Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011792

Physical Location & Seq

Genomic Coordinates Reverse (-)

10767676 .. 10771631

Gene Structure 3956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00342050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAAGAGTCCGAGAAAAGGAGGAGAGGTTTCTCAAGACCCTCCTCCATACCATGTTCTTCACAAATTGCCTCCCGGTGATAGCCCTTATGTTCGAGCCAAACACGTCCAGATTAGTAAGATGGTCAGTAATGCTCAATTAAATTTAGTTGAGAAGGATCCAGAAGCCGCAATAGTGTTGTTTTGGAAGGCGATCAATGCTGGAGACAGGGTGGATAGTGCCCTAAAGGACATGGCAATAGTCATGAAGCAGCAAGACAGAGCAGATGAAGCAATTGAAGCAATAATGTCATTCAGGGATCGCTGCTCCAAGCAGGCACAGGAATCCCTAGATAACGTACTAATTGACTTGTACAAGAAATGTGGGAGAATGGAGGAGCAAATAGAGCTATTGAAGCAGAAGCTTCGAATGATTTACCAAGGAGAGGCCTTCAATGGTAAGCTTACCAAGACAGCACGCTCTCATGGAAGGAAGTTCCAGGTCACCATCAAGCAAGAGACCTCCAGGATACTGGGGAACTTAGGTTGGGCCTACATGCAACAAGGGAACCATGTGGCAGCAGAAGTGGTATATCACAAAGCTCAAATCATCGATCCAGATGCCAACAAGGCCTGTAACTTATGCCTCTGCCTGATCAGGCAAGCCCGGTATGCAGAGGCACGGTCAGTTCTTGATGAAGTGTTGCAGGGTAAGCTTTCAGGATCAAGTGAGGACAAGTCGAAAAAACGCGCTGCGGAACTGTTGCAGGAGCTAAAGCAATGCCAGCCTGTAGTCTTGTCATCCAATAATTCGTTAGGTTTAAATATAGAAGATGCTTTTCTGGAGGGGCTTGACCGGTTGGTGAAGCACTGGACCCCTTTAAGATCAAGAAGACTTCCCATCTTTGAAGAGATTTCTCCGCATAGGGATCAATTAGCGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0006950 GO:0006996 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0009991 GO:0010438 GO:0010439 GO:0010675 GO:0016043 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0042762 GO:0043255 GO:0043455 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051716 GO:0062012 GO:0065007 GO:0071496 GO:0071840 GO:0080090 GO:1900376

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

307

Amino Acids

34.68

Weight (kDa)

8.95

Isoelectric Point (pI)

57.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04770
fragaria_vesca	FvH4_4g05910 FvH4_4g05910
malus_domestica	MD13G1231400.v1.1
prunus_persica	Prupe.1G061500_v2.0.a1
pyrus_communis	pycom13g20430
rosa_chinensis	RchiOBHm_Chr4g0397051
rosa_laevigata	RLG00000009453
rosa_multiflora	Rmu_sc0007785.1_g000009
rosa_roxburghii	Rroxscaffold_5G00342050
rosa_rugosa	Rorug03G0345200 Rorug03G0345300 Rorug03G0345400
rosa_samantha	Rh4AG076800 Rh4BG072700 Rh4CG081700 Rh4DG070200
rosa_wichuraiana	Rw0G020190 Rw4G006180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	729
AciI	CCGC	3 cut(s)	168, 734, 899
AclWI	GGATC	6 cut(s)	152, 165, 306, 587, 709, 915
AcsI	RAATTY	1 cut(s)	142
AfaI	GTAC	2 cut(s)	339, 353
AfiI	CCNNNNNNNGG	2 cut(s)	17, 424
AflIII	ACRYGT	1 cut(s)	103
AgeI	ACCGGT	1 cut(s)	834
AgsI	TTSAA	4 cut(s)	278, 394, 433, 887
AjiI	CACGTC	1 cut(s)	106
AjnI	CCWGG	2 cut(s)	477, 503
AluBI	AGCT	6 cut(s)	388, 403, 442, 581, 694, 751
AluI	AGCT	6 cut(s)	388, 403, 442, 581, 694, 751
Alw26I	GTCTC	2 cut(s)	198, 491
AlwI	GGATC	6 cut(s)	152, 165, 306, 587, 709, 915
AoxI	GGCC	3 cut(s)	426, 528, 609
ApeKI	GCWGC	4 cut(s)	250, 303, 557, 731
ApoI	RAATTY	1 cut(s)	142
AsiGI	ACCGGT	1 cut(s)	834
AspLEI	GCGC	1 cut(s)	731
AspS9I	GGNCC	2 cut(s)	528, 852
AsuC2I	CCSGG	2 cut(s)	75, 646
AsuHPI	GGTGA	3 cut(s)	89, 475, 853
AsuII	TTCGAA	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	852
BaeGI	GKGCMC	1 cut(s)	223
BamHI	GGATCC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	877
BbvI	GCAGC	4 cut(s)	262, 290, 569, 718
BccI	CCATC	3 cut(s)	115, 494, 887
BcgI	CGANNNNNNTGC	4 cut(s)	386, 420, 581, 615
BciT130I	CCWGG	2 cut(s)	479, 505
BciVI	GTATCC	1 cut(s)	501
BclI	TGATCA	1 cut(s)	633
BcnI	CCSGG	2 cut(s)	75, 646
BcoDI	GTCTC	2 cut(s)	198, 491
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	768
BfuI	GTATCC	1 cut(s)	501
BglI	GCCNNNNNGGC	1 cut(s)	608
BisI	GCNGC	5 cut(s)	168, 251, 304, 558, 732
BlsI	GCNGC	5 cut(s)	169, 252, 305, 559, 733
Bme1390I	CCNGG	4 cut(s)	75, 479, 505, 646
Bme18I	GGWCC	1 cut(s)	852
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	2 cut(s)	528, 852
BmiI	GGNNCC	3 cut(s)	159, 548, 854
BmrFI	CCNGG	4 cut(s)	75, 479, 505, 646
BmrI	ACTGGG	1 cut(s)	521
BmsI	GCATC	2 cut(s)	589, 802
BmuI	ACTGGG	1 cut(s)	521
BpiI	GAAGAC	1 cut(s)	877
BpmI	CTGGAG	3 cut(s)	222, 487, 842
Bpu14I	TTCGAA	1 cut(s)	406
BpuEI	CTTGAG	1 cut(s)	18
BpuMI	CCSGG	2 cut(s)	75, 646
Bsa29I	ATCGAT	1 cut(s)	591
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	1 cut(s)	418
BsaWI	WCCGGW	1 cut(s)	834
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 195, 225
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 424
Bse118I	RCCGGY	1 cut(s)	834
Bse1I	ACTGG	2 cut(s)	516, 854
Bse3DI	GCAATG	1 cut(s)	764
BseBI	CCWGG	2 cut(s)	479, 505
BseCI	ATCGAT	1 cut(s)	591
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	1 cut(s)	779
BseLI	CCNNNNNNNGG	2 cut(s)	17, 424
BseMI	GCAATG	1 cut(s)	764
BseNI	ACTGG	2 cut(s)	516, 854
BseRI	GAGGAG	3 cut(s)	33, 36, 389
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	4 cut(s)	262, 290, 569, 718
Bsh1236I	CGCG	1 cut(s)	729
BshFI	GGCC	3 cut(s)	428, 530, 611
BshTI	ACCGGT	1 cut(s)	834
BshVI	ATCGAT	1 cut(s)	591
BsiSI	CCGG	3 cut(s)	75, 646, 835
BslI	CCNNNNNNNGG	2 cut(s)	17, 424
BsmAI	GTCTC	2 cut(s)	198, 491
BsnI	GGCC	3 cut(s)	428, 530, 611
Bso31I	GGTCTC	1 cut(s)	491
Bsp119I	TTCGAA	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp1407I	TGTACA	1 cut(s)	351
Bsp143I	GATC	8 cut(s)	157, 192, 298, 592, 633, 701, 863, 907
BspACI	CCGC	3 cut(s)	168, 734, 899
BspANI	GGCC	3 cut(s)	428, 530, 611
BspDI	ATCGAT	1 cut(s)	591
BspFNI	CGCG	1 cut(s)	729
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	3 cut(s)	159, 548, 854
BspPI	GGATC	6 cut(s)	152, 165, 306, 587, 709, 915
BspT104I	TTCGAA	1 cut(s)	406
BspTNI	GGTCTC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	764
BsrFI	RCCGGY	1 cut(s)	834
BsrGI	TGTACA	1 cut(s)	351
BsrI	ACTGG	2 cut(s)	516, 854
BssAI	RCCGGY	1 cut(s)	834
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	8 cut(s)	157, 192, 298, 592, 633, 701, 863, 907
BssT1I	CCWWGG	1 cut(s)	418
Bst2UI	CCWGG	2 cut(s)	479, 505
Bst4CI	ACNGT	2 cut(s)	663, 741
Bst6I	CTCTTC	1 cut(s)	882
BstAUI	TGTACA	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	406
BstC8I	GCNNGC	5 cut(s)	315, 457, 642, 764, 919
BstDEI	CTNAG	1 cut(s)	520
BstEII	GGTNACC	1 cut(s)	481
BstF5I	GGATG	1 cut(s)	779
BstFNI	CGCG	1 cut(s)	729
BstHHI	GCGC	1 cut(s)	731
BstKTI	GATC	8 cut(s)	160, 195, 301, 595, 636, 704, 866, 910
BstMAI	GTCTC	2 cut(s)	198, 491
BstMBI	GATC	8 cut(s)	157, 192, 298, 592, 633, 701, 863, 907
BstMWI	GCNNNNNNNGC	9 cut(s)	197, 269, 278, 385, 394, 608, 650, 691, 763
BstNI	CCWGG	2 cut(s)	479, 505
BstNSI	RCATGY	1 cut(s)	538
BstPI	GGTNACC	1 cut(s)	481
BstSCI	CCNGG	4 cut(s)	73, 477, 503, 644
BstSFI	CTRYAG	1 cut(s)	768
BstSLI	GKGCMC	1 cut(s)	223
BstUI	CGCG	1 cut(s)	729
BstV1I	GCAGC	4 cut(s)	262, 290, 569, 718
BstV2I	GAAGAC	1 cut(s)	877
BstX2I	RGATCY	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	157
Bsu15I	ATCGAT	1 cut(s)	591
BsuI	GTATCC	1 cut(s)	501
BsuRI	GGCC	3 cut(s)	428, 530, 611
BsuTUI	ATCGAT	1 cut(s)	591
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	779
BtsIMutI	CAGTG	1 cut(s)	847
Cac8I	GCNNGC	5 cut(s)	315, 457, 642, 764, 919
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	1 cut(s)	731
Cfr10I	RCCGGY	1 cut(s)	834
Cfr13I	GGNCC	2 cut(s)	528, 852
ClaI	ATCGAT	1 cut(s)	591
Csp6I	GTAC	2 cut(s)	338, 352
CspAI	ACCGGT	1 cut(s)	834
CspCI	CAANNNNNGTGG	2 cut(s)	343, 378
CviAII	CATG	6 cut(s)	53, 232, 244, 464, 535, 551
CviQI	GTAC	2 cut(s)	338, 352
DdeI	CTNAG	1 cut(s)	520
DpnI	GATC	8 cut(s)	159, 194, 300, 594, 635, 703, 865, 909
DpnII	GATC	8 cut(s)	157, 192, 298, 592, 633, 701, 863, 907
DraI	TTTAAA	1 cut(s)	801
Eam1104I	CTCTTC	1 cut(s)	882
EarI	CTCTTC	1 cut(s)	882
Eco130I	CCWWGG	1 cut(s)	418
Eco147I	AGGCCT	2 cut(s)	428, 611
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	852
Eco91I	GGTNACC	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	481
EcoRII	CCWGG	2 cut(s)	477, 503
EcoT14I	CCWWGG	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	6 cut(s)	56, 235, 247, 467, 538, 554
FatI	CATG	6 cut(s)	52, 231, 243, 463, 534, 550
FbaI	TGATCA	1 cut(s)	633
Fnu4HI	GCNGC	5 cut(s)	168, 251, 304, 558, 732
FokI	GGATG	1 cut(s)	766
Fsp4HI	GCNGC	5 cut(s)	168, 251, 304, 558, 732
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	1 cut(s)	730
GluI	GCNGC	5 cut(s)	168, 251, 304, 558, 732
GsuI	CTGGAG	3 cut(s)	222, 487, 842
HaeIII	GGCC	3 cut(s)	428, 530, 611
HapII	CCGG	3 cut(s)	75, 646, 835
HhaI	GCGC	1 cut(s)	731
Hin1II	CATG	6 cut(s)	56, 235, 247, 467, 538, 554
Hin6I	GCGC	1 cut(s)	729
HinP1I	GCGC	1 cut(s)	729
HindIII	AAGCTT	3 cut(s)	401, 440, 692
HinfI	GANTC	2 cut(s)	7, 323
HpaII	CCGG	3 cut(s)	75, 646, 835
HphI	GGTGA	3 cut(s)	89, 475, 853
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	9 cut(s)	35, 109, 161, 244, 596, 671, 699, 821, 867
HpyAV	CCTTC	4 cut(s)	148, 181, 439, 462
HpyCH4III	ACNGT	2 cut(s)	663, 741
HpyCH4IV	ACGT	2 cut(s)	105, 336
HpyCH4V	TGCA	4 cut(s)	538, 653, 685, 745
HpyF10VI	GCNNNNNNNGC	9 cut(s)	197, 269, 278, 385, 394, 608, 650, 691, 763
HpyF3I	CTNAG	1 cut(s)	520
HpySE526I	ACGT	2 cut(s)	105, 336
Hsp92II	CATG	6 cut(s)	56, 235, 247, 467, 538, 554
HspAI	GCGC	1 cut(s)	729
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	8 cut(s)	157, 192, 298, 592, 633, 701, 863, 907
LmnI	GCTCC	3 cut(s)	311, 376, 748
Lsp1109I	GCAGC	4 cut(s)	262, 290, 569, 718
LweI	GCATC	2 cut(s)	589, 802
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	2 cut(s)	105, 336
MaeIII	GTNAC	2 cut(s)	481, 614
MalI	GATC	8 cut(s)	159, 194, 300, 594, 635, 703, 865, 909
MboI	GATC	8 cut(s)	157, 192, 298, 592, 633, 701, 863, 907
MboII	GAAGA	5 cut(s)	16, 50, 821, 882, 899
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	7 cut(s)	65, 137, 142, 273, 342, 787, 911
MlyI	GAGTC	1 cut(s)	16
MseI	TTAA	3 cut(s)	140, 800, 860
MspI	CCGG	3 cut(s)	75, 646, 835
MspR9I	CCNGG	4 cut(s)	75, 479, 505, 646
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	2 cut(s)	479, 505
MvnI	CGCG	1 cut(s)	729
MwoI	GCNNNNNNNGC	9 cut(s)	197, 269, 278, 385, 394, 608, 650, 691, 763
NciI	CCSGG	2 cut(s)	75, 646
NdeII	GATC	8 cut(s)	157, 192, 298, 592, 633, 701, 863, 907
NlaIII	CATG	6 cut(s)	56, 235, 247, 467, 538, 554
NlaIV	GGNNCC	3 cut(s)	159, 548, 854
NmuCI	GTSAC	1 cut(s)	481
NspI	RCATGY	1 cut(s)	538
NspV	TTCGAA	1 cut(s)	406
PagI	TCATGA	1 cut(s)	243
PceI	AGGCCT	2 cut(s)	428, 611
PfeI	GAWTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	503
PinAI	ACCGGT	1 cut(s)	834
PkrI	GCNGC	5 cut(s)	169, 252, 305, 559, 733
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
Psp6I	CCWGG	2 cut(s)	477, 503
PspEI	GGTNACC	1 cut(s)	481
PspGI	CCWGG	2 cut(s)	477, 503
PspN4I	GGNNCC	3 cut(s)	159, 548, 854
PspPI	GGNCC	2 cut(s)	528, 852
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	2 cut(s)	339, 353
RsaNI	GTAC	2 cut(s)	338, 352
SaqAI	TTAA	3 cut(s)	140, 800, 860
SatI	GCNGC	5 cut(s)	168, 251, 304, 558, 732
Sau3AI	GATC	8 cut(s)	157, 192, 298, 592, 633, 701, 863, 907
Sau96I	GGNCC	2 cut(s)	528, 852
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	4 cut(s)	75, 479, 505, 646
SduI	GDGCHC	1 cut(s)	223
SfaNI	GCATC	2 cut(s)	589, 802
SfcI	CTRYAG	1 cut(s)	768
SfuI	TTCGAA	1 cut(s)	406
SinI	GGWCC	1 cut(s)	852
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
Sse9I	AATT	7 cut(s)	65, 137, 142, 273, 342, 787, 911
SseBI	AGGCCT	2 cut(s)	428, 611
SsiI	CCGC	3 cut(s)	168, 734, 899
SspMI	CTAG	1 cut(s)	329
StuI	AGGCCT	2 cut(s)	428, 611
StyD4I	CCNGG	4 cut(s)	73, 477, 503, 644
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	2 cut(s)	663, 741
TaiI	ACGT	2 cut(s)	108, 339
TaqI	TCGA	4 cut(s)	94, 406, 591, 719
TasI	AATT	7 cut(s)	65, 137, 142, 273, 342, 787, 911
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	3 cut(s)	140, 800, 860
Tru9I	TTAA	3 cut(s)	140, 800, 860
TscAI	CASTG	1 cut(s)	854
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	4 cut(s)	250, 303, 557, 731
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	4 cut(s)	17, 260, 282, 690
TspRI	CASTG	1 cut(s)	854
VpaK11BI	GGWCC	1 cut(s)	852
XapI	RAATTY	1 cut(s)	142
XceI	RCATGY	1 cut(s)	538
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.