Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009937

Physical Location & Seq

Genomic Coordinates Forward (+)

70461145 .. 70464734

Gene Structure 3590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G043910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAAACTGGAGCTCGATCACGTTACCGACGAGATGTGCCGCACAATCGAAGTCGTCGGAGGCGTCCACCCCTCTCCGGCCGCCGCCGCGTCTGACGGAGAGTGCGCCGATGATCTCTTCATTCCTCCGCTCAACTTCGCCATGGTCGATAACGGCATTTTCCGGTCCGGCTTCCCTGACTCCAACAACTTGTCCTTCCTCCAAACCCTAGGCCTCCGCTCCATTATATGTCTGTGTCCGGAGCCGTATCCAGAGACGAACGTGGAGTTCCTCAAGTCGAACGGGATCAAGCTCTTTCAATTTGGGATCGAAGGCTATAAGGAGCCTTTTATAAACATCCCAGAGGATACGATCCGTGAAGCACTAAAAGTTGTCCTTGATGTAAGGAATCACCCCATCTTAATTCATTGCAAACGAGGGAAGCATCGAACTGGTTGTCTGGTGGGATGCTTGAGAAAACTGCAGAGATGGTGCCTGTCATCCGTTTTTGATGAGTACCAGCGTTTTGCAGCCGCCAAAGCCAGAGTTGCTGATCAAAGGTTTATGGAGATGTTTGATGTTTCTAGTTTGAAACATTTACCGATGCCATTTTCATGTTCGAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0031347 GO:0032101 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0071704 GO:0080134 GO:0140096 GO:1900150 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

202

Amino Acids

22.79

Weight (kDa)

6.59

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	41 - 192	5.9e-63	Tyrosine phosphatase family
PTP-NADK	PF22741	54 - 177	7.4e-08	DSP-PTPase phosphatase fused to NAD+ Kinase
PTP-SAK	PF22784	63 - 151	2.7e-06	Swiss Army Knife protein, DSP-PTPase phosphatase domain
Y_phosphatase3	PF13350	114 - 171	1.9e-06	Tyrosine phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05000 AT1G05000 AT1G05000
fragaria_vesca	FvH4_6g42080
malus_domestica	MD09G1115000.v1.1 MD09G1115100.v1.1 MD17G1106400.v1.1
prunus_persica	Prupe.3G209500_v2.0.a1 Prupe.3G209500_v2.0.a1
pyrus_communis	pycom09g03930 pycom17g09930
rosa_chinensis	RchiOBHm_Chr2g0158001
rosa_laevigata	RLG00000021047
rosa_multiflora	Rmu_sc0000419.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091760
rosa_rugosa	Rorug02G0465100 Rorug02G0465200
rosa_samantha	Rh2AG531000 Rh2BG545500 Rh2DG553600
rosa_wichuraiana	Rw2G043910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	332
AccB1I	GGYRCC	1 cut(s)	471
AccBSI	CCGCTC	2 cut(s)	130, 219
AccII	CGCG	1 cut(s)	89
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	7 cut(s)	40, 81, 84, 87, 128, 217, 513
AclWI	GGATC	3 cut(s)	293, 314, 346
AcoI	YGGCCR	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	299, 571
AluBI	AGCT	2 cut(s)	13, 292
AluI	AGCT	2 cut(s)	13, 292
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	3 cut(s)	293, 314, 346
Aor13HI	TCCGGA	1 cut(s)	238
AoxI	GGCC	2 cut(s)	78, 211
ApeKI	GCWGC	1 cut(s)	509
ArsI	GACNNNNNNTTYG	2 cut(s)	421, 453
AspA2I	CCTAGG	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	383
AsuII	TTCGAA	1 cut(s)	599
AvaII	GGWCC	1 cut(s)	165
AvrII	CCTAGG	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	471
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	521
BccI	CCATC	2 cut(s)	404, 462
BceAI	ACGGC	2 cut(s)	169, 229
BciVI	GTATCC	2 cut(s)	258, 340
BclI	TGATCA	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	2 cut(s)	209, 564
BfmI	CTRYAG	1 cut(s)	461
BfuI	GTATCC	2 cut(s)	258, 340
BisI	GCNGC	6 cut(s)	40, 81, 84, 87, 510, 513
BlnI	CCTAGG	1 cut(s)	208
BlsI	GCNGC	6 cut(s)	41, 82, 85, 88, 511, 514
Bme18I	GGWCC	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	165
BmiI	GGNNCC	3 cut(s)	243, 324, 473
BmsI	GCATC	3 cut(s)	433, 437, 573
BpmI	CTGGAG	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	599
BpuEI	CTTGAG	2 cut(s)	257, 472
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	141, 208
BsaWI	WCCGGW	2 cut(s)	162, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	12, 436
Bse3DI	GCAATG	1 cut(s)	406
BseAI	TCCGGA	1 cut(s)	238
BseDI	CCNNGG	2 cut(s)	141, 208
BseGI	GGATG	3 cut(s)	336, 452, 479
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	406
BseNI	ACTGG	2 cut(s)	12, 436
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	521
Bsh1236I	CGCG	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	80, 213
BshNI	GGYRCC	1 cut(s)	471
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	4 cut(s)	77, 163, 168, 239
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	248
BsmBI	CGTCTC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	80, 213
Bsp119I	TTCGAA	1 cut(s)	599
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	6 cut(s)	16, 112, 285, 306, 351, 532
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	7 cut(s)	40, 81, 84, 87, 128, 217, 513
BspANI	GGCC	2 cut(s)	80, 213
BspEI	TCCGGA	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	3 cut(s)	243, 324, 473
BspMAI	CTGCAG	1 cut(s)	465
BspPI	GGATC	3 cut(s)	293, 314, 346
BspT104I	TTCGAA	1 cut(s)	599
BspT107I	GGYRCC	1 cut(s)	471
BsrBI	CCGCTC	2 cut(s)	130, 219
BsrDI	GCAATG	1 cut(s)	406
BsrI	ACTGG	2 cut(s)	12, 436
BssECI	CCNNGG	2 cut(s)	141, 208
BssMI	GATC	6 cut(s)	16, 112, 285, 306, 351, 532
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	2 cut(s)	141, 208
Bst6I	CTCTTC	2 cut(s)	122, 596
BstACI	GRCGYC	1 cut(s)	63
BstBI	TTCGAA	1 cut(s)	599
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	3 cut(s)	336, 452, 479
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	6 cut(s)	19, 115, 288, 309, 354, 535
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	6 cut(s)	16, 112, 285, 306, 351, 532
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 518, 527
BstSFI	CTRYAG	1 cut(s)	461
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	521
BstZI	CGGCCG	1 cut(s)	78
BsuI	GTATCC	2 cut(s)	258, 340
BsuRI	GGCC	2 cut(s)	80, 213
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	3 cut(s)	336, 452, 479
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	165
CpoI	CGGWCCG	1 cut(s)	165
CseI	GACGC	2 cut(s)	52, 78
Csp6I	GTAC	1 cut(s)	496
CspI	CGGWCCG	1 cut(s)	165
CviAII	CATG	2 cut(s)	142, 594
CviQI	GTAC	1 cut(s)	496
DpnI	GATC	6 cut(s)	18, 114, 287, 308, 353, 534
DpnII	GATC	6 cut(s)	16, 112, 285, 306, 351, 532
EaeI	YGGCCR	1 cut(s)	78
EagI	CGGCCG	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	122, 596
EarI	CTCTTC	2 cut(s)	122, 596
Ecl136II	GAGCTC	1 cut(s)	13
EclXI	CGGCCG	1 cut(s)	78
Eco130I	CCWWGG	2 cut(s)	141, 208
Eco147I	AGGCCT	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	165
Eco52I	CGGCCG	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoT14I	CCWWGG	2 cut(s)	141, 208
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	2 cut(s)	141, 208
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	2 cut(s)	145, 597
FaiI	YATR	7 cut(s)	143, 227, 229, 318, 332, 545, 595
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FatI	CATG	2 cut(s)	141, 593
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	6 cut(s)	40, 81, 84, 87, 510, 513
FokI	GGATG	3 cut(s)	323, 459, 466
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	6 cut(s)	40, 81, 84, 87, 510, 513
FspBI	CTAG	2 cut(s)	209, 564
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	6 cut(s)	40, 81, 84, 87, 510, 513
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	80, 213
HapII	CCGG	4 cut(s)	77, 163, 168, 239
HgaI	GACGC	2 cut(s)	52, 78
HhaI	GCGC	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	145, 597
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HinfI	GANTC	2 cut(s)	179, 388
HpaII	CCGG	4 cut(s)	77, 163, 168, 239
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	59, 94
Hpy188III	TCNNGA	2 cut(s)	239, 251
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	2 cut(s)	32, 59
HpyAV	CCTTC	2 cut(s)	205, 305
HpyCH4IV	ACGT	2 cut(s)	21, 261
HpyCH4V	TGCA	3 cut(s)	411, 463, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 518, 527
HpySE526I	ACGT	2 cut(s)	21, 261
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	145, 597
HspAI	GCGC	1 cut(s)	105
Kpn2I	TCCGGA	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	6 cut(s)	16, 112, 285, 306, 351, 532
LmnI	GCTCC	4 cut(s)	10, 224, 241, 322
Lsp1109I	GCAGC	1 cut(s)	521
LweI	GCATC	3 cut(s)	433, 437, 573
MaeI	CTAG	2 cut(s)	209, 564
MaeII	ACGT	2 cut(s)	21, 261
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	6 cut(s)	18, 114, 287, 308, 353, 534
MbiI	CCGCTC	2 cut(s)	130, 219
MboI	GATC	6 cut(s)	16, 112, 285, 306, 351, 532
MboII	GAAGA	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	2 cut(s)	299, 402
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	2 cut(s)	37, 207
MnlI	CCTC	9 cut(s)	53, 82, 135, 209, 224, 281, 337, 410, 597
MroI	TCCGGA	1 cut(s)	238
MseI	TTAA	1 cut(s)	401
MslI	CAYNNNNRTG	1 cut(s)	592
MspI	CCGG	4 cut(s)	77, 163, 168, 239
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	3 cut(s)	86, 518, 527
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	6 cut(s)	16, 112, 285, 306, 351, 532
NlaIII	CATG	2 cut(s)	145, 597
NlaIV	GGNNCC	3 cut(s)	243, 324, 473
NspV	TTCGAA	1 cut(s)	599
PceI	AGGCCT	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 60, 144
PfeI	GAWTC	1 cut(s)	388
PkrI	GCNGC	6 cut(s)	41, 82, 85, 88, 511, 514
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PsiI	TTATAA	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	243, 324, 473
PspPI	GGNCC	1 cut(s)	165
PstI	CTGCAG	1 cut(s)	465
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
RseI	CAYNNNNRTG	1 cut(s)	592
Rsr2I	CGGWCCG	1 cut(s)	165
RsrII	CGGWCCG	1 cut(s)	165
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	6 cut(s)	40, 81, 84, 87, 510, 513
Sau3AI	GATC	6 cut(s)	16, 112, 285, 306, 351, 532
Sau96I	GGNCC	1 cut(s)	165
SchI	GAGTC	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	6 cut(s)	15, 24, 264, 294, 542, 608
SfaNI	GCATC	3 cut(s)	433, 437, 573
SfcI	CTRYAG	1 cut(s)	461
SfuI	TTCGAA	1 cut(s)	599
SinI	GGWCC	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	592
SmlI	CTYRAG	2 cut(s)	272, 451
SmoI	CTYRAG	2 cut(s)	272, 451
Sse9I	AATT	2 cut(s)	299, 402
SseBI	AGGCCT	1 cut(s)	213
SsiI	CCGC	7 cut(s)	40, 81, 84, 87, 128, 217, 513
SspMI	CTAG	2 cut(s)	209, 564
SstI	GAGCTC	1 cut(s)	15
StuI	AGGCCT	1 cut(s)	213
StyI	CCWWGG	2 cut(s)	141, 208
TaiI	ACGT	2 cut(s)	24, 264
TaqI	TCGA	7 cut(s)	15, 48, 147, 278, 309, 427, 599
TasI	AATT	2 cut(s)	299, 402
TauI	GCSGC	5 cut(s)	42, 83, 86, 89, 515
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TseI	GCWGC	1 cut(s)	509
TspDTI	ATGAA	4 cut(s)	17, 109, 395, 582
TspGWI	ACGGA	3 cut(s)	111, 344, 472
VpaK11BI	GGWCC	1 cut(s)	165
XmaJI	CCTAGG	1 cut(s)	208
XspI	CTAG	2 cut(s)	209, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.