MD13G1231400.v1.1

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011792
Physical Location & Seq
Reverse (-)
22985313 .. 22988074
2762 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1231400.v1.1.491

Sequence Viewer

Length: 900 bp
ATGACGAGCCCAAGGAATGGAGAGAGGACTGATCAGGTGCAGCAGCAGCAGCCTCCTCCTTACCATGTTCTTCACAAGCTGCCTCCTGGTGACAGCCCTTACGTCAGAGCCAAGCACGTCCAGTTAGTTCAGAAAGATCCCGAAGCGGCTATTGTACTGTTCTGGAAGGCAATAAATGCCGGTGATAGGGTGGATAGTTCCCTCAAAGACATGGCAGTGGTCATGAAGCAACAGGATAGAGCGGAAGAAGCAATTGAAGCAATAAAGTCTTTCAGGGATCGGTGCTCCAGGCAAGCACAGGAATCCCTTGACAATGTACTAATCGACTTGTACAAGAAATGTGGAAGAGTTGAGGAACAAATAGAGCTATTAAAACAGAAGCTTCGGATGATTTTCCAGGGAGAGGCCTTCAATGGCAAGCACACCAAGACAGCGCGCTCTCATGGAAGGAAATTCCAAGTCACAATCAAGCAAGAAACCTCCAGGATACTGGGCAACTTAGGTTGGGCATACATGCAACAAGGGAACCATACGGCTGCAGAAGTGGTGTATCGTAAGGCCCAAATCATCGACCCGGATGCAAACAAGGCCTGCAACTTATGCCTGTGCCTGATCAAGCAAAGAAGGTATGCCGAGGCGCAATCAGTTGTCGACCATGTGTTGAAGGGCATGCTTCCGGGATCTGATGAGCCCAAGTCAAAAGTTCGTGGCGAGGAACTGGTGCAGGAGCTAGAGCAATGTCAACGTGTAGTTTTGCCTTCCAATTCGTTTAGTTTAAATATGGAAGATGCCTTTCTCGAGGGGCTTGACCACTTGGTGAAGCAATGGACTCCTCAAAGGTCGAGGAGACTTGCTATATTTGAAGAGATATCGTCGTTTAGAGATCAGTTAGCTTGCTGA

Protein Analysis

300

Amino Acids

34.16

Weight (kDa)

8.75

Isoelectric Point (pI)

51.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 162 - 193 3.4e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011792)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04770
fragaria_vesca FvH4_4g05910 FvH4_4g05910
malus_domestica MD13G1231400.v1.1
prunus_persica Prupe.1G061500_v2.0.a1
pyrus_communis pycom13g20430
rosa_chinensis RchiOBHm_Chr4g0397051
rosa_laevigata RLG00000009453
rosa_multiflora Rmu_sc0007785.1_g000009
rosa_roxburghii Rroxscaffold_5G00342050
rosa_rugosa Rorug03G0345200 Rorug03G0345300 Rorug03G0345400
rosa_samantha Rh4AG076800 Rh4BG072700 Rh4CG081700 Rh4DG070200
rosa_wichuraiana Rw0G020190 Rw4G006180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 651
AccII CGCG 1 cut(s) 436
AciI CCGC 2 cut(s) 146, 242
AclWI GGATC 3 cut(s) 131, 285, 688
AcsI RAATTY 1 cut(s) 452
AdeI CACNNNGTG 1 cut(s) 817
AfaI GTAC 3 cut(s) 156, 318, 332
AfiI CCNNNNNNNGG 3 cut(s) 17, 186, 403
AflIII ACRYGT 1 cut(s) 745
AgsI TTSAA 4 cut(s) 257, 412, 664, 863
AjiI CACGTC 1 cut(s) 118
AjnI CCWGG 4 cut(s) 85, 287, 396, 482
AluBI AGCT 5 cut(s) 79, 367, 382, 730, 893
AluI AGCT 5 cut(s) 79, 367, 382, 730, 893
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 841
AlwI GGATC 3 cut(s) 131, 285, 688
Ama87I CYCGRG 1 cut(s) 797
AoxI GGCC 3 cut(s) 405, 558, 588
ApeKI GCWGC 6 cut(s) 40, 43, 46, 49, 79, 536
ApoI RAATTY 1 cut(s) 452
AspLEI GCGC 3 cut(s) 436, 438, 640
AspS9I GGNCC 1 cut(s) 559
AsuC2I CCSGG 2 cut(s) 575, 678
AsuHPI GGTGA 3 cut(s) 101, 194, 829
AvaI CYCGRG 1 cut(s) 797
BanII GRGCYC 2 cut(s) 11, 693
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 6 cut(s) 52, 55, 58, 61, 66, 523
BceAI ACGGC 1 cut(s) 549
BcgI CGANNNNNNTGC 2 cut(s) 560, 594
BciT130I CCWGG 4 cut(s) 87, 289, 398, 484
BciVI GTATCC 1 cut(s) 480
BclI TGATCA 2 cut(s) 31, 612
BcnI CCSGG 2 cut(s) 575, 678
BcoDI GTCTC 1 cut(s) 841
BfaI CTAG 1 cut(s) 731
BfmI CTRYAG 1 cut(s) 537
BfuI GTATCC 1 cut(s) 480
BisI GCNGC 7 cut(s) 41, 44, 47, 50, 80, 147, 537
BlsI GCNGC 7 cut(s) 42, 45, 48, 51, 81, 148, 538
Bme1390I CCNGG 6 cut(s) 87, 289, 398, 484, 575, 678
BmeT110I CYCGRG 1 cut(s) 797
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 559
BmiI GGNNCC 1 cut(s) 527
BmrFI CCNGG 6 cut(s) 87, 289, 398, 484, 575, 678
BmrI ACTGGG 1 cut(s) 500
BmsI GCATC 2 cut(s) 568, 778
BmuI ACTGGG 1 cut(s) 500
BpmI CTGGAG 2 cut(s) 271, 466
BpuMI CCSGG 2 cut(s) 575, 678
BsaJI CCNNGG 3 cut(s) 11, 397, 633
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 186, 403
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 3 cut(s) 121, 495, 723
Bse3DI GCAATG 2 cut(s) 743, 830
BseBI CCWGG 4 cut(s) 87, 289, 398, 484
BseDI CCNNGG 3 cut(s) 11, 397, 633
BseGI GGATG 2 cut(s) 393, 583
BseLI CCNNNNNNNGG 3 cut(s) 17, 186, 403
BseMI GCAATG 2 cut(s) 743, 830
BseNI ACTGG 3 cut(s) 121, 495, 723
BsePI GCGCGC 1 cut(s) 434
BseRI GAGGAG 3 cut(s) 45, 822, 859
BseXI GCAGC 6 cut(s) 52, 55, 58, 61, 66, 523
BsgI GTGCAG 2 cut(s) 59, 743
Bsh1236I CGCG 1 cut(s) 436
BshFI GGCC 3 cut(s) 407, 560, 590
BsiHKAI GWGCWC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 797
BsiSI CCGG 3 cut(s) 180, 575, 677
BslI CCNNNNNNNGG 3 cut(s) 17, 186, 403
BsmAI GTCTC 1 cut(s) 841
BsnI GGCC 3 cut(s) 407, 560, 590
BsoBI CYCGRG 1 cut(s) 797
Bsp1286I GDGCHC 3 cut(s) 11, 287, 693
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 6 cut(s) 31, 136, 277, 612, 680, 883
BspACI CCGC 2 cut(s) 146, 242
BspANI GGCC 3 cut(s) 407, 560, 590
BspFNI CGCG 1 cut(s) 436
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 527
BspMAI CTGCAG 1 cut(s) 541
BspPI GGATC 3 cut(s) 131, 285, 688
BsrBI CCGCTC 1 cut(s) 242
BsrDI GCAATG 2 cut(s) 743, 830
BsrFI RCCGGY 1 cut(s) 179
BsrGI TGTACA 1 cut(s) 330
BsrI ACTGG 3 cut(s) 121, 495, 723
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 3 cut(s) 11, 397, 633
BssHII GCGCGC 1 cut(s) 434
BssMI GATC 6 cut(s) 31, 136, 277, 612, 680, 883
BssT1I CCWWGG 1 cut(s) 11
Bst2UI CCWGG 4 cut(s) 87, 289, 398, 484
Bst4CI ACNGT 1 cut(s) 159
Bst6I CTCTTC 2 cut(s) 340, 858
BstAPI GCANNNNNTGC 2 cut(s) 176, 600
BstAUI TGTACA 1 cut(s) 330
BstC8I GCNNGC 6 cut(s) 294, 419, 436, 592, 671, 895
BstDEI CTNAG 1 cut(s) 499
BstF5I GGATG 2 cut(s) 393, 583
BstFNI CGCG 1 cut(s) 436
BstHHI GCGC 3 cut(s) 436, 438, 640
BstKTI GATC 6 cut(s) 34, 139, 280, 615, 683, 886
BstMAI GTCTC 1 cut(s) 841
BstMBI GATC 6 cut(s) 31, 136, 277, 612, 680, 883
BstMWI GCNNNNNNNGC 7 cut(s) 46, 49, 176, 248, 257, 587, 600
BstNI CCWGG 4 cut(s) 87, 289, 398, 484
BstNSI RCATGY 2 cut(s) 517, 673
BstSCI CCNGG 6 cut(s) 85, 287, 396, 482, 573, 676
BstSFI CTRYAG 1 cut(s) 537
BstUI CGCG 1 cut(s) 436
BstV1I GCAGC 6 cut(s) 52, 55, 58, 61, 66, 523
BstX2I RGATCY 2 cut(s) 136, 680
BstXI CCANNNNNNTGG 1 cut(s) 490
BstYI RGATCY 2 cut(s) 136, 680
BsuI GTATCC 1 cut(s) 480
BsuRI GGCC 3 cut(s) 407, 560, 590
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 2 cut(s) 393, 583
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 6 cut(s) 294, 419, 436, 592, 671, 895
CciI TCATGA 1 cut(s) 222
CfoI GCGC 3 cut(s) 436, 438, 640
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 559
Csp6I GTAC 3 cut(s) 155, 317, 331
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 7 cut(s) 65, 211, 223, 443, 514, 656, 670
CviQI GTAC 3 cut(s) 155, 317, 331
DdeI CTNAG 1 cut(s) 499
DpnI GATC 6 cut(s) 33, 138, 279, 614, 682, 885
DpnII GATC 6 cut(s) 31, 136, 277, 612, 680, 883
DraI TTTAAA 1 cut(s) 777
DraIII CACNNNGTG 1 cut(s) 817
Eam1104I CTCTTC 2 cut(s) 340, 858
EarI CTCTTC 2 cut(s) 340, 858
Eco130I CCWWGG 1 cut(s) 11
Eco147I AGGCCT 2 cut(s) 407, 590
Eco24I GRGCYC 2 cut(s) 11, 693
Eco32I GATATC 1 cut(s) 870
Eco88I CYCGRG 1 cut(s) 797
EcoRII CCWGG 4 cut(s) 85, 287, 396, 482
EcoRV GATATC 1 cut(s) 870
EcoT14I CCWWGG 1 cut(s) 11
EcoT38I GRGCYC 2 cut(s) 11, 693
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 7 cut(s) 68, 214, 226, 446, 517, 659, 673
FatI CATG 7 cut(s) 64, 210, 222, 442, 513, 655, 669
FbaI TGATCA 2 cut(s) 31, 612
FblI GTMKAC 1 cut(s) 651
Fnu4HI GCNGC 7 cut(s) 41, 44, 47, 50, 80, 147, 537
FokI GGATG 2 cut(s) 400, 590
FriOI GRGCYC 2 cut(s) 11, 693
Fsp4HI GCNGC 7 cut(s) 41, 44, 47, 50, 80, 147, 537
FspBI CTAG 1 cut(s) 731
GlaI GCGC 3 cut(s) 435, 437, 639
GluI GCNGC 7 cut(s) 41, 44, 47, 50, 80, 147, 537
GsuI CTGGAG 2 cut(s) 271, 466
HaeIII GGCC 3 cut(s) 407, 560, 590
HapII CCGG 3 cut(s) 180, 575, 677
HhaI GCGC 3 cut(s) 436, 438, 640
Hin1II CATG 7 cut(s) 68, 214, 226, 446, 517, 659, 673
Hin6I GCGC 3 cut(s) 434, 436, 638
HinP1I GCGC 3 cut(s) 434, 436, 638
HincII GTYRAC 2 cut(s) 652, 743
HindII GTYRAC 2 cut(s) 652, 743
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 2 cut(s) 302, 829
HpaII CCGG 3 cut(s) 180, 575, 677
HphI GGTGA 3 cut(s) 101, 194, 829
Hpy166II GTNNAC 2 cut(s) 652, 743
Hpy188I TCNGA 4 cut(s) 107, 132, 387, 685
Hpy188III TCNNGA 4 cut(s) 140, 163, 223, 797
Hpy8I GTNNAC 2 cut(s) 652, 743
Hpy99I CGWCG 1 cut(s) 877
HpyAV CCTTC 6 cut(s) 160, 418, 441, 618, 658, 768
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4IV ACGT 3 cut(s) 102, 117, 745
HpyCH4V TGCA 6 cut(s) 40, 517, 539, 581, 594, 724
HpyF10VI GCNNNNNNNGC 7 cut(s) 46, 49, 176, 248, 257, 587, 600
HpyF3I CTNAG 1 cut(s) 499
HpySE526I ACGT 3 cut(s) 102, 117, 745
Hsp92II CATG 7 cut(s) 68, 214, 226, 446, 517, 659, 673
HspAI GCGC 3 cut(s) 434, 436, 638
Ksp22I TGATCA 2 cut(s) 31, 612
Kzo9I GATC 6 cut(s) 31, 136, 277, 612, 680, 883
LmnI GCTCC 2 cut(s) 290, 727
Lsp1109I GCAGC 6 cut(s) 52, 55, 58, 61, 66, 523
LweI GCATC 2 cut(s) 568, 778
MaeI CTAG 1 cut(s) 731
MaeII ACGT 3 cut(s) 102, 117, 745
MaeIII GTNAC 2 cut(s) 89, 460
MalI GATC 6 cut(s) 33, 138, 279, 614, 682, 885
MbiI CCGCTC 1 cut(s) 242
MboI GATC 6 cut(s) 31, 136, 277, 612, 680, 883
MboII GAAGA 5 cut(s) 62, 257, 357, 797, 875
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 2 cut(s) 136, 680
MhlI GDGCHC 3 cut(s) 11, 287, 693
MluCI AATT 3 cut(s) 252, 452, 763
MlyI GAGTC 1 cut(s) 823
MseI TTAA 2 cut(s) 371, 776
MslI CAYNNNNRTG 1 cut(s) 215
MspI CCGG 3 cut(s) 180, 575, 677
MspR9I CCNGG 6 cut(s) 87, 289, 398, 484, 575, 678
MunI CAATTG 1 cut(s) 252
MvaI CCWGG 4 cut(s) 87, 289, 398, 484
MvnI CGCG 1 cut(s) 436
MwoI GCNNNNNNNGC 7 cut(s) 46, 49, 176, 248, 257, 587, 600
NciI CCSGG 2 cut(s) 575, 678
NdeII GATC 6 cut(s) 31, 136, 277, 612, 680, 883
NlaIII CATG 7 cut(s) 68, 214, 226, 446, 517, 659, 673
NlaIV GGNNCC 1 cut(s) 527
NmeAIII GCCGAG 1 cut(s) 658
NmuCI GTSAC 2 cut(s) 89, 460
NspI RCATGY 2 cut(s) 517, 673
PaeI GCATGC 1 cut(s) 673
PaeR7I CTCGAG 1 cut(s) 797
PagI TCATGA 1 cut(s) 222
PauI GCGCGC 1 cut(s) 434
PceI AGGCCT 2 cut(s) 407, 590
PfeI GAWTC 1 cut(s) 302
PflMI CCANNNNNTGG 1 cut(s) 17
PfoI TCCNGGA 2 cut(s) 482, 676
PkrI GCNGC 7 cut(s) 42, 45, 48, 51, 81, 148, 538
PleI GAGTC 1 cut(s) 823
PpsI GAGTC 1 cut(s) 823
Psp6I CCWGG 4 cut(s) 85, 287, 396, 482
PspGI CCWGG 4 cut(s) 85, 287, 396, 482
PspN4I GGNNCC 1 cut(s) 527
PspPI GGNCC 1 cut(s) 559
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 2 cut(s) 136, 680
PteI GCGCGC 1 cut(s) 434
RsaI GTAC 3 cut(s) 156, 318, 332
RsaNI GTAC 3 cut(s) 155, 317, 331
RseI CAYNNNNRTG 1 cut(s) 215
SalI GTCGAC 1 cut(s) 650
SaqAI TTAA 2 cut(s) 371, 776
SatI GCNGC 7 cut(s) 41, 44, 47, 50, 80, 147, 537
Sau3AI GATC 6 cut(s) 31, 136, 277, 612, 680, 883
Sau96I GGNCC 1 cut(s) 559
SchI GAGTC 1 cut(s) 823
ScrFI CCNGG 6 cut(s) 87, 289, 398, 484, 575, 678
SduI GDGCHC 3 cut(s) 11, 287, 693
SfaNI GCATC 2 cut(s) 568, 778
SfcI CTRYAG 1 cut(s) 537
Sfr274I CTCGAG 1 cut(s) 797
SlaI CTCGAG 1 cut(s) 797
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 797
SmoI CTYRAG 1 cut(s) 797
SphI GCATGC 1 cut(s) 673
Sse9I AATT 3 cut(s) 252, 452, 763
SseBI AGGCCT 2 cut(s) 407, 590
SsiI CCGC 2 cut(s) 146, 242
SspMI CTAG 1 cut(s) 731
StuI AGGCCT 2 cut(s) 407, 590
StyD4I CCNGG 6 cut(s) 85, 287, 396, 482, 573, 676
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 1 cut(s) 159
TaiI ACGT 3 cut(s) 105, 120, 748
TaqI TCGA 5 cut(s) 324, 570, 651, 798, 842
TasI AATT 3 cut(s) 252, 452, 763
TatI WGTACW 3 cut(s) 154, 316, 330
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 2 cut(s) 371, 776
Tru9I TTAA 2 cut(s) 371, 776
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 2 cut(s) 89, 460
TseI GCWGC 6 cut(s) 40, 43, 46, 49, 79, 536
Tsp45I GTSAC 2 cut(s) 89, 460
TspDTI ATGAA 1 cut(s) 239
TspRI CASTG 1 cut(s) 222
Van91I CCANNNNNTGG 1 cut(s) 17
XapI RAATTY 1 cut(s) 452
XceI RCATGY 2 cut(s) 517, 673
XhoI CTCGAG 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 651
XspI CTAG 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.