Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0011792

Physical Location & Seq

Genomic Coordinates Reverse (-)

12604649 .. 12607699

Gene Structure 3051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G006180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAAGAGTCCGAGAAAAGGAGGAGAGGTTTCTCAAGACCCTCCTCCATACCATGTTCTTCACAAATTGCCTCCTGGCGATAGCCCTTATGTTCGAGCCAAACACGTCCAGTTAGTTGAGAAGGATCCAGAAGCTGCAATAGTATTGTTTTGGAAGGCGATCAATGCTGGAGACAGGGTGGATAGTGCCCTAAAGGACATGGCAATAGTCATGAAGCAGCAAGACAGAGCAGATGAAGCAATTGAAGCAATAATGTCATTCAGGGATCGCTGCTCCAAGCAGGCACAGGAATCCCTAGATAACGTACTAATTGACTTGTACAAGAAATGTGGGAGAATGGAGGAGCAAATAGAGCTATTGAAGCAGAAGCTTCGAATGATTTACCAAGGAGAGGCCTTCAATGGTAAGCTTACCAAGACAGCACGCTCTCATGGAAGGAAGTTCCAGGTCACCATCAAGCAAGAGACCTCCAGGATACTGGGGAACTTAGGTTGGGCCTACATGCAACAAGGGAACCATGTGGCAGCAGAAGTGGTATATCACAAAGCTCAAATCATCGATCCAGATGCCAACAAGGCCTGTAACTTATGCCTCTGCCTGATCAGGCAAGCCCGGTATGCAGAGGCACGGTCAGTTCTTGATGAAGTGTTGCAGGGTAAGCTTTCAGGATCAAGTGAGGACAAGTCGAAAAAACGCGCTGCGGAACTGTTGCAGGAGCTAAAGCAATGCCAGCCTGTAGTCTTGTCATCCAATAATTCGTTAGGTTTAAATATAGAAGATGCTTTTCTGGAGGGGCTTGACCAGTTGGTGAAGCACTGGACCCCTTTAAGATCAAGAAGACTTCCCATCTTTGAAGAGATTTCTCCGCATAGGGATCAGTTAGCGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0006950 GO:0006996 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0009991 GO:0010438 GO:0010439 GO:0010675 GO:0016043 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0042762 GO:0043255 GO:0043455 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051716 GO:0062012 GO:0065007 GO:0071496 GO:0071840 GO:0080090 GO:1900376

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

296

Amino Acids

33.47

Weight (kDa)

8.72

Isoelectric Point (pI)

58.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04770
fragaria_vesca	FvH4_4g05910 FvH4_4g05910
malus_domestica	MD13G1231400.v1.1
prunus_persica	Prupe.1G061500_v2.0.a1
pyrus_communis	pycom13g20430
rosa_chinensis	RchiOBHm_Chr4g0397051
rosa_laevigata	RLG00000009453
rosa_multiflora	Rmu_sc0007785.1_g000009
rosa_roxburghii	Rroxscaffold_5G00342050
rosa_rugosa	Rorug03G0345200 Rorug03G0345300 Rorug03G0345400
rosa_samantha	Rh4AG076800 Rh4BG072700 Rh4CG081700 Rh4DG070200
rosa_wichuraiana	Rw0G020190 Rw4G006180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	696
AciI	CCGC	2 cut(s)	701, 866
AclWI	GGATC	6 cut(s)	119, 132, 273, 554, 676, 882
AfaI	GTAC	2 cut(s)	306, 320
AfiI	CCNNNNNNNGG	2 cut(s)	17, 391
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	4 cut(s)	245, 361, 400, 854
AjiI	CACGTC	1 cut(s)	106
AjnI	CCWGG	3 cut(s)	73, 444, 470
AluBI	AGCT	7 cut(s)	134, 355, 370, 409, 548, 661, 718
AluI	AGCT	7 cut(s)	134, 355, 370, 409, 548, 661, 718
Alw26I	GTCTC	2 cut(s)	165, 458
AlwI	GGATC	6 cut(s)	119, 132, 273, 554, 676, 882
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	3 cut(s)	393, 495, 576
ApeKI	GCWGC	5 cut(s)	134, 217, 270, 524, 698
AspLEI	GCGC	1 cut(s)	698
AspS9I	GGNCC	2 cut(s)	495, 819
AsuC2I	CCSGG	1 cut(s)	613
AsuHPI	GGTGA	2 cut(s)	442, 820
AsuII	TTCGAA	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	819
BaeGI	GKGCMC	1 cut(s)	190
BamHI	GGATCC	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	844
BbvI	GCAGC	5 cut(s)	121, 229, 257, 536, 685
BccI	CCATC	2 cut(s)	461, 854
BcgI	CGANNNNNNTGC	4 cut(s)	353, 387, 548, 582
BciT130I	CCWGG	3 cut(s)	75, 446, 472
BciVI	GTATCC	1 cut(s)	468
BclI	TGATCA	1 cut(s)	600
BcnI	CCSGG	1 cut(s)	613
BcoDI	GTCTC	2 cut(s)	165, 458
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	735
BfuI	GTATCC	1 cut(s)	468
BglI	GCCNNNNNGGC	1 cut(s)	575
BisI	GCNGC	5 cut(s)	135, 218, 271, 525, 699
BlsI	GCNGC	5 cut(s)	136, 219, 272, 526, 700
Bme1390I	CCNGG	4 cut(s)	75, 446, 472, 613
Bme18I	GGWCC	1 cut(s)	819
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	2 cut(s)	495, 819
BmiI	GGNNCC	3 cut(s)	126, 515, 821
BmrFI	CCNGG	4 cut(s)	75, 446, 472, 613
BmrI	ACTGGG	1 cut(s)	488
BmsI	GCATC	2 cut(s)	556, 769
BmuI	ACTGGG	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	844
BpmI	CTGGAG	3 cut(s)	189, 454, 809
Bpu14I	TTCGAA	1 cut(s)	373
BpuEI	CTTGAG	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	613
Bsa29I	ATCGAT	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	385
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 162, 192
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 391
Bse1I	ACTGG	4 cut(s)	109, 483, 802, 821
Bse3DI	GCAATG	1 cut(s)	731
BseBI	CCWGG	3 cut(s)	75, 446, 472
BseCI	ATCGAT	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	385
BseGI	GGATG	1 cut(s)	746
BseLI	CCNNNNNNNGG	2 cut(s)	17, 391
BseMI	GCAATG	1 cut(s)	731
BseNI	ACTGG	4 cut(s)	109, 483, 802, 821
BseRI	GAGGAG	3 cut(s)	33, 36, 356
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	5 cut(s)	121, 229, 257, 536, 685
Bsh1236I	CGCG	1 cut(s)	696
BshFI	GGCC	3 cut(s)	395, 497, 578
BshVI	ATCGAT	1 cut(s)	558
BsiSI	CCGG	1 cut(s)	613
BslI	CCNNNNNNNGG	2 cut(s)	17, 391
BsmAI	GTCTC	2 cut(s)	165, 458
BsnI	GGCC	3 cut(s)	395, 497, 578
Bso31I	GGTCTC	1 cut(s)	458
Bsp119I	TTCGAA	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	8 cut(s)	124, 159, 265, 559, 600, 668, 830, 874
BspACI	CCGC	2 cut(s)	701, 866
BspANI	GGCC	3 cut(s)	395, 497, 578
BspDI	ATCGAT	1 cut(s)	558
BspFNI	CGCG	1 cut(s)	696
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	3 cut(s)	126, 515, 821
BspPI	GGATC	6 cut(s)	119, 132, 273, 554, 676, 882
BspT104I	TTCGAA	1 cut(s)	373
BspTNI	GGTCTC	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	731
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	4 cut(s)	109, 483, 802, 821
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	8 cut(s)	124, 159, 265, 559, 600, 668, 830, 874
BssT1I	CCWWGG	1 cut(s)	385
Bst2UI	CCWGG	3 cut(s)	75, 446, 472
Bst4CI	ACNGT	2 cut(s)	630, 708
Bst6I	CTCTTC	1 cut(s)	849
BstAUI	TGTACA	1 cut(s)	318
BstBI	TTCGAA	1 cut(s)	373
BstC8I	GCNNGC	5 cut(s)	282, 424, 609, 731, 886
BstDEI	CTNAG	1 cut(s)	487
BstEII	GGTNACC	1 cut(s)	448
BstF5I	GGATG	1 cut(s)	746
BstFNI	CGCG	1 cut(s)	696
BstHHI	GCGC	1 cut(s)	698
BstKTI	GATC	8 cut(s)	127, 162, 268, 562, 603, 671, 833, 877
BstMAI	GTCTC	2 cut(s)	165, 458
BstMBI	GATC	8 cut(s)	124, 159, 265, 559, 600, 668, 830, 874
BstMWI	GCNNNNNNNGC	9 cut(s)	164, 236, 245, 352, 361, 575, 617, 658, 730
BstNI	CCWGG	3 cut(s)	75, 446, 472
BstNSI	RCATGY	1 cut(s)	505
BstPI	GGTNACC	1 cut(s)	448
BstSCI	CCNGG	4 cut(s)	73, 444, 470, 611
BstSFI	CTRYAG	1 cut(s)	735
BstSLI	GKGCMC	1 cut(s)	190
BstUI	CGCG	1 cut(s)	696
BstV1I	GCAGC	5 cut(s)	121, 229, 257, 536, 685
BstV2I	GAAGAC	1 cut(s)	844
BstX2I	RGATCY	1 cut(s)	124
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	124
Bsu15I	ATCGAT	1 cut(s)	558
BsuI	GTATCC	1 cut(s)	468
BsuRI	GGCC	3 cut(s)	395, 497, 578
BsuTUI	ATCGAT	1 cut(s)	558
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	746
BtsIMutI	CAGTG	1 cut(s)	814
Cac8I	GCNNGC	5 cut(s)	282, 424, 609, 731, 886
CaiI	CAGNNNCTG	1 cut(s)	134
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	1 cut(s)	698
Cfr13I	GGNCC	2 cut(s)	495, 819
ClaI	ATCGAT	1 cut(s)	558
Csp6I	GTAC	2 cut(s)	305, 319
CspCI	CAANNNNNGTGG	2 cut(s)	310, 345
CviAII	CATG	6 cut(s)	53, 199, 211, 431, 502, 518
CviQI	GTAC	2 cut(s)	305, 319
DdeI	CTNAG	1 cut(s)	487
DpnI	GATC	8 cut(s)	126, 161, 267, 561, 602, 670, 832, 876
DpnII	GATC	8 cut(s)	124, 159, 265, 559, 600, 668, 830, 874
DraI	TTTAAA	1 cut(s)	768
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Eco130I	CCWWGG	1 cut(s)	385
Eco147I	AGGCCT	2 cut(s)	395, 578
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	819
Eco91I	GGTNACC	1 cut(s)	448
EcoO65I	GGTNACC	1 cut(s)	448
EcoRII	CCWGG	3 cut(s)	73, 444, 470
EcoT14I	CCWWGG	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	6 cut(s)	56, 202, 214, 434, 505, 521
FatI	CATG	6 cut(s)	52, 198, 210, 430, 501, 517
FbaI	TGATCA	1 cut(s)	600
Fnu4HI	GCNGC	5 cut(s)	135, 218, 271, 525, 699
FokI	GGATG	1 cut(s)	733
Fsp4HI	GCNGC	5 cut(s)	135, 218, 271, 525, 699
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	1 cut(s)	697
GluI	GCNGC	5 cut(s)	135, 218, 271, 525, 699
GsuI	CTGGAG	3 cut(s)	189, 454, 809
HaeIII	GGCC	3 cut(s)	395, 497, 578
HapII	CCGG	1 cut(s)	613
HhaI	GCGC	1 cut(s)	698
Hin1II	CATG	6 cut(s)	56, 202, 214, 434, 505, 521
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HindIII	AAGCTT	3 cut(s)	368, 407, 659
HinfI	GANTC	2 cut(s)	7, 290
HpaII	CCGG	1 cut(s)	613
HphI	GGTGA	2 cut(s)	442, 820
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	8 cut(s)	35, 128, 211, 563, 638, 666, 788, 834
HpyAV	CCTTC	4 cut(s)	115, 148, 406, 429
HpyCH4III	ACNGT	2 cut(s)	630, 708
HpyCH4IV	ACGT	2 cut(s)	105, 303
HpyCH4V	TGCA	5 cut(s)	137, 505, 620, 652, 712
HpyF10VI	GCNNNNNNNGC	9 cut(s)	164, 236, 245, 352, 361, 575, 617, 658, 730
HpyF3I	CTNAG	1 cut(s)	487
HpySE526I	ACGT	2 cut(s)	105, 303
Hsp92II	CATG	6 cut(s)	56, 202, 214, 434, 505, 521
HspAI	GCGC	1 cut(s)	696
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	8 cut(s)	124, 159, 265, 559, 600, 668, 830, 874
LmnI	GCTCC	3 cut(s)	278, 343, 715
Lsp1109I	GCAGC	5 cut(s)	121, 229, 257, 536, 685
LweI	GCATC	2 cut(s)	556, 769
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	2 cut(s)	105, 303
MaeIII	GTNAC	2 cut(s)	448, 581
MalI	GATC	8 cut(s)	126, 161, 267, 561, 602, 670, 832, 876
MboI	GATC	8 cut(s)	124, 159, 265, 559, 600, 668, 830, 874
MboII	GAAGA	5 cut(s)	16, 50, 788, 849, 866
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	4 cut(s)	65, 240, 309, 754
MlyI	GAGTC	1 cut(s)	16
MseI	TTAA	2 cut(s)	767, 827
MspI	CCGG	1 cut(s)	613
MspR9I	CCNGG	4 cut(s)	75, 446, 472, 613
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	3 cut(s)	75, 446, 472
MvnI	CGCG	1 cut(s)	696
MwoI	GCNNNNNNNGC	9 cut(s)	164, 236, 245, 352, 361, 575, 617, 658, 730
NciI	CCSGG	1 cut(s)	613
NdeII	GATC	8 cut(s)	124, 159, 265, 559, 600, 668, 830, 874
NlaIII	CATG	6 cut(s)	56, 202, 214, 434, 505, 521
NlaIV	GGNNCC	3 cut(s)	126, 515, 821
NmuCI	GTSAC	1 cut(s)	448
NspI	RCATGY	1 cut(s)	505
NspV	TTCGAA	1 cut(s)	373
PagI	TCATGA	1 cut(s)	210
PceI	AGGCCT	2 cut(s)	395, 578
PfeI	GAWTC	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	470
PkrI	GCNGC	5 cut(s)	136, 219, 272, 526, 700
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
Psp6I	CCWGG	3 cut(s)	73, 444, 470
PspEI	GGTNACC	1 cut(s)	448
PspGI	CCWGG	3 cut(s)	73, 444, 470
PspN4I	GGNNCC	3 cut(s)	126, 515, 821
PspPI	GGNCC	2 cut(s)	495, 819
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	2 cut(s)	306, 320
RsaNI	GTAC	2 cut(s)	305, 319
SaqAI	TTAA	2 cut(s)	767, 827
SatI	GCNGC	5 cut(s)	135, 218, 271, 525, 699
Sau3AI	GATC	8 cut(s)	124, 159, 265, 559, 600, 668, 830, 874
Sau96I	GGNCC	2 cut(s)	495, 819
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	4 cut(s)	75, 446, 472, 613
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	2 cut(s)	556, 769
SfcI	CTRYAG	1 cut(s)	735
SfuI	TTCGAA	1 cut(s)	373
SinI	GGWCC	1 cut(s)	819
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
Sse9I	AATT	4 cut(s)	65, 240, 309, 754
SseBI	AGGCCT	2 cut(s)	395, 578
SsiI	CCGC	2 cut(s)	701, 866
SspMI	CTAG	1 cut(s)	296
StuI	AGGCCT	2 cut(s)	395, 578
StyD4I	CCNGG	4 cut(s)	73, 444, 470, 611
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	2 cut(s)	630, 708
TaiI	ACGT	2 cut(s)	108, 306
TaqI	TCGA	4 cut(s)	94, 373, 558, 686
TasI	AATT	4 cut(s)	65, 240, 309, 754
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	767, 827
Tru9I	TTAA	2 cut(s)	767, 827
TscAI	CASTG	1 cut(s)	821
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	5 cut(s)	134, 217, 270, 524, 698
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	4 cut(s)	17, 227, 249, 657
TspRI	CASTG	1 cut(s)	821
VpaK11BI	GGWCC	1 cut(s)	819
XceI	RCATGY	1 cut(s)	505
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.