfaI	CTAG	2 cut(s)	606, 642
BfmI	CTRYAG	1 cut(s)	65
BfrI	CTTAAG	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	677
BglII	AGATCT	1 cut(s)	954
BisI	GCNGC	4 cut(s)	65, 551, 597, 633
BlsI	GCNGC	4 cut(s)	66, 552, 598, 634
Bme1390I	CCNGG	2 cut(s)	671, 820
BmeT110I	CYCGRG	2 cut(s)	97, 600
BmrFI	CCNGG	2 cut(s)	671, 820
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	2 cut(s)	787, 1019
BmuI	ACTGGG	1 cut(s)	255
BpiI	GAAGAC	3 cut(s)	30, 480, 684
Bpu10I	CCTNAGC	2 cut(s)	435, 801
BsaBI	GATNNNNATC	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	885
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 947
Bse1I	ACTGG	4 cut(s)	261, 307, 546, 981
Bse8I	GATNNNNATC	1 cut(s)	399
BseAI	TCCGGA	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	671, 820
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	512, 947
BseMII	CTCAG	3 cut(s)	449, 792, 858
BseNI	ACTGG	4 cut(s)	261, 307, 546, 981
BseRI	GAGGAG	2 cut(s)	245, 818
BseSI	GKGCMC	1 cut(s)	774
BseXI	GCAGC	4 cut(s)	51, 562, 608, 644
BsgI	GTGCAG	2 cut(s)	548, 615
BsiHKCI	CYCGRG	2 cut(s)	97, 600
BsiSI	CCGG	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	2 cut(s)	512, 947
BsmAI	GTCTC	3 cut(s)	189, 738, 885
BsmFI	GGGAC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	847
Bso31I	GGTCTC	1 cut(s)	885
BsoBI	CYCGRG	2 cut(s)	97, 600
Bsp1286I	GDGCHC	1 cut(s)	774
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	4 cut(s)	364, 694, 937, 954
BspACI	CCGC	2 cut(s)	487, 905
BspCNI	CTCAG	3 cut(s)	448, 793, 859
BspEI	TCCGGA	1 cut(s)	367
BspHI	TCATGA	3 cut(s)	178, 559, 994
BspMAI	CTGCAG	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	677
BspPI	GGATC	2 cut(s)	359, 932
BspTI	CTTAAG	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	885
BsrBI	CCGCTC	1 cut(s)	489
BsrI	ACTGG	4 cut(s)	261, 307, 546, 981
BssMI	GATC	4 cut(s)	364, 694, 937, 954
Bst2UI	CCWGG	2 cut(s)	671, 820
Bst4CI	ACNGT	7 cut(s)	36, 323, 447, 902, 931, 966, 1001
Bst6I	CTCTTC	1 cut(s)	366
BstAFI	CTTAAG	1 cut(s)	11
BstAPI	GCANNNNNTGC	2 cut(s)	638, 968
BstC8I	GCNNGC	2 cut(s)	924, 1029
BstDEI	CTNAG	6 cut(s)	422, 435, 450, 801, 854, 867
BstKTI	GATC	4 cut(s)	367, 697, 940, 957
BstMAI	GTCTC	3 cut(s)	189, 738, 885
BstMBI	GATC	4 cut(s)	364, 694, 937, 954
BstMWI	GCNNNNNNNGC	5 cut(s)	602, 638, 932, 968, 1037
BstNI	CCWGG	2 cut(s)	671, 820
BstSCI	CCNGG	2 cut(s)	669, 818
BstSFI	CTRYAG	1 cut(s)	65
BstSLI	GKGCMC	1 cut(s)	774
BstV1I	GCAGC	4 cut(s)	51, 562, 608, 644
BstV2I	GAAGAC	3 cut(s)	30, 480, 684
BstX2I	RGATCY	1 cut(s)	954
BstYI	RGATCY	1 cut(s)	954
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	677
Cac8I	GCNNGC	2 cut(s)	924, 1029
CaiI	CAGNNNCTG	1 cut(s)	935
CciI	TCATGA	3 cut(s)	178, 559, 994
CviAII	CATG	4 cut(s)	179, 560, 623, 995
DdeI	CTNAG	6 cut(s)	422, 435, 450, 801, 854, 867
DpnI	GATC	4 cut(s)	366, 696, 939, 956
DpnII	GATC	4 cut(s)	364, 694, 937, 954
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	885
Eco57I	CTGAAG	5 cut(s)	24, 169, 492, 633, 1068
Eco88I	CYCGRG	2 cut(s)	97, 600
EcoRII	CCWGG	2 cut(s)	669, 818
FaeI	CATG	4 cut(s)	182, 563, 626, 998
FalI	AAGNNNNNCTT	2 cut(s)	879, 911
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	4 cut(s)	178, 559, 622, 994
FauNDI	CATATG	1 cut(s)	637
Fnu4HI	GCNGC	4 cut(s)	65, 551, 597, 633
Fsp4HI	GCNGC	4 cut(s)	65, 551, 597, 633
FspBI	CTAG	2 cut(s)	606, 642
GluI	GCNGC	4 cut(s)	65, 551, 597, 633
HapII	CCGG	1 cut(s)	368
Hin1II	CATG	4 cut(s)	182, 563, 626, 998
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HinfI	GANTC	8 cut(s)	56, 119, 175, 210, 502, 700, 823, 832
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	3 cut(s)	239, 527, 962
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	4 cut(s)	43, 188, 699, 1048
Hpy188III	TCNNGA	9 cut(s)	116, 179, 368, 506, 560, 611, 692, 827, 995
Hpy8I	GTNNAC	1 cut(s)	709
HpyAV	CCTTC	4 cut(s)	87, 218, 236, 905
HpyCH4III	ACNGT	7 cut(s)	36, 323, 447, 902, 931, 966, 1001
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	5 cut(s)	67, 281, 529, 596, 632
HpyF10VI	GCNNNNNNNGC	5 cut(s)	602, 638, 932, 968, 1037
HpyF3I	CTNAG	6 cut(s)	422, 435, 450, 801, 854, 867
HpySE526I	ACGT	1 cut(s)	592
Hsp92II	CATG	4 cut(s)	182, 563, 626, 998
Kpn2I	TCCGGA	1 cut(s)	367
Kzo9I	GATC	4 cut(s)	364, 694, 937, 954
LmnI	GCTCC	2 cut(s)	467, 558
Lsp1109I	GCAGC	4 cut(s)	51, 562, 608, 644
LweI	GCATC	2 cut(s)	787, 1019
MaeI	CTAG	2 cut(s)	606, 642
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	4 cut(s)	366, 696, 939, 956
MbiI	CCGCTC	1 cut(s)	489
MboI	GATC	4 cut(s)	364, 694, 937, 954
MflI	RGATCY	1 cut(s)	954
MhlI	GDGCHC	1 cut(s)	774
MluCI	AATT	4 cut(s)	348, 427, 580, 759
MlyI	GAGTC	1 cut(s)	169
MroI	TCCGGA	1 cut(s)	367
MseI	TTAA	3 cut(s)	12, 93, 216
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	2 cut(s)	671, 820
Mva1269I	GAATGC	1 cut(s)	847
MvaI	CCWGG	2 cut(s)	671, 820
MwoI	GCNNNNNNNGC	5 cut(s)	602, 638, 932, 968, 1037
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	4 cut(s)	364, 694, 937, 954
NlaIII	CATG	4 cut(s)	182, 563, 626, 998
NmuCI	GTSAC	1 cut(s)	22
PaeR7I	CTCGAG	1 cut(s)	600
PagI	TCATGA	3 cut(s)	178, 559, 994
PcsI	WCGNNNNNNNCGW	1 cut(s)	598
PctI	GAATGC	1 cut(s)	847
PfeI	GAWTC	7 cut(s)	56, 119, 210, 502, 700, 823, 832
PkrI	GCNGC	4 cut(s)	66, 552, 598, 634
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PsiI	TTATAA	2 cut(s)	381, 764
Psp6I	CCWGG	2 cut(s)	669, 818
PspGI	CCWGG	2 cut(s)	669, 818
PspXI	VCTCGAGB	1 cut(s)	600
PstI	CTGCAG	1 cut(s)	69
PstNI	CAGNNNCTG	1 cut(s)	935
PsuI	RGATCY	1 cut(s)	954
SaqAI	TTAA	3 cut(s)	12, 93, 216
SatI	GCNGC	4 cut(s)	65, 551, 597, 633
Sau3AI	GATC	4 cut(s)	364, 694, 937, 954
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	2 cut(s)	671, 820
SduI	GDGCHC	1 cut(s)	774
SfaNI	GCATC	2 cut(s)	787, 1019
SfcI	CTRYAG	1 cut(s)	65
Sfr274I	CTCGAG	1 cut(s)	600
SlaI	CTCGAG	1 cut(s)	600
SmlI	CTYRAG	2 cut(s)	11, 600
SmoI	CTYRAG	2 cut(s)	11, 600
Sse9I	AATT	4 cut(s)	348, 427, 580, 759
SsiI	CCGC	2 cut(s)	487, 905
SspI	AATATT	1 cut(s)	914
SspMI	CTAG	2 cut(s)	606, 642
StyD4I	CCNGG	2 cut(s)	669, 818
TaaI	ACNGT	7 cut(s)	36, 323, 447, 902, 931, 966, 1001
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	3 cut(s)	86, 115, 601
TasI	AATT	4 cut(s)	348, 427, 580, 759
TfiI	GAWTC	7 cut(s)	56, 119, 210, 502, 700, 823, 832
Tru1I	TTAA	3 cut(s)	12, 93, 216
Tru9I	TTAA	3 cut(s)	12, 93, 216
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	4 cut(s)	64, 550, 596, 632
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	5 cut(s)	202, 411, 740, 768, 980
TspGWI	ACGGA	2 cut(s)	480, 545
TspRI	CASTG	1 cut(s)	27
Vha464I	CTTAAG	1 cut(s)	11
XhoI	CTCGAG	1 cut(s)	600
XspI	CTAG	2 cut(s)	606, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.