Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011792

Physical Location & Seq

Genomic Coordinates Reverse (-)

1336274 .. 1337849

Gene Structure 1576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGATGATGATGATTCAGAGAAGAGGAGGTGAGAGACAAGACTCGTCGGCGGCGGCGTACAACGTTGTCCATAAGTTGCCTCACGGAGACAGTCCTTATGTCCGAGCGAAGCATGTTCAGTTGGTGGAGAAAGATGCAGAAGCAGCGATAGAGTTGTTTTGGATAGCGATTAAAGCGAGAGATAGAGTTGATAGTGCTCTTAAAGACATGGCCTTGTTAATGAAACAACAGAACAGAGCTGAAGAAGCCATTGACGCTATTCAATCCTTTAGAGATCTTTGTTCAAGACAAGCTCAAGAGTCATTAGACAATGTCCTCATCGATCTATATAAGAAATGTGGGAGAATAGAAGAGCAAGTTGAGTTATTGAAGCAAAAGCTTTGGATGATATATCAAGGAGAAGCATTCAATGGCAAACCAACAAAGACTGCGAGATCTCATGGCAAGAAGTTTCAGGTCACCGTCGAGAAGGAAACCTCTAGGATCTTGGGGAACTTGGGATGGGCTTATATGCAACTAATGGACTATACAGCAGCTGAAGCTGTGTATCGGAAAGCTCAATTGATAGAGCCAGATGCAAACAAGGCTTGCAATTTATGCACATGTCTCATCAAGCAAGGGAAGCACGATGAGGCGAGGTCGATTCTCTTTCGTGATGTACTAATGGAGAACAAAGAAGGGTCTGGTGATCCGAGGTTGATGGCTCGGGTTCAAGAGCTATTGAGTGAGCTAAAGCCACAGGAAGAAGAAGCAGCGGCTTCTGTGTCTGTGGAATGTGAAGTTGGTATAGATGAGATAGCGGTTGTCGAAGGACTTGATGAGTTTGTGAAGGAATGGAGGAGGCCTTATAGGACAAGAAGACTTCCGATTTTCGAAGAGATCTTACCACTGAGAGATCAATTGGCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006109 GO:0006792 GO:0006950 GO:0006996 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0009991 GO:0010438 GO:0010439 GO:0010675 GO:0016043 GO:0017053 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0042594 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043455 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051716 GO:0062012 GO:0065007 GO:0070013 GO:0071496 GO:0071840 GO:0080090 GO:0090568 GO:1900376

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

303

Amino Acids

34.66

Weight (kDa)

5.89

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04770
fragaria_vesca	FvH4_4g05910 FvH4_4g05910
malus_domestica	MD13G1231400.v1.1
prunus_persica	Prupe.1G061500_v2.0.a1
pyrus_communis	pycom13g20430
rosa_chinensis	RchiOBHm_Chr4g0397051
rosa_laevigata	RLG00000009453
rosa_multiflora	Rmu_sc0007785.1_g000009
rosa_roxburghii	Rroxscaffold_5G00342050
rosa_rugosa	Rorug03G0345200 Rorug03G0345300 Rorug03G0345400
rosa_samantha	Rh4AG076800 Rh4BG072700 Rh4CG081700 Rh4DG070200
rosa_wichuraiana	Rw0G020190 Rw4G006180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	50, 53, 755, 800
AclI	AACGTT	1 cut(s)	63
AclWI	GGATC	2 cut(s)	491, 683
AcuI	CTGAAG	2 cut(s)	261, 558
AfaI	GTAC	2 cut(s)	59, 660
AflIII	ACRYGT	1 cut(s)	602
AgsI	TTSAA	5 cut(s)	263, 285, 370, 409, 713
AjuI	GAANNNNNNNTTGG	2 cut(s)	765, 797
AluBI	AGCT	8 cut(s)	239, 293, 379, 536, 542, 557, 718, 730
AluI	AGCT	8 cut(s)	239, 293, 379, 536, 542, 557, 718, 730
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	3 cut(s)	28, 81, 611
AlwI	GGATC	2 cut(s)	491, 683
AlwNI	CAGNNNCTG	1 cut(s)	536
Ama87I	CYCGRG	1 cut(s)	705
AoxI	GGCC	2 cut(s)	210, 842
ApeKI	GCWGC	3 cut(s)	143, 533, 752
AsuHPI	GGTGA	3 cut(s)	41, 451, 698
AsuII	TTCGAA	1 cut(s)	873
AvaI	CYCGRG	1 cut(s)	705
BarI	GAAGNNNNNNTAC	2 cut(s)	867, 899
BbsI	GAAGAC	1 cut(s)	865
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	3 cut(s)	155, 545, 764
BccI	CCATC	2 cut(s)	495, 694
BcoDI	GTCTC	3 cut(s)	28, 81, 611
BfaI	CTAG	1 cut(s)	480
BglII	AGATCT	3 cut(s)	274, 434, 879
BisI	GCNGC	6 cut(s)	51, 54, 144, 534, 753, 756
BlsI	GCNGC	6 cut(s)	52, 55, 145, 535, 754, 757
BmeT110I	CYCGRG	1 cut(s)	705
BmsI	GCATC	2 cut(s)	124, 565
BpiI	GAAGAC	1 cut(s)	865
Bpu14I	TTCGAA	1 cut(s)	873
BpuEI	CTTGAG	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	692
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	692
BseGI	GGATG	2 cut(s)	390, 506
BseMII	CTCAG	1 cut(s)	881
BseRI	GAGGAG	2 cut(s)	39, 853
BseXI	GCAGC	3 cut(s)	155, 545, 764
BshFI	GGCC	2 cut(s)	212, 844
BshVI	ATCGAT	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	705
BsmAI	GTCTC	3 cut(s)	28, 81, 611
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	212, 844
BsoBI	CYCGRG	1 cut(s)	705
Bsp119I	TTCGAA	1 cut(s)	873
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	7 cut(s)	274, 322, 434, 483, 688, 879, 895
BspACI	CCGC	4 cut(s)	50, 53, 755, 800
BspANI	GGCC	2 cut(s)	212, 844
BspCNI	CTCAG	1 cut(s)	882
BspDI	ATCGAT	1 cut(s)	321
BspPI	GGATC	2 cut(s)	491, 683
BspQI	GCTCTTC	1 cut(s)	345
BspT104I	TTCGAA	1 cut(s)	873
BssECI	CCNNGG	1 cut(s)	692
BssMI	GATC	7 cut(s)	274, 322, 434, 483, 688, 879, 895
Bst4CI	ACNGT	2 cut(s)	92, 463
Bst6I	CTCTTC	3 cut(s)	16, 345, 870
BstAPI	GCANNNNNTGC	1 cut(s)	597
BstBI	TTCGAA	1 cut(s)	873
BstC8I	GCNNGC	1 cut(s)	589
BstDEI	CTNAG	1 cut(s)	890
BstEII	GGTNACC	1 cut(s)	457
BstF5I	GGATG	2 cut(s)	390, 506
BstKTI	GATC	7 cut(s)	277, 325, 437, 486, 691, 882, 898
BstMAI	GTCTC	3 cut(s)	28, 81, 611
BstMBI	GATC	7 cut(s)	274, 322, 434, 483, 688, 879, 895
BstMWI	GCNNNNNNNGC	8 cut(s)	143, 173, 245, 254, 539, 584, 597, 622
BstNSI	RCATGY	2 cut(s)	116, 606
BstPI	GGTNACC	1 cut(s)	457
BstV1I	GCAGC	3 cut(s)	155, 545, 764
BstV2I	GAAGAC	1 cut(s)	865
BstX2I	RGATCY	4 cut(s)	274, 434, 483, 879
BstYI	RGATCY	4 cut(s)	274, 434, 483, 879
Bsu15I	ATCGAT	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	212, 844
BsuTUI	ATCGAT	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	390, 506
BtsIMutI	CAGTG	1 cut(s)	887
Cac8I	GCNNGC	1 cut(s)	589
CaiI	CAGNNNCTG	1 cut(s)	536
ClaI	ATCGAT	1 cut(s)	321
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	58, 659
CviAII	CATG	4 cut(s)	113, 208, 440, 603
CviQI	GTAC	2 cut(s)	58, 659
DdeI	CTNAG	1 cut(s)	890
DpnI	GATC	7 cut(s)	276, 324, 436, 485, 690, 881, 897
DpnII	GATC	7 cut(s)	274, 322, 434, 483, 688, 879, 895
Eam1104I	CTCTTC	3 cut(s)	16, 345, 870
EarI	CTCTTC	3 cut(s)	16, 345, 870
Eco147I	AGGCCT	1 cut(s)	844
Eco57I	CTGAAG	2 cut(s)	261, 558
Eco88I	CYCGRG	1 cut(s)	705
Eco91I	GGTNACC	1 cut(s)	457
EcoO65I	GGTNACC	1 cut(s)	457
FaeI	CATG	4 cut(s)	116, 211, 443, 606
FatI	CATG	4 cut(s)	112, 207, 439, 602
Fnu4HI	GCNGC	6 cut(s)	51, 54, 144, 534, 753, 756
FokI	GGATG	2 cut(s)	397, 513
Fsp4HI	GCNGC	6 cut(s)	51, 54, 144, 534, 753, 756
FspBI	CTAG	1 cut(s)	480
GluI	GCNGC	6 cut(s)	51, 54, 144, 534, 753, 756
HaeIII	GGCC	2 cut(s)	212, 844
HgaI	GACGC	1 cut(s)	263
Hin1II	CATG	4 cut(s)	116, 211, 443, 606
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	4 cut(s)	13, 41, 299, 643
HphI	GGTGA	3 cut(s)	41, 451, 698
Hpy188I	TCNGA	5 cut(s)	18, 104, 552, 693, 867
Hpy188III	TCNNGA	5 cut(s)	285, 296, 466, 653, 713
Hpy99I	CGWCG	2 cut(s)	49, 467
HpyAV	CCTTC	4 cut(s)	463, 671, 803, 823
HpyCH4III	ACNGT	2 cut(s)	92, 463
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	5 cut(s)	137, 514, 578, 591, 600
HpyF10VI	GCNNNNNNNGC	8 cut(s)	143, 173, 245, 254, 539, 584, 597, 622
HpyF3I	CTNAG	1 cut(s)	890
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	4 cut(s)	116, 211, 443, 606
Kzo9I	GATC	7 cut(s)	274, 322, 434, 483, 688, 879, 895
LguI	GCTCTTC	1 cut(s)	345
LpnPI	CCDG	4 cut(s)	440, 585, 669, 725
Lsp1109I	GCAGC	3 cut(s)	155, 545, 764
LweI	GCATC	2 cut(s)	124, 565
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	7 cut(s)	276, 324, 436, 485, 690, 881, 897
MboI	GATC	7 cut(s)	274, 322, 434, 483, 688, 879, 895
MboII	GAAGA	7 cut(s)	33, 254, 362, 755, 758, 870, 887
MfeI	CAATTG	2 cut(s)	560, 899
MflI	RGATCY	4 cut(s)	274, 434, 483, 879
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	3 cut(s)	560, 592, 899
MlyI	GAGTC	2 cut(s)	35, 308
MseI	TTAA	3 cut(s)	171, 201, 218
MspA1I	CMGCKG	2 cut(s)	536, 755
MunI	CAATTG	2 cut(s)	560, 899
Mva1269I	GAATGC	1 cut(s)	404
MwoI	GCNNNNNNNGC	8 cut(s)	143, 173, 245, 254, 539, 584, 597, 622
NdeII	GATC	7 cut(s)	274, 322, 434, 483, 688, 879, 895
NlaIII	CATG	4 cut(s)	116, 211, 443, 606
NmuCI	GTSAC	1 cut(s)	457
NspI	RCATGY	2 cut(s)	116, 606
NspV	TTCGAA	1 cut(s)	873
PceI	AGGCCT	1 cut(s)	844
PciI	ACATGT	1 cut(s)	602
PciSI	GCTCTTC	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PctI	GAATGC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	13, 643
PflFI	GACNNNGTC	1 cut(s)	311
PkrI	GCNGC	6 cut(s)	52, 55, 145, 535, 754, 757
PleI	GAGTC	2 cut(s)	35, 307
PpsI	GAGTC	2 cut(s)	35, 307
PscI	ACATGT	1 cut(s)	602
Psp1406I	AACGTT	1 cut(s)	63
PspEI	GGTNACC	1 cut(s)	457
PstNI	CAGNNNCTG	1 cut(s)	536
PsuI	RGATCY	4 cut(s)	274, 434, 483, 879
PsyI	GACNNNGTC	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	2 cut(s)	59, 660
RsaNI	GTAC	2 cut(s)	58, 659
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	3 cut(s)	171, 201, 218
SatI	GCNGC	6 cut(s)	51, 54, 144, 534, 753, 756
Sau3AI	GATC	7 cut(s)	274, 322, 434, 483, 688, 879, 895
SchI	GAGTC	2 cut(s)	35, 308
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	2 cut(s)	124, 565
SfuI	TTCGAA	1 cut(s)	873
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	3 cut(s)	560, 592, 899
SseBI	AGGCCT	1 cut(s)	844
SsiI	CCGC	4 cut(s)	50, 53, 755, 800
SspMI	CTAG	1 cut(s)	480
StuI	AGGCCT	1 cut(s)	844
TaaI	ACNGT	2 cut(s)	92, 463
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	5 cut(s)	321, 465, 641, 807, 873
TasI	AATT	3 cut(s)	560, 592, 899
TatI	WGTACW	1 cut(s)	658
TauI	GCSGC	3 cut(s)	53, 56, 758
TfiI	GAWTC	2 cut(s)	13, 643
Tru1I	TTAA	3 cut(s)	171, 201, 218
Tru9I	TTAA	3 cut(s)	171, 201, 218
TscAI	CASTG	1 cut(s)	894
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	3 cut(s)	143, 533, 752
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	1 cut(s)	236
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	1 cut(s)	894
Tth111I	GACNNNGTC	1 cut(s)	311
XceI	RCATGY	2 cut(s)	116, 606
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.