Rorug03G0355900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0008761
Physical Location & Seq
Reverse (-)
44112792 .. 44115001
2210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0355900.1

Sequence Viewer

Length: 1476 bp
ATGGCTGGGAACGACGGTGATGTTTGGGTTCCGAGAGTTGAAGACGCTGAGAAAGTGGACATCCTTGAATATAGTTTAGTGTGTCTTGTATTTAAGTGCTTCAAATATCTCGAGTGTTTGTTGAGAAGGCTGGTTATGGCTTTTAATATTGTCCGAGTTGTGGCCCACCCCGATTATTTCACCGTCAAAGTGTACCATGGAGGCTGCTTACAGAGGGAGTCCTATGTTGGAGGGAAAGTTGACTACTATGGTAATGTAGATAAAGATAGGATGTCATTGGTGGAGTGCAATACCTACTTGGAGGCTTATCATATTGTACTTGGACCATGTAGAGAGCTTCATGAAGTGTTTGGGGATTCAGATGATGATATTTTCATGTACGAAGATTTGTTCTTCAGTGAAGGTGGTAAGAGCGGTGTTGTTATAGAAGAGCTTCCTGACTCGCCAAGAAAGAAGCCAAGTGTTGTTATAACAGAGCTACTGGATGAGCCTATAACACAGCCAAGCAAAGGAGTTGTGATTAGAGATATGGAGAACCATGTACCAACTCAAGCAAGCCAAGCTGGAGGTTTGGATCCAAAAGAGAAGGGAAAACAGAAGCTTATAAAGTACCACTCTAGTGGGAAAAAAACTTCAAAAGGTGACCAACAAGCATCAAGTGGTTTGGGGCAGTCAAGTATAGGACAAGGCAGCAGTGATATTGGTTCAACAAGTGGTGTGCAAGGGTCAGGTGTGGTGCGGGGGACAAGTGATGTAGAGTGTAAGGGTTCTGGTCTACATGATATAGATGTGATGGACTATCTTCAGTCCTTTGGTGGTGGTGAGGCTAATGGGGGATTTTGTGAAGGGGGCAGTGAGGAGGCAGGTTCAAGTGAGGAGGATGAGGATTATGATCCTCAATTTGATGATGAGGATTATGACCACTATGGAACTGATGATGATGATTGGCTGGAAGAAGCAGTGATGGAGACAGCTTCAAAAGGCAAAACTGCAAGGGTGGGATCAAAGGGTCAAGAGTCAAATGTAGAGCAGGAAGTGGAGCACTTTTCTGATGATGAGGATATGTTTAAGGAGGATGGTTCAGATGATGAGAGGCTGCAATATGCCAGTAATTCTGATGGAGAATTAGAGGATGTGGGGATTGAATTCAATCCTATTACTGATATGAAAAAACCCAAGTTTTGCTTGGGAATGAAGTTTGCTGATGTGAAGGTATTGAGGGATGCCTTAAGGGAGATGGCAATTCAGGGTGGACGGGAATATGTCTATATCAAGAATGATAAGACAAGGTTAAGGGTGGTGTGCAAGGAGGATAACTGCCCATTTTTTCTGTTTGCCTCCAAGATGAAACATGAAAGCACTATTCAGATGAAGGAGTATGTACCTGAACACAAGTGCACAAGAAAATTTAACAATAGCATGGTAAGGATGAGGTACCTTACAGCAAGGTTCAAGGACCAGATTGCTCTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_8

Protein Analysis

491

Amino Acids

54.91

Weight (kDa)

4.71

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 394 - 456 1.2e-11 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 470, 605
Acc36I ACCTGC 1 cut(s) 854
Acc65I GGTACC 1 cut(s) 1434
AccB1I GGYRCC 1 cut(s) 1434
AccBSI CCGCTC 1 cut(s) 414
AccI GTMKAC 1 cut(s) 775
AciI CCGC 2 cut(s) 414, 739
AclWI GGATC 4 cut(s) 569, 582, 887, 1009
AcsI RAATTY 2 cut(s) 1145, 1406
AcuI CTGAAG 2 cut(s) 379, 788
AfaI GTAC 7 cut(s) 194, 318, 380, 543, 611, 1383, 1436
AfiI CCNNNNNNNGG 2 cut(s) 160, 509
AflII CTTAAG 1 cut(s) 1228
AleI CACNNNNGTG 1 cut(s) 618
AluBI AGCT 6 cut(s) 337, 433, 478, 563, 601, 974
AluI AGCT 6 cut(s) 337, 433, 478, 563, 601, 974
Alw21I GWGCWC 2 cut(s) 1044, 1400
Alw26I GTCTC 1 cut(s) 962
Alw44I GTGCAC 1 cut(s) 1396
AlwI GGATC 4 cut(s) 569, 582, 887, 1009
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 1 cut(s) 162
ApaLI GTGCAC 1 cut(s) 1396
ApeKI GCWGC 3 cut(s) 204, 690, 1096
ApoI RAATTY 2 cut(s) 1145, 1406
Asp700I GAANNNNTTC 1 cut(s) 432
Asp718I GGTACC 1 cut(s) 1434
AspS9I GGNCC 3 cut(s) 163, 323, 1456
AsuHPI GGTGA 4 cut(s) 29, 172, 653, 833
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 2 cut(s) 323, 1456
BaeGI GKGCMC 1 cut(s) 1400
BamHI GGATCC 1 cut(s) 574
BanI GGYRCC 1 cut(s) 1434
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 2 cut(s) 1044, 1400
BbvI GCAGC 3 cut(s) 191, 702, 1083
BccI CCATC 5 cut(s) 787, 958, 1070, 1112, 1231
BcoDI GTCTC 1 cut(s) 962
BfaI CTAG 1 cut(s) 618
BfrI CTTAAG 1 cut(s) 1228
BfuAI ACCTGC 1 cut(s) 854
BisI GCNGC 3 cut(s) 205, 691, 1097
BlsI GCNGC 3 cut(s) 206, 692, 1098
Bme18I GGWCC 2 cut(s) 323, 1456
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 3 cut(s) 163, 323, 1456
BmiI GGNNCC 3 cut(s) 30, 576, 1436
BmsI GCATC 2 cut(s) 662, 1213
BpiI GAAGAC 1 cut(s) 48
BpmI CTGGAG 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 534
BsaBI GATNNNNATC 1 cut(s) 891
BsaJI CCNNGG 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 509
Bse1I ACTGG 2 cut(s) 486, 1107
Bse8I GATNNNNATC 1 cut(s) 891
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 8 cut(s) 60, 276, 490, 886, 1081, 1138, 1228, 1434
BseJI GATNNNNATC 1 cut(s) 891
BseLI CCNNNNNNNGG 2 cut(s) 160, 509
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 486, 1107
BseRI GAGGAG 2 cut(s) 872, 890
BseSI GKGCMC 1 cut(s) 1400
BseXI GCAGC 3 cut(s) 191, 702, 1083
BseYI CCCAGC 1 cut(s) 5
BshFI GGCC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 1434
BsiHKAI GWGCWC 2 cut(s) 1044, 1400
BsiHKCI CYCGRG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 757
BslI CCNNNNNNNGG 2 cut(s) 160, 509
BsmAI GTCTC 1 cut(s) 962
BsmFI GGGAC 1 cut(s) 757
BsnI GGCC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 1044, 1400
Bsp143I GATC 3 cut(s) 574, 892, 1001
Bsp19I CCATGG 1 cut(s) 196
BspACI CCGC 2 cut(s) 414, 739
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 40
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 3 cut(s) 30, 576, 1436
BspMI ACCTGC 1 cut(s) 854
BspPI GGATC 4 cut(s) 569, 582, 887, 1009
BspQI GCTCTTC 1 cut(s) 423
BspT107I GGYRCC 1 cut(s) 1434
BspTI CTTAAG 1 cut(s) 1228
BsrBI CCGCTC 1 cut(s) 414
BsrI ACTGG 2 cut(s) 486, 1107
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 3 cut(s) 574, 892, 1001
BssT1I CCWWGG 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 17, 184
Bst6I CTCTTC 1 cut(s) 423
BstAFI CTTAAG 1 cut(s) 1228
BstC8I GCNNGC 1 cut(s) 556
BstDEI CTNAG 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 196
BstEII GGTNACC 1 cut(s) 641
BstF5I GGATG 8 cut(s) 60, 276, 490, 886, 1081, 1138, 1228, 1434
BstKTI GATC 3 cut(s) 577, 895, 1004
BstMAI GTCTC 1 cut(s) 962
BstMBI GATC 3 cut(s) 574, 892, 1001
BstMWI GCNNNNNNNGC 1 cut(s) 560
BstPI GGTNACC 1 cut(s) 641
BstSLI GKGCMC 1 cut(s) 1400
BstV1I GCAGC 3 cut(s) 191, 702, 1083
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 574
BstXI CCANNNNNNTGG 1 cut(s) 620
BstYI RGATCY 1 cut(s) 574
BsuRI GGCC 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 196
BtsCI GGATG 8 cut(s) 60, 276, 490, 886, 1081, 1138, 1228, 1434
BtsI GCAGTG 3 cut(s) 700, 859, 966
BtsIMutI CAGTG 4 cut(s) 403, 700, 859, 966
BveI ACCTGC 1 cut(s) 854
Cac8I GCNNGC 1 cut(s) 556
CciI TCATGA 1 cut(s) 340
Cfr13I GGNCC 3 cut(s) 163, 323, 1456
CseI GACGC 1 cut(s) 53
Csp6I GTAC 7 cut(s) 193, 317, 379, 542, 610, 1382, 1435
CviAII CATG 8 cut(s) 197, 327, 341, 376, 539, 779, 1352, 1420
CviQI GTAC 7 cut(s) 193, 317, 379, 542, 610, 1382, 1435
DdeI CTNAG 1 cut(s) 48
DpnI GATC 3 cut(s) 576, 894, 1003
DpnII GATC 3 cut(s) 574, 892, 1001
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 196
Eco47I GGWCC 2 cut(s) 323, 1456
Eco57I CTGAAG 2 cut(s) 379, 788
Eco88I CYCGRG 1 cut(s) 110
Eco91I GGTNACC 1 cut(s) 641
EcoO65I GGTNACC 1 cut(s) 641
EcoRI GAATTC 1 cut(s) 1145
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 8 cut(s) 200, 330, 344, 379, 542, 782, 1355, 1423
FalI AAGNNNNNCTT 2 cut(s) 1169, 1201
FaqI GGGAC 1 cut(s) 757
FatI CATG 8 cut(s) 196, 326, 340, 375, 538, 778, 1351, 1419
FauI CCCGC 1 cut(s) 732
FblI GTMKAC 1 cut(s) 775
Fnu4HI GCNGC 3 cut(s) 205, 691, 1097
FokI GGATG 8 cut(s) 47, 283, 497, 893, 1088, 1145, 1235, 1441
Fsp4HI GCNGC 3 cut(s) 205, 691, 1097
FspBI CTAG 1 cut(s) 618
GluI GCNGC 3 cut(s) 205, 691, 1097
GsaI CCCAGC 1 cut(s) 9
GsuI CTGGAG 1 cut(s) 585
HaeIII GGCC 1 cut(s) 164
HgaI GACGC 1 cut(s) 53
Hin1II CATG 8 cut(s) 200, 330, 344, 379, 542, 782, 1355, 1423
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 4 cut(s) 218, 356, 440, 1016
HphI GGTGA 4 cut(s) 29, 172, 653, 833
Hpy166II GTNNAC 6 cut(s) 58, 193, 241, 776, 1253, 1398
Hpy188I TCNGA 7 cut(s) 33, 155, 361, 1051, 1084, 1117, 1368
Hpy188III TCNNGA 5 cut(s) 110, 341, 437, 1013, 1273
Hpy8I GTNNAC 6 cut(s) 58, 193, 241, 776, 1253, 1398
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 6 cut(s) 120, 395, 580, 839, 1204, 1366
HpyCH4III ACNGT 2 cut(s) 17, 184
HpyCH4V TGCA 6 cut(s) 288, 721, 992, 1099, 1305, 1398
HpyF10VI GCNNNNNNNGC 1 cut(s) 560
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 8 cut(s) 200, 330, 344, 379, 542, 782, 1355, 1423
KpnI GGTACC 1 cut(s) 1438
Kzo9I GATC 3 cut(s) 574, 892, 1001
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 1 cut(s) 1039
Lsp1109I GCAGC 3 cut(s) 191, 702, 1083
LweI GCATC 2 cut(s) 662, 1213
MaeI CTAG 1 cut(s) 618
MaeIII GTNAC 1 cut(s) 641
MalI GATC 3 cut(s) 576, 894, 1003
MbiI CCGCTC 1 cut(s) 414
MboI GATC 3 cut(s) 574, 892, 1001
MboII GAAGA 6 cut(s) 53, 385, 395, 440, 794, 965
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 2 cut(s) 1044, 1400
MluCI AATT 6 cut(s) 899, 1111, 1124, 1145, 1242, 1406
MlyI GAGTC 3 cut(s) 227, 434, 1025
MmeI TCCRAC 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 432
MseI TTAA 7 cut(s) 93, 144, 1068, 1229, 1292, 1410, 1470
MslI CAYNNNNRTG 1 cut(s) 618
MspCI CTTAAG 1 cut(s) 1228
MwoI GCNNNNNNNGC 1 cut(s) 560
NcoI CCATGG 1 cut(s) 196
NdeII GATC 3 cut(s) 574, 892, 1001
NlaIII CATG 8 cut(s) 200, 330, 344, 379, 542, 782, 1355, 1423
NlaIV GGNNCC 3 cut(s) 30, 576, 1436
NmuCI GTSAC 1 cut(s) 641
OliI CACNNNNGTG 1 cut(s) 618
PaeR7I CTCGAG 1 cut(s) 110
PagI TCATGA 1 cut(s) 340
PciSI GCTCTTC 1 cut(s) 423
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 3 cut(s) 206, 692, 1098
PleI GAGTC 3 cut(s) 226, 434, 1024
PpsI GAGTC 3 cut(s) 226, 434, 1024
PsiI TTATAA 2 cut(s) 470, 605
PspEI GGTNACC 1 cut(s) 641
PspFI CCCAGC 1 cut(s) 5
PspN4I GGNNCC 3 cut(s) 30, 576, 1436
PspPI GGNCC 3 cut(s) 163, 323, 1456
PsuI RGATCY 1 cut(s) 574
RsaI GTAC 7 cut(s) 194, 318, 380, 543, 611, 1383, 1436
RsaNI GTAC 7 cut(s) 193, 317, 379, 542, 610, 1382, 1435
RseI CAYNNNNRTG 1 cut(s) 618
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 7 cut(s) 93, 144, 1068, 1229, 1292, 1410, 1470
SatI GCNGC 3 cut(s) 205, 691, 1097
Sau3AI GATC 3 cut(s) 574, 892, 1001
Sau96I GGNCC 3 cut(s) 163, 323, 1456
SchI GAGTC 3 cut(s) 227, 434, 1025
SduI GDGCHC 2 cut(s) 1044, 1400
SfaNI GCATC 2 cut(s) 662, 1213
Sfr274I CTCGAG 1 cut(s) 110
SinI GGWCC 2 cut(s) 323, 1456
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 618
SmlI CTYRAG 3 cut(s) 110, 549, 1228
SmoI CTYRAG 3 cut(s) 110, 549, 1228
Sse9I AATT 6 cut(s) 899, 1111, 1124, 1145, 1242, 1406
SsiI CCGC 2 cut(s) 414, 739
SspI AATATT 1 cut(s) 148
SspMI CTAG 1 cut(s) 618
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 2 cut(s) 17, 184
TaqI TCGA 1 cut(s) 111
TasI AATT 6 cut(s) 899, 1111, 1124, 1145, 1242, 1406
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 7 cut(s) 93, 144, 1068, 1229, 1292, 1410, 1470
Tru9I TTAA 7 cut(s) 93, 144, 1068, 1229, 1292, 1410, 1470
TscAI CASTG 4 cut(s) 403, 700, 859, 966
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 3 cut(s) 204, 690, 1096
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 8 cut(s) 329, 357, 364, 1181, 1208, 1361, 1368, 1385
TspRI CASTG 4 cut(s) 403, 700, 859, 966
Vha464I CTTAAG 1 cut(s) 1228
VneI GTGCAC 1 cut(s) 1396
VpaK11BI GGWCC 2 cut(s) 323, 1456
XapI RAATTY 2 cut(s) 1145, 1406
XcmI CCANNNNNNNNNTGG 1 cut(s) 1183
XhoI CTCGAG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 775
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.