Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011792

Physical Location & Seq

Genomic Coordinates Reverse (-)

15568339 .. 15572224

Gene Structure 3886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG076800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCAGTTAGTTGAGAAGGATCCAGAAGCCGCAATAGGATTGTTTTGGAAGGCGATCAATGCTGGAGACAGGGTGGATAGTGCCCTAAAGGACATGGCAATAGTCATGAAGCAGCAAGACAGAGCAGATGAAGCAATTGAAGCAGTAATGTCATTCAGGGATCGCTGCTCCAAGCAGGCACAGGAATCCCTAGATAACGTACTAATTGACTTGTACAAGAAATGTGGGAGAATGGAGGAGCAAATAGAGCTATTGAAGCAGAAGCTTCGAATGATTTACCAAGGAGAGGCCTTCAATGGTAAGCTTACCAAGACAGCACGCTCTCATGGAAGGAAGTTCCAGGTCACCATCAAGCAAGAGACCTCCAGGATACTGGGGAACTTAGGTTGGGCCTACATGCAACAAGGGAACCATGTGGCAGCAGAAGTGGTATATCACAAAGCTCAAATCATCGATCCAGATGCCAACAAGGCCTGTAACTTATGCCTCTGCCTGATCAAGCAAGCCCGGTATGCAGAGGCACGGTCAGTTCTTGATGAAGTGTTGCAGGGTAAGCTTTCAGGATCAAGTGAGGACAAGTCGAAAAAACGCGCTGCGGAACTGTTGCAGGAGCTAAAGCAATGCCAGCCTGTAGTCTTGTCATCCAATAATTCGTTAGGTTTAAATATAGAAGATGCTTTTCTGGAGGGGCTTGACCACTTGGTGAAGCACTGGACCCCTTTAAGATCAAGAAGACTTCCCATCTTTGAAGAGATTTCTCCGCATAGGGATCAGTTAGCGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0006950 GO:0006996 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0009991 GO:0010438 GO:0010439 GO:0010675 GO:0016043 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0042762 GO:0043255 GO:0043455 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051716 GO:0062012 GO:0065007 GO:0071496 GO:0071840 GO:0080090 GO:1900376

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

261

Amino Acids

29.54

Weight (kDa)

8.1

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04770
fragaria_vesca	FvH4_4g05910 FvH4_4g05910
malus_domestica	MD13G1231400.v1.1
prunus_persica	Prupe.1G061500_v2.0.a1
pyrus_communis	pycom13g20430
rosa_chinensis	RchiOBHm_Chr4g0397051
rosa_laevigata	RLG00000009453
rosa_multiflora	Rmu_sc0007785.1_g000009
rosa_roxburghii	Rroxscaffold_5G00342050
rosa_rugosa	Rorug03G0345200 Rorug03G0345300 Rorug03G0345400
rosa_samantha	Rh4AG076800 Rh4BG072700 Rh4CG081700 Rh4DG070200
rosa_wichuraiana	Rw0G020190 Rw4G006180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	591
AciI	CCGC	3 cut(s)	30, 596, 761
AclWI	GGATC	6 cut(s)	14, 27, 168, 449, 571, 777
AdeI	CACNNNGTG	1 cut(s)	703
AfaI	GTAC	2 cut(s)	201, 215
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	4 cut(s)	140, 256, 295, 749
AjnI	CCWGG	2 cut(s)	339, 365
AluBI	AGCT	6 cut(s)	250, 265, 304, 443, 556, 613
AluI	AGCT	6 cut(s)	250, 265, 304, 443, 556, 613
Alw26I	GTCTC	2 cut(s)	60, 353
AlwI	GGATC	6 cut(s)	14, 27, 168, 449, 571, 777
AoxI	GGCC	3 cut(s)	288, 390, 471
ApeKI	GCWGC	4 cut(s)	112, 165, 419, 593
AspLEI	GCGC	1 cut(s)	593
AspS9I	GGNCC	2 cut(s)	390, 714
AsuC2I	CCSGG	1 cut(s)	508
AsuHPI	GGTGA	2 cut(s)	337, 715
AsuII	TTCGAA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	714
BaeGI	GKGCMC	1 cut(s)	85
BamHI	GGATCC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	739
BbvI	GCAGC	4 cut(s)	124, 152, 431, 580
BccI	CCATC	2 cut(s)	356, 749
BcgI	CGANNNNNNTGC	4 cut(s)	248, 282, 443, 477
BciT130I	CCWGG	2 cut(s)	341, 367
BciVI	GTATCC	1 cut(s)	363
BclI	TGATCA	1 cut(s)	495
BcnI	CCSGG	1 cut(s)	508
BcoDI	GTCTC	2 cut(s)	60, 353
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	630
BfuI	GTATCC	1 cut(s)	363
BglI	GCCNNNNNGGC	1 cut(s)	470
BisI	GCNGC	5 cut(s)	30, 113, 166, 420, 594
BlsI	GCNGC	5 cut(s)	31, 114, 167, 421, 595
Bme1390I	CCNGG	3 cut(s)	341, 367, 508
Bme18I	GGWCC	1 cut(s)	714
BmgT120I	GGNCC	2 cut(s)	390, 714
BmiI	GGNNCC	3 cut(s)	21, 410, 716
BmrFI	CCNGG	3 cut(s)	341, 367, 508
BmrI	ACTGGG	1 cut(s)	383
BmsI	GCATC	2 cut(s)	451, 664
BmuI	ACTGGG	1 cut(s)	383
BpiI	GAAGAC	1 cut(s)	739
BpmI	CTGGAG	3 cut(s)	84, 349, 704
Bpu14I	TTCGAA	1 cut(s)	268
BpuMI	CCSGG	1 cut(s)	508
Bsa29I	ATCGAT	1 cut(s)	453
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse1I	ACTGG	2 cut(s)	378, 716
Bse3DI	GCAATG	1 cut(s)	626
BseBI	CCWGG	2 cut(s)	341, 367
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	641
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMI	GCAATG	1 cut(s)	626
BseNI	ACTGG	2 cut(s)	378, 716
BseRI	GAGGAG	1 cut(s)	251
BseSI	GKGCMC	1 cut(s)	85
BseXI	GCAGC	4 cut(s)	124, 152, 431, 580
Bsh1236I	CGCG	1 cut(s)	591
BshFI	GGCC	3 cut(s)	290, 392, 473
BshVI	ATCGAT	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	508
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	2 cut(s)	60, 353
BsnI	GGCC	3 cut(s)	290, 392, 473
Bso31I	GGTCTC	1 cut(s)	353
Bsp119I	TTCGAA	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	8 cut(s)	19, 54, 160, 454, 495, 563, 725, 769
BspACI	CCGC	3 cut(s)	30, 596, 761
BspANI	GGCC	3 cut(s)	290, 392, 473
BspDI	ATCGAT	1 cut(s)	453
BspFNI	CGCG	1 cut(s)	591
BspHI	TCATGA	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	21, 410, 716
BspPI	GGATC	6 cut(s)	14, 27, 168, 449, 571, 777
BspT104I	TTCGAA	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	626
BsrGI	TGTACA	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	378, 716
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	8 cut(s)	19, 54, 160, 454, 495, 563, 725, 769
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	2 cut(s)	341, 367
Bst4CI	ACNGT	2 cut(s)	525, 603
Bst6I	CTCTTC	1 cut(s)	744
BstAUI	TGTACA	1 cut(s)	213
BstBI	TTCGAA	1 cut(s)	268
BstC8I	GCNNGC	5 cut(s)	177, 319, 504, 626, 781
BstDEI	CTNAG	1 cut(s)	382
BstEII	GGTNACC	1 cut(s)	343
BstF5I	GGATG	1 cut(s)	641
BstFNI	CGCG	1 cut(s)	591
BstHHI	GCGC	1 cut(s)	593
BstKTI	GATC	8 cut(s)	22, 57, 163, 457, 498, 566, 728, 772
BstMAI	GTCTC	2 cut(s)	60, 353
BstMBI	GATC	8 cut(s)	19, 54, 160, 454, 495, 563, 725, 769
BstMWI	GCNNNNNNNGC	9 cut(s)	59, 131, 140, 247, 256, 470, 512, 553, 625
BstNI	CCWGG	2 cut(s)	341, 367
BstNSI	RCATGY	1 cut(s)	400
BstPI	GGTNACC	1 cut(s)	343
BstSCI	CCNGG	3 cut(s)	339, 365, 506
BstSFI	CTRYAG	1 cut(s)	630
BstSLI	GKGCMC	1 cut(s)	85
BstUI	CGCG	1 cut(s)	591
BstV1I	GCAGC	4 cut(s)	124, 152, 431, 580
BstV2I	GAAGAC	1 cut(s)	739
BstX2I	RGATCY	1 cut(s)	19
BstXI	CCANNNNNNTGG	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	19
Bsu15I	ATCGAT	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	363
BsuRI	GGCC	3 cut(s)	290, 392, 473
BsuTUI	ATCGAT	1 cut(s)	453
BtsCI	GGATG	1 cut(s)	641
BtsIMutI	CAGTG	1 cut(s)	709
Cac8I	GCNNGC	5 cut(s)	177, 319, 504, 626, 781
CciI	TCATGA	1 cut(s)	105
CfoI	GCGC	1 cut(s)	593
Cfr13I	GGNCC	2 cut(s)	390, 714
ClaI	ATCGAT	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	200, 214
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	5 cut(s)	94, 106, 326, 397, 413
CviQI	GTAC	2 cut(s)	200, 214
DdeI	CTNAG	1 cut(s)	382
DpnI	GATC	8 cut(s)	21, 56, 162, 456, 497, 565, 727, 771
DpnII	GATC	8 cut(s)	19, 54, 160, 454, 495, 563, 725, 769
DraI	TTTAAA	1 cut(s)	663
DraIII	CACNNNGTG	1 cut(s)	703
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
Eco130I	CCWWGG	1 cut(s)	280
Eco147I	AGGCCT	2 cut(s)	290, 473
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	714
Eco91I	GGTNACC	1 cut(s)	343
EcoO65I	GGTNACC	1 cut(s)	343
EcoRII	CCWGG	2 cut(s)	339, 365
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	5 cut(s)	97, 109, 329, 400, 416
FatI	CATG	5 cut(s)	93, 105, 325, 396, 412
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	5 cut(s)	30, 113, 166, 420, 594
FokI	GGATG	1 cut(s)	628
Fsp4HI	GCNGC	5 cut(s)	30, 113, 166, 420, 594
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	1 cut(s)	592
GluI	GCNGC	5 cut(s)	30, 113, 166, 420, 594
GsuI	CTGGAG	3 cut(s)	84, 349, 704
HaeIII	GGCC	3 cut(s)	290, 392, 473
HapII	CCGG	1 cut(s)	508
HhaI	GCGC	1 cut(s)	593
Hin1II	CATG	5 cut(s)	97, 109, 329, 400, 416
Hin6I	GCGC	1 cut(s)	591
HinP1I	GCGC	1 cut(s)	591
HindIII	AAGCTT	3 cut(s)	263, 302, 554
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	1 cut(s)	508
HphI	GGTGA	2 cut(s)	337, 715
Hpy188III	TCNNGA	7 cut(s)	23, 106, 458, 533, 561, 683, 729
HpyAV	CCTTC	4 cut(s)	10, 43, 301, 324
HpyCH4III	ACNGT	2 cut(s)	525, 603
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	5 cut(s)	4, 400, 515, 547, 607
HpyF10VI	GCNNNNNNNGC	9 cut(s)	59, 131, 140, 247, 256, 470, 512, 553, 625
HpyF3I	CTNAG	1 cut(s)	382
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	5 cut(s)	97, 109, 329, 400, 416
HspAI	GCGC	1 cut(s)	591
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	8 cut(s)	19, 54, 160, 454, 495, 563, 725, 769
LmnI	GCTCC	3 cut(s)	173, 238, 610
Lsp1109I	GCAGC	4 cut(s)	124, 152, 431, 580
LweI	GCATC	2 cut(s)	451, 664
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	343, 476
MalI	GATC	8 cut(s)	21, 56, 162, 456, 497, 565, 727, 771
MboI	GATC	8 cut(s)	19, 54, 160, 454, 495, 563, 725, 769
MboII	GAAGA	3 cut(s)	683, 744, 761
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	3 cut(s)	135, 204, 649
MnlI	CCTC	7 cut(s)	229, 280, 373, 497, 511, 565, 679
MseI	TTAA	2 cut(s)	662, 722
MspI	CCGG	1 cut(s)	508
MspR9I	CCNGG	3 cut(s)	341, 367, 508
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	2 cut(s)	341, 367
MvnI	CGCG	1 cut(s)	591
MwoI	GCNNNNNNNGC	9 cut(s)	59, 131, 140, 247, 256, 470, 512, 553, 625
NciI	CCSGG	1 cut(s)	508
NdeII	GATC	8 cut(s)	19, 54, 160, 454, 495, 563, 725, 769
NlaIII	CATG	5 cut(s)	97, 109, 329, 400, 416
NlaIV	GGNNCC	3 cut(s)	21, 410, 716
NmuCI	GTSAC	1 cut(s)	343
NspI	RCATGY	1 cut(s)	400
NspV	TTCGAA	1 cut(s)	268
PagI	TCATGA	1 cut(s)	105
PceI	AGGCCT	2 cut(s)	290, 473
PfeI	GAWTC	1 cut(s)	185
PfoI	TCCNGGA	1 cut(s)	365
PkrI	GCNGC	5 cut(s)	31, 114, 167, 421, 595
Psp6I	CCWGG	2 cut(s)	339, 365
PspEI	GGTNACC	1 cut(s)	343
PspGI	CCWGG	2 cut(s)	339, 365
PspN4I	GGNNCC	3 cut(s)	21, 410, 716
PspPI	GGNCC	2 cut(s)	390, 714
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	2 cut(s)	201, 215
RsaNI	GTAC	2 cut(s)	200, 214
SaqAI	TTAA	2 cut(s)	662, 722
SatI	GCNGC	5 cut(s)	30, 113, 166, 420, 594
Sau3AI	GATC	8 cut(s)	19, 54, 160, 454, 495, 563, 725, 769
Sau96I	GGNCC	2 cut(s)	390, 714
ScrFI	CCNGG	3 cut(s)	341, 367, 508
SduI	GDGCHC	1 cut(s)	85
SfaNI	GCATC	2 cut(s)	451, 664
SfcI	CTRYAG	1 cut(s)	630
SfuI	TTCGAA	1 cut(s)	268
SinI	GGWCC	1 cut(s)	714
Sse9I	AATT	3 cut(s)	135, 204, 649
SseBI	AGGCCT	2 cut(s)	290, 473
SsiI	CCGC	3 cut(s)	30, 596, 761
SspMI	CTAG	1 cut(s)	191
StuI	AGGCCT	2 cut(s)	290, 473
StyD4I	CCNGG	3 cut(s)	339, 365, 506
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	2 cut(s)	525, 603
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	3 cut(s)	268, 453, 581
TasI	AATT	3 cut(s)	135, 204, 649
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	2 cut(s)	662, 722
Tru9I	TTAA	2 cut(s)	662, 722
TscAI	CASTG	1 cut(s)	716
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	4 cut(s)	112, 165, 419, 593
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	3 cut(s)	122, 144, 552
TspRI	CASTG	1 cut(s)	716
VpaK11BI	GGWCC	1 cut(s)	714
XceI	RCATGY	1 cut(s)	400
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.