Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011792

Physical Location & Seq

Genomic Coordinates Forward (+)

41708483 .. 41709494

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0345300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGAAACAAAGATCAGTCAGATGCAGGAGTTTAAGGCGCTACAAAGGGAATTGGGGTTTGCTTATTCCAAAGCAGTTTTGAGTGAAGGACAAGCTGGAGGTCCAGGGCTTTTTTGGATAGATGATGTGGAGGATTTATGCGATTTGGACTCTCTACCTTGGGTTATCATAGGAGATTTCAATGATATTTTGAACAACAGTGAGAAACTGAATGGTCCTATGCGTCCTGAACGTCAAATGAGGGGCTTTAGAGATGCATTGGGATATAGTGAATTGGTTGGTTTGGACTTTCAAGGTGCAAAGATGACATGGTGGAATTCGGAGATTGAATTGAGGCTAGATAGAGCAGTTGGCACGGCAACCTGGAATGACATATTTGGTTTTTCTAGGGTTAGGAATCTACCTCCTAGCGACTCAGATCATTCACCTATTCTGTTGCAACGTGCCAAGGTGACATGGTTACAAGAGGGGGATATGAATTCCGGTTTCTTTCATAGAAAAGTTGCTAACCGAAAGAGGAAGAATGCTCTGCTAGAGCTTAAGAGTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0006950 GO:0006996 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0009991 GO:0010438 GO:0010439 GO:0010675 GO:0016043 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0042762 GO:0043255 GO:0043455 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051716 GO:0062012 GO:0065007 GO:0071496 GO:0071840 GO:0080090 GO:1900376

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

183

Amino Acids

20.87

Weight (kDa)

5.49

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04770
fragaria_vesca	FvH4_4g05910 FvH4_4g05910
malus_domestica	MD13G1231400.v1.1
prunus_persica	Prupe.1G061500_v2.0.a1
pyrus_communis	pycom13g20430
rosa_chinensis	RchiOBHm_Chr4g0397051
rosa_laevigata	RLG00000009453
rosa_multiflora	Rmu_sc0007785.1_g000009
rosa_roxburghii	Rroxscaffold_5G00342050
rosa_rugosa	Rorug03G0345200 Rorug03G0345300 Rorug03G0345400
rosa_samantha	Rh4AG076800 Rh4BG072700 Rh4CG081700 Rh4DG070200
rosa_wichuraiana	Rw0G020190 Rw4G006180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	316, 478
AfaI	GTAC	1 cut(s)	547
AflII	CTTAAG	1 cut(s)	539
AgsI	TTSAA	4 cut(s)	181, 193, 293, 329
AjnI	CCWGG	2 cut(s)	103, 362
AluBI	AGCT	2 cut(s)	95, 538
AluI	AGCT	2 cut(s)	95, 538
ApoI	RAATTY	2 cut(s)	316, 478
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	101, 215
AsuHPI	GGTGA	2 cut(s)	417, 463
AvaII	GGWCC	2 cut(s)	101, 215
BceAI	ACGGC	1 cut(s)	372
BciT130I	CCWGG	2 cut(s)	105, 364
BfaI	CTAG	4 cut(s)	338, 387, 408, 533
BfoI	RGCGCY	1 cut(s)	41
BfrI	CTTAAG	1 cut(s)	539
BmcAI	AGTACT	1 cut(s)	547
Bme1390I	CCNGG	2 cut(s)	105, 364
Bme18I	GGWCC	2 cut(s)	101, 215
BmgT120I	GGNCC	2 cut(s)	101, 215
BmrFI	CCNGG	2 cut(s)	105, 364
BmsI	GCATC	2 cut(s)	12, 244
BpmI	CTGGAG	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	104, 158, 447
BsaWI	WCCGGW	1 cut(s)	482
BseBI	CCWGG	2 cut(s)	105, 364
BseDI	CCNNGG	3 cut(s)	104, 158, 447
BseMII	CTCAG	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	483
BsmI	GAATGC	1 cut(s)	529
Bsp143I	GATC	2 cut(s)	12, 418
BspCNI	CTCAG	1 cut(s)	428
BspTI	CTTAAG	1 cut(s)	539
BssECI	CCNNGG	3 cut(s)	104, 158, 447
BssMI	GATC	2 cut(s)	12, 418
BssT1I	CCWWGG	2 cut(s)	158, 447
Bst2UI	CCWGG	2 cut(s)	105, 364
Bst4CI	ACNGT	1 cut(s)	200
BstAFI	CTTAAG	1 cut(s)	539
BstDEI	CTNAG	2 cut(s)	415, 549
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	15, 421
BstMBI	GATC	2 cut(s)	12, 418
BstNI	CCWGG	2 cut(s)	105, 364
BstSCI	CCNGG	2 cut(s)	103, 362
BtsIMutI	CAGTG	1 cut(s)	205
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	101, 215
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	546
CviAII	CATG	2 cut(s)	309, 456
CviJI	RGCY	5 cut(s)	95, 109, 246, 337, 538
CviKI_1	RGCY	5 cut(s)	95, 109, 246, 337, 538
CviQI	GTAC	1 cut(s)	546
DdeI	CTNAG	2 cut(s)	415, 549
DpnI	GATC	2 cut(s)	14, 420
DpnII	GATC	2 cut(s)	12, 418
Eco130I	CCWWGG	2 cut(s)	158, 447
Eco47I	GGWCC	2 cut(s)	101, 215
EcoRI	GAATTC	2 cut(s)	316, 478
EcoRII	CCWGG	2 cut(s)	103, 362
EcoT14I	CCWWGG	2 cut(s)	158, 447
EcoT22I	ATGCAT	1 cut(s)	259
ErhI	CCWWGG	2 cut(s)	158, 447
FaeI	CATG	2 cut(s)	312, 459
FaiI	YATR	9 cut(s)	139, 170, 221, 267, 310, 374, 457, 476, 495
FatI	CATG	2 cut(s)	308, 455
FspBI	CTAG	4 cut(s)	338, 387, 408, 533
GlaI	GCGC	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	41
HapII	CCGG	1 cut(s)	483
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	312, 459
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	3 cut(s)	149, 397, 413
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	2 cut(s)	417, 463
Hpy188I	TCNGA	3 cut(s)	21, 322, 418
Hpy188III	TCNNGA	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	2 cut(s)	232, 442
HpyCH4V	TGCA	4 cut(s)	25, 257, 299, 439
HpyF3I	CTNAG	2 cut(s)	415, 549
HpySE526I	ACGT	2 cut(s)	232, 442
Hsp92II	CATG	2 cut(s)	312, 459
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	12, 418
LpnPI	CCDG	8 cut(s)	11, 81, 90, 117, 240, 349, 376, 496
LweI	GCATC	2 cut(s)	12, 244
MaeI	CTAG	4 cut(s)	338, 387, 408, 533
MaeII	ACGT	2 cut(s)	232, 442
MaeIII	GTNAC	2 cut(s)	451, 459
MalI	GATC	2 cut(s)	14, 420
MboI	GATC	2 cut(s)	12, 418
MboII	GAAGA	1 cut(s)	532
MluCI	AATT	5 cut(s)	50, 272, 316, 329, 478
MlyI	GAGTC	2 cut(s)	143, 407
MnlI	CCTC	7 cut(s)	92, 124, 234, 327, 414, 460, 510
Mph1103I	ATGCAT	1 cut(s)	259
MseI	TTAA	2 cut(s)	33, 540
MspCI	CTTAAG	1 cut(s)	539
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	2 cut(s)	105, 364
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	2 cut(s)	105, 364
NdeII	GATC	2 cut(s)	12, 418
NlaIII	CATG	2 cut(s)	312, 459
NmuCI	GTSAC	1 cut(s)	451
NsiI	ATGCAT	1 cut(s)	259
PctI	GAATGC	1 cut(s)	529
PfeI	GAWTC	1 cut(s)	397
PleI	GAGTC	2 cut(s)	143, 407
PpsI	GAGTC	2 cut(s)	143, 407
Psp6I	CCWGG	2 cut(s)	103, 362
PspGI	CCWGG	2 cut(s)	103, 362
PspPI	GGNCC	2 cut(s)	101, 215
RsaI	GTAC	1 cut(s)	547
RsaNI	GTAC	1 cut(s)	546
SaqAI	TTAA	2 cut(s)	33, 540
Sau3AI	GATC	2 cut(s)	12, 418
Sau96I	GGNCC	2 cut(s)	101, 215
ScaI	AGTACT	1 cut(s)	547
SchI	GAGTC	2 cut(s)	143, 407
ScrFI	CCNGG	2 cut(s)	105, 364
SfaNI	GCATC	2 cut(s)	12, 244
SinI	GGWCC	2 cut(s)	101, 215
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	5 cut(s)	50, 272, 316, 329, 478
SspMI	CTAG	4 cut(s)	338, 387, 408, 533
StyD4I	CCNGG	2 cut(s)	103, 362
StyI	CCWWGG	2 cut(s)	158, 447
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	2 cut(s)	235, 445
TasI	AATT	5 cut(s)	50, 272, 316, 329, 478
TatI	WGTACW	1 cut(s)	545
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	2 cut(s)	33, 540
Tru9I	TTAA	2 cut(s)	33, 540
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	2 cut(s)	482, 491
TspRI	CASTG	1 cut(s)	205
Vha464I	CTTAAG	1 cut(s)	539
VpaK11BI	GGWCC	2 cut(s)	101, 215
XapI	RAATTY	2 cut(s)	316, 478
XcmI	CCANNNNNNNNNTGG	1 cut(s)	111
XspI	CTAG	4 cut(s)	338, 387, 408, 533
ZrmI	AGTACT	1 cut(s)	547
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.