Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011792

Physical Location & Seq

Genomic Coordinates Reverse (-)

5333164 .. 5336570

Gene Structure 3407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05910.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAAGAGCCTGAGAAAAGGTGGAGAGGTTTCTCAAGACCCTCCTCCTTACCATGTTCTTCACAAATTGCCTCCTGGTGATAGCCCTTATGTTCGAGCCAAACATGTCCAGTTAGTTGAGAAGGATCCAGAAGCTGCTATAGTATTGTTCTGGAAGGCCATCAATGCCGGAGACAGGGTGGATAGTGCCCTAAAGGACATGGCAATAGTCATGAAGCAGCAAGACAGAGCAGAAGAAGCAATTGAAGCAATAATGTCTTTCAGGGACCGCTGCTCCAAGCAGGCACAGGAATCCCTAGATAACGTACTAATTGACTTATACAAGAAATGTGGGAGAATGGAGGAGCAAATAGAGCTATTGAAGCGGAAGCTACGGATGATTTACCAAGGAGAGGCCTTCAATGGCAAGCTTACCAAGACGGCACGCTCTCATGGAAGGAAGTTCCAAGTCACCATCAAGAAAGAGACCTCCAGGATACTGGGGAACTTAGGTTGGGCCTACATGCAACAAGGGAACAATGTAGCAGCAGAAGTGGTATATCGCAAAGCTCAAATCATTGACCCAGATGCCAACAAGGCCTGTAACTTATGCCTCTGCCTGATCAGACAAGCCCGATATGCAGAGGCACAATCGGTTCTTGATGAAGTATTACAGGGTAAACTTTCAGGATCGGATGATGGCAAGTCGAAAACACGCGCTGGGGAACTGTTGCAGGAGCTAAAGACATGCCAGCCTATAGACTTGTCATCCAATCATTCGTTAGGTTTAAACATAGAAGATGCTTTTCTCGAGGGGCTTGACCAGTTGGTGAAGCACTGGACCCCTTTAAGATCAAGAAGACTTCCCATCTTTGAAGAGATTTCTCCATATAGAGATCAGTTAGCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0006950 GO:0006996 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0009991 GO:0010438 GO:0010439 GO:0010675 GO:0016043 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0042762 GO:0043255 GO:0043455 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051716 GO:0062012 GO:0065007 GO:0071496 GO:0071840 GO:0080090 GO:1900376

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

297

Amino Acids

33.46

Weight (kDa)

8.72

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04770
fragaria_vesca	FvH4_4g05910 FvH4_4g05910
malus_domestica	MD13G1231400.v1.1
prunus_persica	Prupe.1G061500_v2.0.a1
pyrus_communis	pycom13g20430
rosa_chinensis	RchiOBHm_Chr4g0397051
rosa_laevigata	RLG00000009453
rosa_multiflora	Rmu_sc0007785.1_g000009
rosa_roxburghii	Rroxscaffold_5G00342050
rosa_rugosa	Rorug03G0345200 Rorug03G0345300 Rorug03G0345400
rosa_samantha	Rh4AG076800 Rh4BG072700 Rh4CG081700 Rh4DG070200
rosa_wichuraiana	Rw0G020190 Rw4G006180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	696
AciI	CCGC	2 cut(s)	268, 364
AclWI	GGATC	3 cut(s)	119, 132, 676
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	2 cut(s)	174, 391
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	4 cut(s)	245, 361, 400, 854
AjnI	CCWGG	2 cut(s)	73, 470
AluBI	AGCT	7 cut(s)	134, 355, 370, 409, 548, 718, 884
AluI	AGCT	7 cut(s)	134, 355, 370, 409, 548, 718, 884
Alw26I	GTCTC	2 cut(s)	165, 458
AlwI	GGATC	3 cut(s)	119, 132, 676
AlwNI	CAGNNNCTG	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	788
AoxI	GGCC	4 cut(s)	156, 393, 495, 576
ApeKI	GCWGC	4 cut(s)	134, 217, 270, 524
AspLEI	GCGC	1 cut(s)	698
AspS9I	GGNCC	3 cut(s)	265, 495, 819
AsuHPI	GGTGA	3 cut(s)	89, 442, 820
AvaI	CYCGRG	1 cut(s)	788
AvaII	GGWCC	2 cut(s)	265, 819
BaeGI	GKGCMC	1 cut(s)	190
BamHI	GGATCC	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	844
BbvI	GCAGC	4 cut(s)	121, 229, 257, 536
BccI	CCATC	4 cut(s)	167, 461, 671, 854
BceAI	ACGGC	1 cut(s)	435
BciT130I	CCWGG	2 cut(s)	75, 472
BciVI	GTATCC	1 cut(s)	468
BclI	TGATCA	1 cut(s)	600
BcoDI	GTCTC	2 cut(s)	165, 458
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	2 cut(s)	138, 735
BfuI	GTATCC	1 cut(s)	468
BglI	GCCNNNNNGGC	1 cut(s)	575
BisI	GCNGC	4 cut(s)	135, 218, 271, 525
BlsI	GCNGC	4 cut(s)	136, 219, 272, 526
Bme1390I	CCNGG	2 cut(s)	75, 472
Bme18I	GGWCC	2 cut(s)	265, 819
BmeT110I	CYCGRG	1 cut(s)	788
BmgT120I	GGNCC	3 cut(s)	265, 495, 819
BmiI	GGNNCC	3 cut(s)	126, 266, 821
BmrFI	CCNGG	2 cut(s)	75, 472
BmrI	ACTGGG	1 cut(s)	488
BmsI	GCATC	2 cut(s)	556, 769
BmuI	ACTGGG	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	844
BpmI	CTGGAG	1 cut(s)	454
BpuEI	CTTGAG	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	385
BsaXI	ACNNNNNCTCC	4 cut(s)	162, 192, 257, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 391
Bse1I	ACTGG	4 cut(s)	109, 483, 802, 821
BseBI	CCWGG	2 cut(s)	75, 472
BseDI	CCNNGG	1 cut(s)	385
BseGI	GGATG	3 cut(s)	381, 679, 746
BseLI	CCNNNNNNNGG	2 cut(s)	174, 391
BseNI	ACTGG	4 cut(s)	109, 483, 802, 821
BseRI	GAGGAG	2 cut(s)	33, 356
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	4 cut(s)	121, 229, 257, 536
BseYI	CCCAGC	1 cut(s)	698
Bsh1236I	CGCG	1 cut(s)	696
BshFI	GGCC	4 cut(s)	158, 395, 497, 578
BsiHKCI	CYCGRG	1 cut(s)	788
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	174, 391
BsmAI	GTCTC	2 cut(s)	165, 458
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	4 cut(s)	158, 395, 497, 578
Bso31I	GGTCTC	1 cut(s)	458
BsoBI	CYCGRG	1 cut(s)	788
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	5 cut(s)	124, 600, 668, 830, 874
BspACI	CCGC	2 cut(s)	268, 364
BspANI	GGCC	4 cut(s)	158, 395, 497, 578
BspFNI	CGCG	1 cut(s)	696
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	3 cut(s)	126, 266, 821
BspPI	GGATC	3 cut(s)	119, 132, 676
BspTNI	GGTCTC	1 cut(s)	458
BsrI	ACTGG	4 cut(s)	109, 483, 802, 821
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	5 cut(s)	124, 600, 668, 830, 874
BssT1I	CCWWGG	1 cut(s)	385
Bst2UI	CCWGG	2 cut(s)	75, 472
Bst4CI	ACNGT	1 cut(s)	708
Bst6I	CTCTTC	1 cut(s)	849
BstC8I	GCNNGC	5 cut(s)	282, 407, 424, 731, 886
BstDEI	CTNAG	2 cut(s)	11, 487
BstF5I	GGATG	3 cut(s)	381, 679, 746
BstFNI	CGCG	1 cut(s)	696
BstHHI	GCGC	1 cut(s)	698
BstKTI	GATC	5 cut(s)	127, 603, 671, 833, 877
BstMAI	GTCTC	2 cut(s)	165, 458
BstMBI	GATC	5 cut(s)	124, 600, 668, 830, 874
BstMWI	GCNNNNNNNGC	7 cut(s)	164, 236, 245, 352, 361, 575, 617
BstNI	CCWGG	2 cut(s)	75, 472
BstNSI	RCATGY	3 cut(s)	107, 505, 729
BstSCI	CCNGG	2 cut(s)	73, 470
BstSFI	CTRYAG	2 cut(s)	138, 735
BstSLI	GKGCMC	1 cut(s)	190
BstUI	CGCG	1 cut(s)	696
BstV1I	GCAGC	4 cut(s)	121, 229, 257, 536
BstV2I	GAAGAC	1 cut(s)	844
BstX2I	RGATCY	1 cut(s)	124
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	124
BsuI	GTATCC	1 cut(s)	468
BsuRI	GGCC	4 cut(s)	158, 395, 497, 578
BtsCI	GGATG	3 cut(s)	381, 679, 746
BtsIMutI	CAGTG	1 cut(s)	814
Cac8I	GCNNGC	5 cut(s)	282, 407, 424, 731, 886
CaiI	CAGNNNCTG	1 cut(s)	134
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	1 cut(s)	698
Cfr13I	GGNCC	3 cut(s)	265, 495, 819
Csp6I	GTAC	1 cut(s)	305
CspCI	CAANNNNNGTGG	2 cut(s)	310, 345
CviAII	CATG	7 cut(s)	53, 104, 199, 211, 431, 502, 726
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	2 cut(s)	11, 487
DpnI	GATC	5 cut(s)	126, 602, 670, 832, 876
DpnII	GATC	5 cut(s)	124, 600, 668, 830, 874
DraI	TTTAAA	1 cut(s)	768
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Eco130I	CCWWGG	1 cut(s)	385
Eco147I	AGGCCT	2 cut(s)	395, 578
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	2 cut(s)	265, 819
Eco88I	CYCGRG	1 cut(s)	788
EcoRII	CCWGG	2 cut(s)	73, 470
EcoT14I	CCWWGG	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	7 cut(s)	56, 107, 202, 214, 434, 505, 729
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	7 cut(s)	52, 103, 198, 210, 430, 501, 725
FbaI	TGATCA	1 cut(s)	600
Fnu4HI	GCNGC	4 cut(s)	135, 218, 271, 525
FokI	GGATG	3 cut(s)	388, 686, 733
Fsp4HI	GCNGC	4 cut(s)	135, 218, 271, 525
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	1 cut(s)	697
GluI	GCNGC	4 cut(s)	135, 218, 271, 525
GsaI	CCCAGC	1 cut(s)	702
GsuI	CTGGAG	1 cut(s)	454
HaeIII	GGCC	4 cut(s)	158, 395, 497, 578
HapII	CCGG	1 cut(s)	168
HhaI	GCGC	1 cut(s)	698
Hin1II	CATG	7 cut(s)	56, 107, 202, 214, 434, 505, 729
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	3 cut(s)	89, 442, 820
Hpy166II	GTNNAC	1 cut(s)	659
Hpy188I	TCNGA	2 cut(s)	605, 673
Hpy188III	TCNNGA	9 cut(s)	35, 128, 151, 211, 457, 638, 666, 788, 834
Hpy8I	GTNNAC	1 cut(s)	659
HpyAV	CCTTC	4 cut(s)	115, 148, 406, 429
HpyCH4III	ACNGT	1 cut(s)	708
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	3 cut(s)	505, 620, 712
HpyF10VI	GCNNNNNNNGC	7 cut(s)	164, 236, 245, 352, 361, 575, 617
HpyF3I	CTNAG	2 cut(s)	11, 487
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	7 cut(s)	56, 107, 202, 214, 434, 505, 729
HspAI	GCGC	1 cut(s)	696
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	5 cut(s)	124, 600, 668, 830, 874
LmnI	GCTCC	3 cut(s)	278, 343, 715
Lsp1109I	GCAGC	4 cut(s)	121, 229, 257, 536
LweI	GCATC	2 cut(s)	556, 769
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	2 cut(s)	448, 581
MalI	GATC	5 cut(s)	126, 602, 670, 832, 876
MboI	GATC	5 cut(s)	124, 600, 668, 830, 874
MboII	GAAGA	6 cut(s)	16, 50, 245, 788, 849, 866
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	3 cut(s)	65, 240, 309
MseI	TTAA	2 cut(s)	767, 827
MspA1I	CMGCKG	1 cut(s)	270
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	2 cut(s)	75, 472
MssI	GTTTAAAC	1 cut(s)	768
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	2 cut(s)	75, 472
MvnI	CGCG	1 cut(s)	696
MwoI	GCNNNNNNNGC	7 cut(s)	164, 236, 245, 352, 361, 575, 617
NdeII	GATC	5 cut(s)	124, 600, 668, 830, 874
NlaIII	CATG	7 cut(s)	56, 107, 202, 214, 434, 505, 729
NlaIV	GGNNCC	3 cut(s)	126, 266, 821
NmuCI	GTSAC	1 cut(s)	448
NspI	RCATGY	3 cut(s)	107, 505, 729
PaeR7I	CTCGAG	1 cut(s)	788
PagI	TCATGA	1 cut(s)	210
PceI	AGGCCT	2 cut(s)	395, 578
PciI	ACATGT	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	470
PkrI	GCNGC	4 cut(s)	136, 219, 272, 526
PmeI	GTTTAAAC	1 cut(s)	768
PscI	ACATGT	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	73, 470
PspFI	CCCAGC	1 cut(s)	698
PspGI	CCWGG	2 cut(s)	73, 470
PspN4I	GGNNCC	3 cut(s)	126, 266, 821
PspPI	GGNCC	3 cut(s)	265, 495, 819
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	767, 827
SatI	GCNGC	4 cut(s)	135, 218, 271, 525
Sau3AI	GATC	5 cut(s)	124, 600, 668, 830, 874
Sau96I	GGNCC	3 cut(s)	265, 495, 819
ScrFI	CCNGG	2 cut(s)	75, 472
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	2 cut(s)	556, 769
SfcI	CTRYAG	2 cut(s)	138, 735
Sfr274I	CTCGAG	1 cut(s)	788
SinI	GGWCC	2 cut(s)	265, 819
SlaI	CTCGAG	1 cut(s)	788
SmlI	CTYRAG	2 cut(s)	33, 788
SmoI	CTYRAG	2 cut(s)	33, 788
Sse9I	AATT	3 cut(s)	65, 240, 309
SseBI	AGGCCT	2 cut(s)	395, 578
SsiI	CCGC	2 cut(s)	268, 364
SspMI	CTAG	1 cut(s)	296
StuI	AGGCCT	2 cut(s)	395, 578
StyD4I	CCNGG	2 cut(s)	73, 470
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	1 cut(s)	708
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	3 cut(s)	94, 686, 789
TasI	AATT	3 cut(s)	65, 240, 309
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	767, 827
Tru9I	TTAA	2 cut(s)	767, 827
TscAI	CASTG	1 cut(s)	821
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	4 cut(s)	134, 217, 270, 524
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	3 cut(s)	17, 227, 657
TspGWI	ACGGA	1 cut(s)	388
TspRI	CASTG	1 cut(s)	821
VpaK11BI	GGWCC	2 cut(s)	265, 819
XceI	RCATGY	3 cut(s)	107, 505, 729
XhoI	CTCGAG	1 cut(s)	788
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.