Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009937

Physical Location & Seq

Genomic Coordinates Reverse (-)

59644048 .. 59644437

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0465100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAAGATCTTCAGCAGACAAAGAAAGTTGATATGGTTTCGTGATTTGATACGCCGCAAGTCCAAAACAATCTTCACTAGAAAACAATATAAGTCAGAAAAAGAAGAACAAGAACGAGAACAAGGAGGAGGAGGAGGAGGAGGAGAAGCAGAAGAAGTAGGAACAGGGGCAGAACAAGAACAAGAAGAAGAAGAAAGAGGAGGAGGAGGTAAAGACAGGTGGTTCAAGGAACTCCCAGATGACGTCATGCAACTGATTCTGCACCGACTGCCCCTATCAGATTATCTTAATTGGCGTGATGTAAGCCCTTGTTGGCGAGCCGCAATTGACAGTAAGCGTTGGCTTCCTCCTGCATGCTCATCAACTCGCATGGCTTTTGCACGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0031347 GO:0032101 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0071704 GO:0080134 GO:0140096 GO:1900150 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

129

Amino Acids

15.09

Weight (kDa)

8.97

Isoelectric Point (pI)

75.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	77 - 113	1.2e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05000 AT1G05000 AT1G05000
fragaria_vesca	FvH4_6g42080
malus_domestica	MD09G1115000.v1.1 MD09G1115100.v1.1 MD17G1106400.v1.1
prunus_persica	Prupe.3G209500_v2.0.a1 Prupe.3G209500_v2.0.a1
pyrus_communis	pycom09g03930 pycom17g09930
rosa_chinensis	RchiOBHm_Chr2g0158001
rosa_laevigata	RLG00000021047
rosa_multiflora	Rmu_sc0000419.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091760
rosa_rugosa	Rorug02G0465100 Rorug02G0465200
rosa_samantha	Rh2AG531000 Rh2BG545500 Rh2DG553600
rosa_wichuraiana	Rw2G043910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	246
AciI	CCGC	2 cut(s)	55, 321
AcyI	GRCGYC	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
Asp700I	GAANNNNTTC	1 cut(s)	8
BfaI	CTAG	2 cut(s)	78, 388
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	2 cut(s)	55, 321
BlsI	GCNGC	2 cut(s)	56, 322
BsaHI	GRCGYC	1 cut(s)	243
BseRI	GAGGAG	9 cut(s)	141, 144, 147, 150, 153, 156, 213, 216, 219
BsgI	GTGCAG	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	2 cut(s)	55, 321
BssMI	GATC	1 cut(s)	6
BssNI	GRCGYC	1 cut(s)	243
Bst4CI	ACNGT	2 cut(s)	332, 384
BstACI	GRCGYC	1 cut(s)	243
BstAPI	GCANNNNNTGC	1 cut(s)	268
BstC8I	GCNNGC	2 cut(s)	318, 355
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	357
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
Cac8I	GCNNGC	2 cut(s)	318, 355
CviAII	CATG	3 cut(s)	247, 354, 370
CviJI	RGCY	4 cut(s)	306, 320, 343, 374
CviKI_1	RGCY	4 cut(s)	306, 320, 343, 374
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
FaeI	CATG	3 cut(s)	250, 357, 373
FaiI	YATR	5 cut(s)	34, 90, 248, 355, 371
FatI	CATG	3 cut(s)	246, 353, 369
Fnu4HI	GCNGC	2 cut(s)	55, 321
Fsp4HI	GCNGC	2 cut(s)	55, 321
FspBI	CTAG	2 cut(s)	78, 388
GluI	GCNGC	2 cut(s)	55, 321
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	250, 357, 373
HinfI	GANTC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	97, 280
Hpy188III	TCNNGA	1 cut(s)	41
HpyCH4III	ACNGT	2 cut(s)	332, 384
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	4 cut(s)	250, 262, 353, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	250, 357, 373
Kzo9I	GATC	1 cut(s)	6
LpnPI	CCDG	4 cut(s)	150, 202, 249, 363
MaeI	CTAG	2 cut(s)	78, 388
MaeII	ACGT	1 cut(s)	243
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	7 cut(s)	16, 64, 116, 164, 197, 200, 203
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	1 cut(s)	6
MluCI	AATT	2 cut(s)	289, 324
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	288
MunI	CAATTG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	268
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	3 cut(s)	250, 357, 373
NspI	RCATGY	1 cut(s)	357
PaeI	GCATGC	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	56, 322
PsuI	RGATCY	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	2 cut(s)	55, 321
Sau3AI	GATC	1 cut(s)	6
SetI	ASST	3 cut(s)	211, 221, 246
SphI	GCATGC	1 cut(s)	357
Sse9I	AATT	2 cut(s)	289, 324
SsiI	CCGC	2 cut(s)	55, 321
SspMI	CTAG	2 cut(s)	78, 388
TaaI	ACNGT	2 cut(s)	332, 384
TaiI	ACGT	1 cut(s)	246
TasI	AATT	2 cut(s)	289, 324
TauI	GCSGC	2 cut(s)	57, 323
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	357
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	78, 388
ZraI	GACGTC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.