Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009937

Physical Location & Seq

Genomic Coordinates Forward (+)

1425539 .. 1428869

Gene Structure 3331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G05000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAAGCTTGTGGAGAAGACGACTACTACAGAGCAGGACAATGGAGAAGATTTCTGCCGCACCATCATCGAGGTTTCCGAGGTTAACAGAAACGTGTTTCAGGCTCCGGGCGGTGAAGCTGATCCCTTTCGAGTTGTCTCCGGCGAAGAACTTCACCTAATTCCGCCGCTCAACTTCTCCATGGTCGATAACGGTATATTCCGGTCTGGATTCCCTGATTCAGCTAACTTCTCCTTTCTCCAGACTCTCGGTCTCCGCTCAATCATATACTTGTGCCCGGAGCCCTACCCAGAGAGCAATCTCCAGTTCCTTAAATCCAATGGAATCAGGCTTTTCCAGTTTGGTATTGAAGGCAACAAGGAGCCATTTGTGAATATTCCAGACCATAAAATCCGCATGGCACTGAAAGTGCTTCTAGATGAGAAAAACCATCCTGTTCTGATTCATTGTAAGCGAGGCAAGCATCGGACCGGTTGTCTTGTTGGTTGCTTGAGGAAGCTCCAGAAATGGTGTTTGACATCGATATTCGACGAGTACCAACGATTTGCAGCAGCGAAAGCTAGAGTTTCAGATCAAAGATTCATGGAGATATTCGATGTTTCCAGCTTCAGTCATATTCCAATGTCATTCTCTTGTTCCATCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0031347 GO:0032101 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0071704 GO:0080134 GO:0140096 GO:1900150 GO:1900424 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

215

Amino Acids

24.54

Weight (kDa)

7.62

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	53 - 129	3.2e-24	Tyrosine phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0009937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05000 AT1G05000 AT1G05000
fragaria_vesca	FvH4_6g42080
malus_domestica	MD09G1115000.v1.1 MD09G1115100.v1.1 MD17G1106400.v1.1
prunus_persica	Prupe.3G209500_v2.0.a1 Prupe.3G209500_v2.0.a1
pyrus_communis	pycom09g03930 pycom17g09930
rosa_chinensis	RchiOBHm_Chr2g0158001
rosa_laevigata	RLG00000021047
rosa_multiflora	Rmu_sc0000419.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091760
rosa_rugosa	Rorug02G0465100 Rorug02G0465200
rosa_samantha	Rh2AG531000 Rh2BG545500 Rh2DG553600
rosa_wichuraiana	Rw2G043910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	169, 258
AciI	CCGC	6 cut(s)	58, 111, 164, 167, 256, 394
AclWI	GGATC	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	592
AfaI	GTAC	1 cut(s)	536
AflIII	ACRYGT	1 cut(s)	93
AgeI	ACCGGT	1 cut(s)	470
AgsI	TTSAA	1 cut(s)	350
AhdI	GACNNNNNGTC	2 cut(s)	249, 474
AluBI	AGCT	6 cut(s)	7, 119, 224, 499, 560, 606
AluI	AGCT	6 cut(s)	7, 119, 224, 499, 560, 606
Alw26I	GTCTC	2 cut(s)	142, 257
AlwI	GGATC	1 cut(s)	116
ApeKI	GCWGC	2 cut(s)	548, 551
AsiGI	ACCGGT	1 cut(s)	470
Asp700I	GAANNNNTTC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	468
AsuC2I	CCSGG	2 cut(s)	108, 278
AsuHPI	GGTGA	2 cut(s)	125, 146
AvaII	GGWCC	1 cut(s)	468
BaeGI	GKGCMC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	560, 563
BccI	CCATC	3 cut(s)	71, 438, 647
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BcnI	CCSGG	2 cut(s)	108, 278
BcoDI	GTCTC	2 cut(s)	142, 257
BfaI	CTAG	2 cut(s)	416, 561
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	4 cut(s)	58, 167, 549, 552
BlsI	GCNGC	4 cut(s)	59, 168, 550, 553
Bme1390I	CCNGG	2 cut(s)	108, 278
Bme18I	GGWCC	1 cut(s)	468
BmeRI	GACNNNNNGTC	2 cut(s)	249, 474
BmgT120I	GGNCC	1 cut(s)	468
BmiI	GGNNCC	3 cut(s)	105, 282, 363
BmrFI	CCNGG	2 cut(s)	108, 278
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	23
BpmI	CTGGAG	3 cut(s)	224, 287, 485
BpuEI	CTTGAG	1 cut(s)	511
BpuMI	CCSGG	2 cut(s)	108, 278
Bsa29I	ATCGAT	1 cut(s)	521
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	78, 180
BsaWI	WCCGGW	2 cut(s)	201, 470
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	2 cut(s)	304, 337
BseCI	ATCGAT	1 cut(s)	521
BseDI	CCNNGG	2 cut(s)	78, 180
BseGI	GGATG	1 cut(s)	430
BseNI	ACTGG	2 cut(s)	304, 337
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	560, 563
BshTI	ACCGGT	1 cut(s)	470
BshVI	ATCGAT	1 cut(s)	521
BsiSI	CCGG	5 cut(s)	107, 141, 202, 278, 471
BsmAI	GTCTC	2 cut(s)	142, 257
Bso31I	GGTCTC	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	278, 285
Bsp143I	GATC	2 cut(s)	121, 571
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	6 cut(s)	58, 111, 164, 167, 256, 394
BspDI	ATCGAT	1 cut(s)	521
BspLI	GGNNCC	3 cut(s)	105, 282, 363
BspPI	GGATC	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	257
BsrBI	CCGCTC	2 cut(s)	169, 258
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	2 cut(s)	304, 337
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	2 cut(s)	78, 180
BssMI	GATC	2 cut(s)	121, 571
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	461
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	430
BstKTI	GATC	2 cut(s)	124, 574
BstMAI	GTCTC	2 cut(s)	142, 257
BstMBI	GATC	2 cut(s)	121, 571
BstMWI	GCNNNNNNNGC	2 cut(s)	460, 557
BstSCI	CCNGG	2 cut(s)	106, 276
BstSFI	CTRYAG	1 cut(s)	27
BstSLI	GKGCMC	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	560, 563
BstV2I	GAAGAC	1 cut(s)	23
Bsu15I	ATCGAT	1 cut(s)	521
BsuTUI	ATCGAT	1 cut(s)	521
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	1 cut(s)	461
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	468
ClaI	ATCGAT	1 cut(s)	521
CpoI	CGGWCCG	1 cut(s)	468
Csp6I	GTAC	1 cut(s)	535
CspAI	ACCGGT	1 cut(s)	470
CspI	CGGWCCG	1 cut(s)	468
CviAII	CATG	3 cut(s)	181, 397, 583
CviQI	GTAC	1 cut(s)	535
DpnI	GATC	2 cut(s)	123, 573
DpnII	GATC	2 cut(s)	121, 571
DriI	GACNNNNNGTC	2 cut(s)	249, 474
Eam1105I	GACNNNNNGTC	2 cut(s)	249, 474
EciI	GGCGGA	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	468
Eco57I	CTGAAG	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	3 cut(s)	184, 400, 586
FaiI	YATR	8 cut(s)	182, 197, 266, 268, 387, 398, 584, 615
FatI	CATG	3 cut(s)	180, 396, 582
Fnu4HI	GCNGC	4 cut(s)	58, 167, 549, 552
FokI	GGATG	1 cut(s)	417
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	4 cut(s)	58, 167, 549, 552
FspBI	CTAG	2 cut(s)	416, 561
GluI	GCNGC	4 cut(s)	58, 167, 549, 552
GsuI	CTGGAG	3 cut(s)	224, 287, 485
HapII	CCGG	5 cut(s)	107, 141, 202, 278, 471
Hin1II	CATG	3 cut(s)	184, 400, 586
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	6 cut(s)	210, 218, 244, 324, 442, 579
HpaI	GTTAAC	1 cut(s)	85
HpaII	CCGG	5 cut(s)	107, 141, 202, 278, 471
HphI	GGTGA	2 cut(s)	125, 146
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	4 cut(s)	79, 441, 468, 571
Hpy188III	TCNNGA	5 cut(s)	207, 241, 380, 416, 502
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	460, 557
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	184, 400, 586
KspAI	GTTAAC	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	121, 571
LmnI	GCTCC	4 cut(s)	109, 280, 361, 504
Lsp1109I	GCAGC	2 cut(s)	560, 563
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	2 cut(s)	416, 561
MaeII	ACGT	1 cut(s)	93
MalI	GATC	2 cut(s)	123, 573
MbiI	CCGCTC	2 cut(s)	169, 258
MboI	GATC	2 cut(s)	121, 571
MboII	GAAGA	3 cut(s)	28, 59, 158
MhlI	GDGCHC	2 cut(s)	278, 285
MluCI	AATT	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	4 cut(s)	64, 73, 449, 486
MroXI	GAANNNNTTC	1 cut(s)	150
MseI	TTAA	2 cut(s)	84, 312
MspI	CCGG	5 cut(s)	107, 141, 202, 278, 471
MspR9I	CCNGG	2 cut(s)	108, 278
MwoI	GCNNNNNNNGC	2 cut(s)	460, 557
NciI	CCSGG	2 cut(s)	108, 278
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	2 cut(s)	121, 571
NlaIII	CATG	3 cut(s)	184, 400, 586
NlaIV	GGNNCC	3 cut(s)	105, 282, 363
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	5 cut(s)	210, 218, 324, 442, 579
PinAI	ACCGGT	1 cut(s)	470
PkrI	GCNGC	4 cut(s)	59, 168, 550, 553
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PspN4I	GGNNCC	3 cut(s)	105, 282, 363
PspPI	GGNCC	1 cut(s)	468
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
Rsr2I	CGGWCCG	1 cut(s)	468
RsrII	CGGWCCG	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	84, 312
SatI	GCNGC	4 cut(s)	58, 167, 549, 552
Sau3AI	GATC	2 cut(s)	121, 571
Sau96I	GGNCC	1 cut(s)	468
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	108, 278
SduI	GDGCHC	2 cut(s)	278, 285
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	468
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	6 cut(s)	58, 111, 164, 167, 256, 394
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	2 cut(s)	416, 561
StyD4I	CCNGG	2 cut(s)	106, 276
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	6 cut(s)	69, 130, 186, 521, 528, 594
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	1 cut(s)	159
TauI	GCSGC	2 cut(s)	60, 169
TfiI	GAWTC	5 cut(s)	210, 218, 324, 442, 579
Tru1I	TTAA	2 cut(s)	84, 312
Tru9I	TTAA	2 cut(s)	84, 312
TscAI	CASTG	1 cut(s)	408
TseI	GCWGC	2 cut(s)	548, 551
TspDTI	ATGAA	3 cut(s)	17, 434, 571
TspRI	CASTG	1 cut(s)	408
VpaK11BI	GGWCC	1 cut(s)	468
XbaI	TCTAGA	1 cut(s)	415
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	2 cut(s)	416, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.