Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011792

Physical Location & Seq

Genomic Coordinates Reverse (-)

4354076 .. 4357579

Gene Structure 3504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G061500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGACGAGCCCGAGAAAAGGAGAGAGGGCCGATCAGGTGCAAGTGCAGCAGGATCCTCCTTACCATGTTCTTCATAAGCTGCCTCCTGGTGACAGCCCCTACGTCAGAGCCAAGCACGTTCAGTTAGTTCAGAAGGATCCAGAAGCAGCTATAGTTTTATTCTGGAAGGCGATAAACGCTGGAGATAGGGTGGATAGTGCCCTCAAAGACATGGCAGTAGTCATGAAGCAGCAAGATAGAGCAGAAGAAGCAATTGAAGCAATAAAGTCTTTCAGGGATCGCTGCTCTAAGCAGGCACAAGAATCCCTAGACAATGTACTAATTGACTTGTACAAGAAATGTGGTAGAGTTGAGGAGCAAATAGAGCTACTGAAGCAGAAGCTTTGGATGATTTACCAGGGAGAGGCCTTCAATGGTAAGCTTACCAAGACAGCGCGCTCCCACGGAAGGAAGTTTCAAGTCACAATCAAGAAAGAGACTTCCAGGATACTGGGGAACTTGGGTTGGGCCTACATGCAACAAGGGAACCATGTGGCTGCAGAAGTGGTGTATCGTAAAGCCCAAATCGTTGACCCAGACGCCAACAAGGCCTGCAACCTATGCCTATGCCTGATCAAGCAAACACGGTACGTCGAGGCACAATCAGTTCTTGATGATGTCTTGCAGGGCGCGCTTTCAGGATCTGATGAGCCCAAATCAAAAATTCGCGCCAAGGAACTGCTCCAGGAGCTAGAGCAATGTCAAACTGTAGTTTTGTCATCGAATTCATTGAGTTTAAATATAGAGGATGCTTTTCTGGAGGGGCTTGATCACTTGATGAAGCACTGGACCCCTCTAAGGTCTAGGAGACTTCCTATCTTTGAAGAGATTTCTTCATTTAGAGATCAATTAGCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0006950 GO:0006996 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0009991 GO:0010438 GO:0010439 GO:0010675 GO:0016043 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0042762 GO:0043255 GO:0043455 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051716 GO:0062012 GO:0065007 GO:0071496 GO:0071840 GO:0080090 GO:1900376

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

300

Amino Acids

33.97

Weight (kDa)

8.37

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04770
fragaria_vesca	FvH4_4g05910 FvH4_4g05910
malus_domestica	MD13G1231400.v1.1
prunus_persica	Prupe.1G061500_v2.0.a1
pyrus_communis	pycom13g20430
rosa_chinensis	RchiOBHm_Chr4g0397051
rosa_laevigata	RLG00000009453
rosa_multiflora	Rmu_sc0007785.1_g000009
rosa_roxburghii	Rroxscaffold_5G00342050
rosa_rugosa	Rorug03G0345200 Rorug03G0345300 Rorug03G0345400
rosa_samantha	Rh4AG076800 Rh4BG072700 Rh4CG081700 Rh4DG070200
rosa_wichuraiana	Rw0G020190 Rw4G006180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	436, 671, 708
AclWI	GGATC	6 cut(s)	47, 60, 131, 144, 285, 688
AcsI	RAATTY	2 cut(s)	702, 763
AcuI	CTGAAG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	579
AfaI	GTAC	3 cut(s)	318, 332, 629
AfiI	CCNNNNNNNGG	4 cut(s)	17, 403, 447, 837
AgsI	TTSAA	4 cut(s)	257, 412, 458, 863
AjnI	CCWGG	4 cut(s)	85, 396, 482, 723
AluBI	AGCT	7 cut(s)	79, 149, 367, 382, 421, 730, 893
AluI	AGCT	7 cut(s)	79, 149, 367, 382, 421, 730, 893
Alw26I	GTCTC	2 cut(s)	470, 841
AlwI	GGATC	6 cut(s)	47, 60, 131, 144, 285, 688
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	10
AoxI	GGCC	4 cut(s)	27, 405, 507, 588
ApeKI	GCWGC	6 cut(s)	46, 79, 146, 229, 282, 536
ApoI	RAATTY	2 cut(s)	702, 763
AspLEI	GCGC	5 cut(s)	436, 438, 671, 673, 710
AspS9I	GGNCC	3 cut(s)	27, 507, 828
AsuHPI	GGTGA	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	828
BaeGI	GKGCMC	1 cut(s)	202
BamHI	GGATCC	2 cut(s)	52, 136
BanII	GRGCYC	2 cut(s)	11, 693
BbvI	GCAGC	6 cut(s)	58, 66, 158, 241, 269, 523
BciT130I	CCWGG	4 cut(s)	87, 398, 484, 725
BciVI	GTATCC	1 cut(s)	480
BclI	TGATCA	2 cut(s)	612, 808
BcoDI	GTCTC	2 cut(s)	470, 841
BfaI	CTAG	3 cut(s)	308, 731, 843
BfmI	CTRYAG	3 cut(s)	150, 537, 747
BfuI	GTATCC	1 cut(s)	480
BglI	GCCNNNNNGGC	1 cut(s)	587
BisI	GCNGC	6 cut(s)	47, 80, 147, 230, 283, 537
BlsI	GCNGC	6 cut(s)	48, 81, 148, 231, 284, 538
Bme1390I	CCNGG	4 cut(s)	87, 398, 484, 725
Bme18I	GGWCC	1 cut(s)	828
BmeT110I	CYCGRG	1 cut(s)	10
BmgT120I	GGNCC	3 cut(s)	27, 507, 828
BmiI	GGNNCC	4 cut(s)	54, 138, 527, 830
BmrFI	CCNGG	4 cut(s)	87, 398, 484, 725
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	1 cut(s)	778
BmuI	ACTGGG	1 cut(s)	500
BpmI	CTGGAG	3 cut(s)	201, 707, 818
BsaHI	GRCGYC	1 cut(s)	579
BsaJI	CCNNGG	3 cut(s)	397, 442, 711
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 403, 447, 837
Bse1I	ACTGG	2 cut(s)	495, 830
Bse3DI	GCAATG	1 cut(s)	743
BseBI	CCWGG	4 cut(s)	87, 398, 484, 725
BseDI	CCNNGG	3 cut(s)	397, 442, 711
BseGI	GGATG	2 cut(s)	393, 793
BseLI	CCNNNNNNNGG	4 cut(s)	17, 403, 447, 837
BseMI	GCAATG	1 cut(s)	743
BseNI	ACTGG	2 cut(s)	495, 830
BsePI	GCGCGC	2 cut(s)	434, 669
BseRI	GAGGAG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	6 cut(s)	58, 66, 158, 241, 269, 523
BsgI	GTGCAG	1 cut(s)	65
Bsh1236I	CGCG	3 cut(s)	436, 671, 708
BshFI	GGCC	4 cut(s)	29, 407, 509, 590
BsiHKCI	CYCGRG	1 cut(s)	10
BslI	CCNNNNNNNGG	4 cut(s)	17, 403, 447, 837
BsmAI	GTCTC	2 cut(s)	470, 841
BsnI	GGCC	4 cut(s)	29, 407, 509, 590
BsoBI	CYCGRG	1 cut(s)	10
Bsp1286I	GDGCHC	3 cut(s)	11, 202, 693
Bsp1407I	TGTACA	1 cut(s)	330
Bsp143I	GATC	8 cut(s)	31, 52, 136, 277, 612, 680, 808, 883
BspANI	GGCC	4 cut(s)	29, 407, 509, 590
BspFNI	CGCG	3 cut(s)	436, 671, 708
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	4 cut(s)	54, 138, 527, 830
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	6 cut(s)	47, 60, 131, 144, 285, 688
BsrDI	GCAATG	1 cut(s)	743
BsrGI	TGTACA	1 cut(s)	330
BsrI	ACTGG	2 cut(s)	495, 830
BssECI	CCNNGG	3 cut(s)	397, 442, 711
BssHII	GCGCGC	2 cut(s)	434, 669
BssMI	GATC	8 cut(s)	31, 52, 136, 277, 612, 680, 808, 883
BssNI	GRCGYC	1 cut(s)	579
BssT1I	CCWWGG	1 cut(s)	711
Bst2UI	CCWGG	4 cut(s)	87, 398, 484, 725
Bst4CI	ACNGT	2 cut(s)	627, 748
Bst6I	CTCTTC	1 cut(s)	858
BstACI	GRCGYC	1 cut(s)	579
BstAPI	GCANNNNNTGC	1 cut(s)	600
BstAUI	TGTACA	1 cut(s)	330
BstC8I	GCNNGC	4 cut(s)	294, 436, 592, 671
BstDEI	CTNAG	2 cut(s)	288, 836
BstDSI	CCRYGG	1 cut(s)	442
BstF5I	GGATG	2 cut(s)	393, 793
BstFNI	CGCG	3 cut(s)	436, 671, 708
BstHHI	GCGC	5 cut(s)	436, 438, 671, 673, 710
BstKTI	GATC	8 cut(s)	34, 55, 139, 280, 615, 683, 811, 886
BstMAI	GTCTC	2 cut(s)	470, 841
BstMBI	GATC	8 cut(s)	31, 52, 136, 277, 612, 680, 808, 883
BstNI	CCWGG	4 cut(s)	87, 398, 484, 725
BstNSI	RCATGY	1 cut(s)	517
BstSCI	CCNGG	4 cut(s)	85, 396, 482, 723
BstSFI	CTRYAG	3 cut(s)	150, 537, 747
BstSLI	GKGCMC	1 cut(s)	202
BstUI	CGCG	3 cut(s)	436, 671, 708
BstV1I	GCAGC	6 cut(s)	58, 66, 158, 241, 269, 523
BstX2I	RGATCY	3 cut(s)	52, 136, 680
BstXI	CCANNNNNNTGG	1 cut(s)	490
BstYI	RGATCY	3 cut(s)	52, 136, 680
BsuI	GTATCC	1 cut(s)	480
BsuRI	GGCC	4 cut(s)	29, 407, 509, 590
BtgI	CCRYGG	1 cut(s)	442
BtsCI	GGATG	2 cut(s)	393, 793
BtsIMutI	CAGTG	1 cut(s)	823
Cac8I	GCNNGC	4 cut(s)	294, 436, 592, 671
CaiI	CAGNNNCTG	1 cut(s)	683
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	5 cut(s)	436, 438, 671, 673, 710
Cfr13I	GGNCC	3 cut(s)	27, 507, 828
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	3 cut(s)	317, 331, 628
CspCI	CAANNNNNGTGG	2 cut(s)	322, 357
CviAII	CATG	5 cut(s)	65, 211, 223, 514, 530
CviQI	GTAC	3 cut(s)	317, 331, 628
DdeI	CTNAG	2 cut(s)	288, 836
DpnI	GATC	8 cut(s)	33, 54, 138, 279, 614, 682, 810, 885
DpnII	GATC	8 cut(s)	31, 52, 136, 277, 612, 680, 808, 883
DraI	TTTAAA	1 cut(s)	777
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
Eco130I	CCWWGG	1 cut(s)	711
Eco147I	AGGCCT	2 cut(s)	407, 590
Eco24I	GRGCYC	2 cut(s)	11, 693
Eco47I	GGWCC	1 cut(s)	828
Eco57I	CTGAAG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	763
EcoRII	CCWGG	4 cut(s)	85, 396, 482, 723
EcoT14I	CCWWGG	1 cut(s)	711
EcoT38I	GRGCYC	2 cut(s)	11, 693
ErhI	CCWWGG	1 cut(s)	711
FaeI	CATG	5 cut(s)	68, 214, 226, 517, 533
FatI	CATG	5 cut(s)	64, 210, 222, 513, 529
FbaI	TGATCA	2 cut(s)	612, 808
Fnu4HI	GCNGC	6 cut(s)	47, 80, 147, 230, 283, 537
FokI	GGATG	2 cut(s)	400, 800
FriOI	GRGCYC	2 cut(s)	11, 693
Fsp4HI	GCNGC	6 cut(s)	47, 80, 147, 230, 283, 537
FspBI	CTAG	3 cut(s)	308, 731, 843
GlaI	GCGC	5 cut(s)	435, 437, 670, 672, 709
GluI	GCNGC	6 cut(s)	47, 80, 147, 230, 283, 537
GsuI	CTGGAG	3 cut(s)	201, 707, 818
HaeIII	GGCC	4 cut(s)	29, 407, 509, 590
HgaI	GACGC	1 cut(s)	587
HhaI	GCGC	5 cut(s)	436, 438, 671, 673, 710
Hin1I	GRCGYC	1 cut(s)	579
Hin1II	CATG	5 cut(s)	68, 214, 226, 517, 533
Hin6I	GCGC	5 cut(s)	434, 436, 669, 671, 708
HinP1I	GCGC	5 cut(s)	434, 436, 669, 671, 708
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HindIII	AAGCTT	2 cut(s)	380, 419
HinfI	GANTC	1 cut(s)	302
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	3 cut(s)	107, 132, 685
Hpy188III	TCNNGA	7 cut(s)	140, 163, 223, 469, 650, 678, 797
Hpy8I	GTNNAC	1 cut(s)	571
Hpy99I	CGWCG	1 cut(s)	635
HpyAV	CCTTC	4 cut(s)	127, 160, 418, 441
HpyCH4III	ACNGT	2 cut(s)	627, 748
HpyCH4IV	ACGT	3 cut(s)	102, 117, 630
HpyCH4V	TGCA	6 cut(s)	40, 46, 517, 539, 594, 664
HpyF3I	CTNAG	2 cut(s)	288, 836
HpySE526I	ACGT	3 cut(s)	102, 117, 630
Hsp92I	GRCGYC	1 cut(s)	579
Hsp92II	CATG	5 cut(s)	68, 214, 226, 517, 533
HspAI	GCGC	5 cut(s)	434, 436, 669, 671, 708
Ksp22I	TGATCA	2 cut(s)	612, 808
Kzo9I	GATC	8 cut(s)	31, 52, 136, 277, 612, 680, 808, 883
LmnI	GCTCC	4 cut(s)	355, 443, 726, 727
Lsp1109I	GCAGC	6 cut(s)	58, 66, 158, 241, 269, 523
LweI	GCATC	1 cut(s)	778
MaeI	CTAG	3 cut(s)	308, 731, 843
MaeII	ACGT	3 cut(s)	102, 117, 630
MaeIII	GTNAC	2 cut(s)	89, 460
MalI	GATC	8 cut(s)	33, 54, 138, 279, 614, 682, 810, 885
MboI	GATC	8 cut(s)	31, 52, 136, 277, 612, 680, 808, 883
MboII	GAAGA	4 cut(s)	62, 257, 864, 875
MfeI	CAATTG	1 cut(s)	252
MflI	RGATCY	3 cut(s)	52, 136, 680
MhlI	GDGCHC	3 cut(s)	11, 202, 693
MluCI	AATT	5 cut(s)	252, 321, 702, 763, 887
MseI	TTAA	1 cut(s)	776
MspR9I	CCNGG	4 cut(s)	87, 398, 484, 725
MunI	CAATTG	1 cut(s)	252
MvaI	CCWGG	4 cut(s)	87, 398, 484, 725
MvnI	CGCG	3 cut(s)	436, 671, 708
NdeII	GATC	8 cut(s)	31, 52, 136, 277, 612, 680, 808, 883
NlaIII	CATG	5 cut(s)	68, 214, 226, 517, 533
NlaIV	GGNNCC	4 cut(s)	54, 138, 527, 830
NmuCI	GTSAC	2 cut(s)	89, 460
NspI	RCATGY	1 cut(s)	517
PagI	TCATGA	1 cut(s)	222
PauI	GCGCGC	2 cut(s)	434, 669
PceI	AGGCCT	2 cut(s)	407, 590
PfeI	GAWTC	1 cut(s)	302
PfoI	TCCNGGA	2 cut(s)	482, 723
PkrI	GCNGC	6 cut(s)	48, 81, 148, 231, 284, 538
Psp6I	CCWGG	4 cut(s)	85, 396, 482, 723
PspGI	CCWGG	4 cut(s)	85, 396, 482, 723
PspN4I	GGNNCC	4 cut(s)	54, 138, 527, 830
PspPI	GGNCC	3 cut(s)	27, 507, 828
PstI	CTGCAG	1 cut(s)	541
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	3 cut(s)	52, 136, 680
PteI	GCGCGC	2 cut(s)	434, 669
RsaI	GTAC	3 cut(s)	318, 332, 629
RsaNI	GTAC	3 cut(s)	317, 331, 628
SaqAI	TTAA	1 cut(s)	776
SatI	GCNGC	6 cut(s)	47, 80, 147, 230, 283, 537
Sau3AI	GATC	8 cut(s)	31, 52, 136, 277, 612, 680, 808, 883
Sau96I	GGNCC	3 cut(s)	27, 507, 828
ScrFI	CCNGG	4 cut(s)	87, 398, 484, 725
SduI	GDGCHC	3 cut(s)	11, 202, 693
SfaNI	GCATC	1 cut(s)	778
SfcI	CTRYAG	3 cut(s)	150, 537, 747
SinI	GGWCC	1 cut(s)	828
Sse9I	AATT	5 cut(s)	252, 321, 702, 763, 887
SseBI	AGGCCT	2 cut(s)	407, 590
SspMI	CTAG	3 cut(s)	308, 731, 843
StuI	AGGCCT	2 cut(s)	407, 590
StyD4I	CCNGG	4 cut(s)	85, 396, 482, 723
StyI	CCWWGG	1 cut(s)	711
TaaI	ACNGT	2 cut(s)	627, 748
TaiI	ACGT	3 cut(s)	105, 120, 633
TaqI	TCGA	2 cut(s)	633, 761
TasI	AATT	5 cut(s)	252, 321, 702, 763, 887
TatI	WGTACW	2 cut(s)	316, 330
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	776
Tru9I	TTAA	1 cut(s)	776
TscAI	CASTG	1 cut(s)	830
TseFI	GTSAC	2 cut(s)	89, 460
TseI	GCWGC	6 cut(s)	46, 79, 146, 229, 282, 536
Tsp45I	GTSAC	2 cut(s)	89, 460
TspDTI	ATGAA	5 cut(s)	62, 239, 756, 833, 864
TspGWI	ACGGA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	830
VpaK11BI	GGWCC	1 cut(s)	828
XapI	RAATTY	2 cut(s)	702, 763
XceI	RCATGY	1 cut(s)	517
XspI	CTAG	3 cut(s)	308, 731, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.