Rorug03G0345200

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011792
Physical Location & Seq
Reverse (-)
41702593 .. 41707216
4624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0345200.1

Sequence Viewer

Length: 2103 bp
ATGTCGACAATGAGAATGAAACATCTCTCCTCCGTTGCCAAGGATGTTGTACAATTCTGCGCTGTGAAACTGAACACATCGGTGGATAAGTTAACGGAGGAATTTGAAGCGACCAGCTCATGGAACAACAAAACGGCGTCGTCGCCCGGTGGTGGTGGTGCTGCTGCTGTTGGCACTTACGCGAGGAAATTTATAGAATTTTGCAGTGCAAAGGGTGTGAATGAGTTATGCCAAAACAATATTGAGGAAAAGATTGCCGATGGAATCTTTAGTCGTTTCACATTCGACATGATGCTCGCCTGGGAGATTCCCTACTCTGCCCAAGAGGACTCTTTCACCGAGTGTGTGGCAAAGGAGAAAGAAGACAAAAATGTAGTTGCAAAGTTTCCTCCAGAACAAGATGATGTTTCTTTGTTCTATACAGACCTCATGCCACTTCTAGTTGATAATGAGCGGAACGTTGGAGAAGATGCATTTGTGTGGTTGGGATCACTTGTTCCATTAGTCACAGATGTTGTTAATGGAAGATTTACCTTTGAAACTTTAACAGCACCTACAGGATACCGGCTCCATTTTCCTGCATATGACAAATACCTCAAGGAAATCGACAAATGTATAAAACATCTGCAAAAACAAGCAAAGCCAAAGGGTGTGGAGCTTGCAGATGATGAATTCATTTTACATGTGGAGGGAACTGCTAGCTCACAAAGAGTGGTACGCCACATCGGAGGAACAAGTTGGCCTGGTAAGCTCACCCTGACCAATTACGCACTCTATTTTGAGGCCTCTGGTGTGATAACATATGAAGATGCTCTTAAAATAGACCTTTCAAAGGATAAGGAGCAGAGTGTCAAACCAGCCTCTACAGGACCATGGGGTGCCCCACTTTTTGACAAGGCTATTGTTATCGAGTCTCCGGAGTTATCAGAGGGGATTGTGCTCGAGTTCCCCGAGGTAACAAGCTCCACAAGGCGTGACCATTGGCTTGCACTAACAAAGGAGATCATGTTGATGCACCAGTTTCTATCAAAATTCAAATTAGAATGTCCAATACAAGCATGGGAGATGCATGCAAGGACAATACTATCAATAATAAGGCTCCATGCAGCAAGGGAAATGCTACGAATATCTCCCCCTCAACCGACACGATTCTTAATCTTTTCCTTGTTTGAGGAGTTACCCAAGGGGGATTACATTCTAGAAGAGCTTGCTGAGAGTCTAAAGAAGGTCAATAGTGGACATCCATGTAGTGCAAGTTCAATCCTAAGGTGTATGATCATTTCTGAGTCAATTCACTCAAGTGTAGAGGTAACAGAAGTGGGTAAGGAAATTGCAGGTCCAAGTGGTCCAGTTGAAGACACATCCTTATTAGAAAGTGTAATTAATCAAGCAAGAGAGGAAGAGAAGGAAATTGCTATTGCCAAAGCGACCACAGAGGGACTGAAAGAAGAAGGCATCACTGAAAGCACTACTATTTTTATGGAGCTACTAAAGCCCCTTAGAAATGAGTGGTCTTGGTTTGAAGAAGTCCTCACATGGGAAAGGCCAGCAACCACACTGATTGTGATTGGTGCGGCTCTAATTGTCACCTACAAGGAGTGGGTGGGCAAAGCCATAGCAGCTTTCTTGGTTTGGGTGGTTGCGAAGATGATTAGAGCAAGACGGGAAAGAATTGATGAAAAGTGCAATGAGCTAGTTGTGTACACTGCATCTGAACAGACTACAGTTGAAAACATAGTGTCAGCTCAACACGGGGTGCAAACTGTGCACGAGATAGTGAAGAAAGCAAATGTATCGGTGTTGAAACTGTGGTCGATATTCATTTCAAAGGCCCACAAGCATGCAAATACAGCAATGCTGGTGCTAAGTGCAGCCTCAATATTTTTAGCGGTGGTTCCGATGAAGGTGTTTATAATGGGAGCCTTGTTGTATTACTTCACAATGACATTAGTATCAAAGTTAGGTAAGAGTGAGGGAAACAACCAAGGATTTACTAGACGACTGAAAGAATGGTGGGATTCAATTCCAGTTATTCCTGTGCATGTTGTTGATGAGGTTCCCAACAGTCCAAATCGAATGAAATGCGTACAGGCGGAAGGCTAG

Protein Analysis

700

Amino Acids

78.33

Weight (kDa)

5.57

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF639 PF04842 456 - 685 1.6e-62 Plant protein of unknown function (DUF639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011792)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04770
fragaria_vesca FvH4_4g05910 FvH4_4g05910
malus_domestica MD13G1231400.v1.1
prunus_persica Prupe.1G061500_v2.0.a1
pyrus_communis pycom13g20430
rosa_chinensis RchiOBHm_Chr4g0397051
rosa_laevigata RLG00000009453
rosa_multiflora Rmu_sc0007785.1_g000009
rosa_roxburghii Rroxscaffold_5G00342050
rosa_rugosa Rorug03G0345200 Rorug03G0345300 Rorug03G0345400
rosa_samantha Rh4AG076800 Rh4BG072700 Rh4CG081700 Rh4DG070200
rosa_wichuraiana Rw0G020190 Rw4G006180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1913
Acc36I ACCTGC 1 cut(s) 1325
AccB1I GGYRCC 1 cut(s) 878
AccB7I CCANNNNNTGG 1 cut(s) 120
AccBSI CCGCTC 1 cut(s) 454
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 182
AccIII TCCGGA 1 cut(s) 916
AciI CCGC 4 cut(s) 454, 1574, 1889, 2093
AclI AACGTT 1 cut(s) 459
AclWI GGATC 1 cut(s) 496
AcsI RAATTY 5 cut(s) 101, 188, 197, 671, 1031
AcyI GRCGYC 1 cut(s) 137
AdeI CACNNNGTG 2 cut(s) 342, 1756
AfaI GTAC 4 cut(s) 51, 717, 1703, 2088
AfiI CCNNNNNNNGG 4 cut(s) 120, 152, 832, 1537
AflIII ACRYGT 1 cut(s) 682
AjnI CCWGG 2 cut(s) 299, 742
AleI CACNNNNGTG 2 cut(s) 80, 1299
AloI GAACNNNNNNTCC 2 cut(s) 480, 512
Alw21I GWGCWC 2 cut(s) 942, 1770
Alw26I GTCTC 1 cut(s) 918
Alw44I GTGCAC 1 cut(s) 1766
AlwI GGATC 1 cut(s) 496
Ama87I CYCGRG 2 cut(s) 941, 950
Aor13HI TCCGGA 1 cut(s) 916
AoxI GGCC 4 cut(s) 740, 783, 1544, 1830
ApaLI GTGCAC 1 cut(s) 1766
ApeKI GCWGC 5 cut(s) 161, 164, 1106, 1619, 1871
ApoI RAATTY 5 cut(s) 101, 188, 197, 671, 1031
AseI ATTAAT 1 cut(s) 1383
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 4 cut(s) 869, 1337, 1346, 1831
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 3 cut(s) 328, 745, 1579
AsuNHI GCTAGC 1 cut(s) 698
AvaI CYCGRG 2 cut(s) 941, 950
AvaII GGWCC 3 cut(s) 869, 1337, 1346
AxyI CCTNAGG 1 cut(s) 1265
BaeGI GKGCMC 2 cut(s) 883, 1770
BaeI ACNNNNGTAYC 2 cut(s) 1935, 1968
BanI GGYRCC 1 cut(s) 878
BauI CACGAG 1 cut(s) 1769
BbsI GAAGAC 2 cut(s) 369, 1362
Bbv12I GWGCWC 2 cut(s) 942, 1770
BbvI GCAGC 5 cut(s) 148, 151, 1118, 1631, 1883
BccI CCATC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 150
BcgI CGANNNNNNTGC 4 cut(s) 1776, 1810, 2064, 2098
BciT130I CCWGG 2 cut(s) 301, 744
BciVI GTATCC 1 cut(s) 554
BclI TGATCA 1 cut(s) 1275
BcnI CCSGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 918
BfaI CTAG 6 cut(s) 440, 699, 1199, 1694, 1995, 2101
BfmI CTRYAG 3 cut(s) 555, 864, 1722
BfuAI ACCTGC 1 cut(s) 1325
BfuI GTATCC 1 cut(s) 554
BisI GCNGC 6 cut(s) 162, 165, 1107, 1575, 1620, 1872
BlsI GCNGC 6 cut(s) 163, 166, 1108, 1576, 1621, 1873
Bme1390I CCNGG 3 cut(s) 147, 301, 744
Bme18I GGWCC 3 cut(s) 869, 1337, 1346
BmeT110I CYCGRG 2 cut(s) 941, 950
BmgT120I GGNCC 4 cut(s) 869, 1337, 1346, 1831
BmiI GGNNCC 6 cut(s) 569, 880, 1100, 1896, 1921, 2058
BmrFI CCNGG 3 cut(s) 147, 301, 744
BmsI GCATC 7 cut(s) 282, 460, 799, 1002, 1056, 1464, 1718
BmtI GCTAGC 1 cut(s) 702
BpiI GAAGAC 2 cut(s) 369, 1362
BpmI CTGGAG 1 cut(s) 375
BpuEI CTTGAG 2 cut(s) 581, 1282
BpuMI CCSGG 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 137
BsaJI CCNNGG 6 cut(s) 39, 300, 872, 951, 1182, 1984
BsaWI WCCGGW 1 cut(s) 916
BsaXI ACNNNNNCTCC 2 cut(s) 992, 1022
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 152, 832, 1537
Bse118I RCCGGY 1 cut(s) 564
Bse1I ACTGG 3 cut(s) 1018, 1349, 2027
Bse21I CCTNAGG 1 cut(s) 1265
Bse3DI GCAATG 2 cut(s) 1693, 1860
BseAI TCCGGA 1 cut(s) 916
BseBI CCWGG 2 cut(s) 301, 744
BseDI CCNNGG 6 cut(s) 39, 300, 872, 951, 1182, 1984
BseGI GGATG 3 cut(s) 49, 1240, 1361
BseLI CCNNNNNNNGG 4 cut(s) 120, 152, 832, 1537
BseMI GCAATG 2 cut(s) 1693, 1860
BseMII CTCAG 2 cut(s) 1203, 1275
BseNI ACTGG 3 cut(s) 1018, 1349, 2027
BseRI GAGGAG 2 cut(s) 19, 1187
BseSI GKGCMC 2 cut(s) 883, 1770
BseXI GCAGC 5 cut(s) 148, 151, 1118, 1631, 1883
BsgI GTGCAG 1 cut(s) 1890
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 4 cut(s) 742, 785, 1546, 1832
BshNI GGYRCC 1 cut(s) 878
BsiHKAI GWGCWC 2 cut(s) 942, 1770
BsiHKCI CYCGRG 2 cut(s) 941, 950
BsiSI CCGG 3 cut(s) 147, 565, 917
BslFI GGGAC 1 cut(s) 1452
BslI CCNNNNNNNGG 4 cut(s) 120, 152, 832, 1537
BsmAI GTCTC 1 cut(s) 918
BsmFI GGGAC 1 cut(s) 1452
BsnI GGCC 4 cut(s) 742, 785, 1546, 1832
BsoBI CYCGRG 2 cut(s) 941, 950
Bsp1286I GDGCHC 3 cut(s) 883, 942, 1770
Bsp13I TCCGGA 1 cut(s) 916
Bsp1407I TGTACA 2 cut(s) 49, 1701
Bsp143I GATC 3 cut(s) 488, 1002, 1275
Bsp19I CCATGG 1 cut(s) 872
BspACI CCGC 4 cut(s) 454, 1574, 1889, 2093
BspANI GGCC 4 cut(s) 742, 785, 1546, 1832
BspCNI CTCAG 2 cut(s) 1204, 1276
BspEI TCCGGA 1 cut(s) 916
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 6 cut(s) 569, 880, 1100, 1896, 1921, 2058
BspMI ACCTGC 1 cut(s) 1325
BspOI GCTAGC 1 cut(s) 702
BspPI GGATC 1 cut(s) 496
BspQI GCTCTTC 1 cut(s) 1197
BspT107I GGYRCC 1 cut(s) 878
BsrBI CCGCTC 1 cut(s) 454
BsrDI GCAATG 2 cut(s) 1693, 1860
BsrFI RCCGGY 1 cut(s) 564
BsrGI TGTACA 2 cut(s) 49, 1701
BsrI ACTGG 3 cut(s) 1018, 1349, 2027
BssAI RCCGGY 1 cut(s) 564
BssECI CCNNGG 6 cut(s) 39, 300, 872, 951, 1182, 1984
BssMI GATC 3 cut(s) 488, 1002, 1275
BssNI GRCGYC 1 cut(s) 137
BssSI CACGAG 1 cut(s) 1769
BssT1I CCWWGG 4 cut(s) 39, 872, 1182, 1984
Bst2BI CACGAG 1 cut(s) 1769
Bst2UI CCWGG 2 cut(s) 301, 744
Bst4CI ACNGT 4 cut(s) 1726, 1765, 1809, 2066
Bst6I CTCTTC 2 cut(s) 1197, 1395
BstACI GRCGYC 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 1765
BstAUI TGTACA 2 cut(s) 49, 1701
BstC8I GCNNGC 8 cut(s) 297, 660, 700, 987, 1071, 1209, 1548, 1842
BstDEI CTNAG 5 cut(s) 1212, 1265, 1284, 1499, 1865
BstDSI CCRYGG 1 cut(s) 872
BstENI CCTNNNNNAGG 1 cut(s) 830
BstF5I GGATG 3 cut(s) 49, 1240, 1361
BstFNI CGCG 1 cut(s) 182
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 3 cut(s) 491, 1005, 1278
BstMAI GTCTC 1 cut(s) 918
BstMBI GATC 3 cut(s) 488, 1002, 1275
BstMWI GCNNNNNNNGC 5 cut(s) 748, 1492, 1619, 1765, 1850
BstNI CCWGG 2 cut(s) 301, 744
BstNSI RCATGY 4 cut(s) 686, 1073, 1844, 2045
BstSCI CCNGG 3 cut(s) 145, 299, 742
BstSFI CTRYAG 3 cut(s) 555, 864, 1722
BstSLI GKGCMC 2 cut(s) 883, 1770
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 5 cut(s) 148, 151, 1118, 1631, 1883
BstV2I GAAGAC 2 cut(s) 369, 1362
Bsu36I CCTNAGG 1 cut(s) 1265
BsuI GTATCC 1 cut(s) 554
BsuRI GGCC 4 cut(s) 742, 785, 1546, 1832
BtgI CCRYGG 1 cut(s) 872
BtsCI GGATG 3 cut(s) 49, 1240, 1361
BtsI GCAGTG 2 cut(s) 211, 1704
BtsIMutI CAGTG 4 cut(s) 211, 1458, 1556, 1704
BveI ACCTGC 1 cut(s) 1325
Cac8I GCNNGC 8 cut(s) 297, 660, 700, 987, 1071, 1209, 1548, 1842
CfoI GCGC 1 cut(s) 62
Cfr10I RCCGGY 1 cut(s) 564
Cfr13I GGNCC 4 cut(s) 869, 1337, 1346, 1831
CseI GACGC 1 cut(s) 126
Csp6I GTAC 4 cut(s) 50, 716, 1702, 2087
CspCI CAANNNNNGTGG 4 cut(s) 633, 668, 1543, 1578
CviQI GTAC 4 cut(s) 50, 716, 1702, 2087
DdeI CTNAG 5 cut(s) 1212, 1265, 1284, 1499, 1865
DpnI GATC 3 cut(s) 490, 1004, 1277
DpnII GATC 3 cut(s) 488, 1002, 1275
DraIII CACNNNGTG 2 cut(s) 342, 1756
Eam1104I CTCTTC 2 cut(s) 1197, 1395
EarI CTCTTC 2 cut(s) 1197, 1395
Eco130I CCWWGG 4 cut(s) 39, 872, 1182, 1984
Eco147I AGGCCT 1 cut(s) 785
Eco47I GGWCC 3 cut(s) 869, 1337, 1346
Eco81I CCTNAGG 1 cut(s) 1265
Eco88I CYCGRG 2 cut(s) 941, 950
EcoNI CCTNNNNNAGG 1 cut(s) 830
EcoRI GAATTC 1 cut(s) 671
EcoRII CCWGG 2 cut(s) 299, 742
EcoT14I CCWWGG 4 cut(s) 39, 872, 1182, 1984
EcoT22I ATGCAT 2 cut(s) 475, 1071
ErhI CCWWGG 4 cut(s) 39, 872, 1182, 1984
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FaqI GGGAC 1 cut(s) 1452
FauNDI CATATG 2 cut(s) 583, 802
FbaI TGATCA 1 cut(s) 1275
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 6 cut(s) 162, 165, 1107, 1575, 1620, 1872
FokI GGATG 3 cut(s) 56, 1227, 1348
Fsp4HI GCNGC 6 cut(s) 162, 165, 1107, 1575, 1620, 1872
FspBI CTAG 6 cut(s) 440, 699, 1199, 1694, 1995, 2101
GlaI GCGC 1 cut(s) 61
GluI GCNGC 6 cut(s) 162, 165, 1107, 1575, 1620, 1872
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 4 cut(s) 742, 785, 1546, 1832
HapII CCGG 3 cut(s) 147, 565, 917
HgaI GACGC 1 cut(s) 126
HhaI GCGC 1 cut(s) 62
Hin1I GRCGYC 1 cut(s) 137
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HincII GTYRAC 2 cut(s) 6, 93
HindII GTYRAC 2 cut(s) 6, 93
HinfI GANTC 8 cut(s) 264, 307, 329, 911, 1149, 1216, 1286, 2018
HpaI GTTAAC 1 cut(s) 93
HpaII CCGG 3 cut(s) 147, 565, 917
HphI GGTGA 3 cut(s) 328, 745, 1579
Hpy166II GTNNAC 6 cut(s) 6, 93, 1238, 1702, 1704, 1768
Hpy188I TCNGA 5 cut(s) 728, 928, 1285, 1714, 1899
Hpy188III TCNNGA 3 cut(s) 392, 917, 1199
Hpy8I GTNNAC 6 cut(s) 6, 93, 1238, 1702, 1704, 1768
Hpy99I CGWCG 2 cut(s) 142, 145
HpyAV CCTTC 5 cut(s) 1219, 1399, 1445, 1897, 2090
HpyCH4III ACNGT 4 cut(s) 1726, 1765, 1809, 2066
HpyCH4IV ACGT 1 cut(s) 459
HpyF10VI GCNNNNNNNGC 5 cut(s) 748, 1492, 1619, 1765, 1850
HpyF3I CTNAG 5 cut(s) 1212, 1265, 1284, 1499, 1865
HpySE526I ACGT 1 cut(s) 459
Hsp92I GRCGYC 1 cut(s) 137
HspAI GCGC 1 cut(s) 60
Kpn2I TCCGGA 1 cut(s) 916
Ksp22I TGATCA 1 cut(s) 1275
KspAI GTTAAC 1 cut(s) 93
Kzo9I GATC 3 cut(s) 488, 1002, 1275
LguI GCTCTTC 1 cut(s) 1197
LmnI GCTCC 7 cut(s) 573, 655, 841, 968, 1104, 1483, 1919
Lsp1109I GCAGC 5 cut(s) 148, 151, 1118, 1631, 1883
LweI GCATC 7 cut(s) 282, 460, 799, 1002, 1056, 1464, 1718
MaeI CTAG 6 cut(s) 440, 699, 1199, 1694, 1995, 2101
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 6 cut(s) 505, 955, 974, 1176, 1309, 1585
MalI GATC 3 cut(s) 490, 1004, 1277
MbiI CCGCTC 1 cut(s) 454
MboI GATC 3 cut(s) 488, 1002, 1275
MhlI GDGCHC 3 cut(s) 883, 942, 1770
MlyI GAGTC 4 cut(s) 323, 920, 1225, 1295
MmeI TCCRAC 1 cut(s) 442
Mph1103I ATGCAT 2 cut(s) 475, 1071
MroI TCCGGA 1 cut(s) 916
MseI TTAA 6 cut(s) 92, 519, 545, 816, 1154, 1383
MslI CAYNNNNRTG 5 cut(s) 80, 478, 1010, 1299, 1839
MspI CCGG 3 cut(s) 147, 565, 917
MspR9I CCNGG 3 cut(s) 147, 301, 744
MvaI CCWGG 2 cut(s) 301, 744
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 5 cut(s) 748, 1492, 1619, 1765, 1850
NciI CCSGG 1 cut(s) 147
NcoI CCATGG 1 cut(s) 872
NdeI CATATG 2 cut(s) 583, 802
NdeII GATC 3 cut(s) 488, 1002, 1275
NheI GCTAGC 1 cut(s) 698
NlaIV GGNNCC 6 cut(s) 569, 880, 1100, 1896, 1921, 2058
NmuCI GTSAC 3 cut(s) 505, 974, 1585
NsiI ATGCAT 2 cut(s) 475, 1071
NspI RCATGY 4 cut(s) 686, 1073, 1844, 2045
OliI CACNNNNGTG 2 cut(s) 80, 1299
PaeI GCATGC 2 cut(s) 1073, 1844
PaeR7I CTCGAG 1 cut(s) 941
PceI AGGCCT 1 cut(s) 785
PciI ACATGT 1 cut(s) 682
PciSI GCTCTTC 1 cut(s) 1197
PcsI WCGNNNNNNNCGW 1 cut(s) 948
PfeI GAWTC 4 cut(s) 264, 307, 1149, 2018
PflMI CCANNNNNTGG 1 cut(s) 120
PkrI GCNGC 6 cut(s) 163, 166, 1108, 1576, 1621, 1873
PleI GAGTC 4 cut(s) 323, 919, 1224, 1294
PpsI GAGTC 4 cut(s) 323, 919, 1224, 1294
PscI ACATGT 1 cut(s) 682
PshBI ATTAAT 1 cut(s) 1383
PsiI TTATAA 1 cut(s) 1913
Psp1406I AACGTT 1 cut(s) 459
Psp6I CCWGG 2 cut(s) 299, 742
PspGI CCWGG 2 cut(s) 299, 742
PspN4I GGNNCC 6 cut(s) 569, 880, 1100, 1896, 1921, 2058
PspPI GGNCC 4 cut(s) 869, 1337, 1346, 1831
PspXI VCTCGAGB 1 cut(s) 941
PsrI GAACNNNNNNTAC 2 cut(s) 1240, 1272
RsaI GTAC 4 cut(s) 51, 717, 1703, 2088
RsaNI GTAC 4 cut(s) 50, 716, 1702, 2087
RseI CAYNNNNRTG 5 cut(s) 80, 478, 1010, 1299, 1839
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 1197
SaqAI TTAA 6 cut(s) 92, 519, 545, 816, 1154, 1383
SatI GCNGC 6 cut(s) 162, 165, 1107, 1575, 1620, 1872
Sau3AI GATC 3 cut(s) 488, 1002, 1275
Sau96I GGNCC 4 cut(s) 869, 1337, 1346, 1831
SchI GAGTC 4 cut(s) 323, 920, 1225, 1295
ScrFI CCNGG 3 cut(s) 147, 301, 744
SduI GDGCHC 3 cut(s) 883, 942, 1770
SfaNI GCATC 7 cut(s) 282, 460, 799, 1002, 1056, 1464, 1718
SfcI CTRYAG 3 cut(s) 555, 864, 1722
Sfr274I CTCGAG 1 cut(s) 941
SinI GGWCC 3 cut(s) 869, 1337, 1346
SlaI CTCGAG 1 cut(s) 941
SmiMI CAYNNNNRTG 5 cut(s) 80, 478, 1010, 1299, 1839
SmlI CTYRAG 3 cut(s) 596, 941, 1297
SmoI CTYRAG 3 cut(s) 596, 941, 1297
SphI GCATGC 2 cut(s) 1073, 1844
SseBI AGGCCT 1 cut(s) 785
SsiI CCGC 4 cut(s) 454, 1574, 1889, 2093
SspI AATATT 2 cut(s) 241, 1881
SspMI CTAG 6 cut(s) 440, 699, 1199, 1694, 1995, 2101
StuI AGGCCT 1 cut(s) 785
StyD4I CCNGG 3 cut(s) 145, 299, 742
StyI CCWWGG 4 cut(s) 39, 872, 1182, 1984
TaaI ACNGT 4 cut(s) 1726, 1765, 1809, 2066
TaiI ACGT 1 cut(s) 462
TaqI TCGA 7 cut(s) 5, 285, 606, 909, 942, 1814, 2074
TatI WGTACW 2 cut(s) 49, 1701
TauI GCSGC 1 cut(s) 1577
TfiI GAWTC 4 cut(s) 264, 307, 1149, 2018
Tru1I TTAA 6 cut(s) 92, 519, 545, 816, 1154, 1383
Tru9I TTAA 6 cut(s) 92, 519, 545, 816, 1154, 1383
TscAI CASTG 4 cut(s) 211, 1465, 1563, 1711
TseFI GTSAC 3 cut(s) 505, 974, 1585
TseI GCWGC 5 cut(s) 161, 164, 1106, 1619, 1871
Tsp45I GTSAC 3 cut(s) 505, 974, 1585
TspDTI ATGAA 8 cut(s) 32, 664, 684, 819, 1692, 1810, 1916, 2093
TspGWI ACGGA 2 cut(s) 22, 110
TspRI CASTG 4 cut(s) 211, 1465, 1563, 1711
Van91I CCANNNNNTGG 1 cut(s) 120
VneI GTGCAC 1 cut(s) 1766
VpaK11BI GGWCC 3 cut(s) 869, 1337, 1346
VspI ATTAAT 1 cut(s) 1383
XagI CCTNNNNNAGG 1 cut(s) 830
XapI RAATTY 5 cut(s) 101, 188, 197, 671, 1031
XbaI TCTAGA 1 cut(s) 1198
XceI RCATGY 4 cut(s) 686, 1073, 1844, 2045
XcmI CCANNNNNNNNNTGG 1 cut(s) 1056
XhoI CTCGAG 1 cut(s) 941
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 6 cut(s) 440, 699, 1199, 1694, 1995, 2101
Zsp2I ATGCAT 2 cut(s) 475, 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.