Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009937

Physical Location & Seq

Genomic Coordinates Reverse (-)

8777571 .. 8780419

Gene Structure 2849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1115000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAAACTGGAGTTCAATAATCATCACCATCCAGAGGATCAAGAGACCGATAGCGATAGCGAGATGTGCAGAACTATCGAAGTCGTCGCTGGAAGCGGAGGCTTCCAGCTATCTCCGGCAAAGCAAACCCCCGAAGACGACGTCTGCGCCGACGACCTCTTCATTCCGCCGCTCAACTTCTCCTTGGTCGATAACGGCATTTTCAGGTCGGGTTTCCCGGAGTCTGCCAACTTCTCCTTTCTCCAAACCCTAGGCCTCCGCTCCATCATATGTTTGTGTCCAGAGCCGTATCCAGAGGCGAATATGGAATTTCTAAAATCCAATGGGATTAAGCTCTTCCAATTTGGGATTGATGGCTACAAGGAGCCTTTTGTAAATATCCCGGACGATACAATCCGTGAAGCACTAAAAGTTGTCCTTGATGTAAGGAATCACCCTGTCTTAATTCATTGCAAACGAGGCAAGCATCGAACGGGTTGTCTGGTGGGGTGCTTGAGAAAATTGCAGAGATGGTGCCTCACGTCTGTTTTTGACGAATACCAGCGGTTTGCAGCTGCGAAAGCTAGAGTTGCGGATCAGAGGTTTATGGAGATGTTCGATGTTTCTAGCATGAAACATCTGCCGATGACGTTTTCATGTTCCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0031347 GO:0032101 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0071704 GO:0080134 GO:0140096 GO:1900150 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

217

Amino Acids

24.54

Weight (kDa)

5.98

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	55 - 206	4.4e-64	Tyrosine phosphatase family
PTP-SAK	PF22784	77 - 166	9e-07	Swiss Army Knife protein, DSP-PTPase phosphatase domain
PTP-NADK	PF22741	81 - 173	2.2e-07	DSP-PTPase phosphatase fused to NAD+ Kinase
Y_phosphatase3	PF13350	127 - 186	1e-06	Tyrosine phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05000 AT1G05000 AT1G05000
fragaria_vesca	FvH4_6g42080
malus_domestica	MD09G1115000.v1.1 MD09G1115100.v1.1 MD17G1106400.v1.1
prunus_persica	Prupe.3G209500_v2.0.a1 Prupe.3G209500_v2.0.a1
pyrus_communis	pycom09g03930 pycom17g09930
rosa_chinensis	RchiOBHm_Chr2g0158001
rosa_laevigata	RLG00000021047
rosa_multiflora	Rmu_sc0000419.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091760
rosa_rugosa	Rorug02G0465100 Rorug02G0465200
rosa_samantha	Rh2AG531000 Rh2BG545500 Rh2DG553600
rosa_wichuraiana	Rw2G043910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	513
AccBSI	CCGCTC	2 cut(s)	172, 261
AciI	CCGC	6 cut(s)	96, 167, 170, 259, 544, 572
AclWI	GGATC	2 cut(s)	45, 582
AcsI	RAATTY	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	16
AjiI	CACGTC	1 cut(s)	522
AluBI	AGCT	4 cut(s)	109, 334, 554, 563
AluI	AGCT	4 cut(s)	109, 334, 554, 563
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	2 cut(s)	45, 582
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	2 cut(s)	551, 554
ApoI	RAATTY	1 cut(s)	308
ArsI	GACNNNNNNTTYG	4 cut(s)	126, 158, 463, 495
AspA2I	CCTAGG	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	149
AsuC2I	CCSGG	2 cut(s)	218, 383
AsuHPI	GGTGA	2 cut(s)	17, 425
AvrII	CCTAGG	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	541, 563
BccI	CCATC	4 cut(s)	36, 272, 347, 504
BceAI	ACGGC	2 cut(s)	211, 271
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciVI	GTATCC	1 cut(s)	300
BcnI	CCSGG	2 cut(s)	218, 383
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	3 cut(s)	251, 564, 606
BfuI	GTATCC	1 cut(s)	300
BisI	GCNGC	3 cut(s)	170, 552, 555
BlnI	CCTAGG	1 cut(s)	250
BlsI	GCNGC	3 cut(s)	171, 553, 556
Bme1390I	CCNGG	2 cut(s)	218, 383
BmgBI	CACGTC	1 cut(s)	522
BmiI	GGNNCC	2 cut(s)	366, 515
BmrFI	CCNGG	2 cut(s)	218, 383
BmsI	GCATC	1 cut(s)	475
BpiI	GAAGAC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	514
BpuMI	CCSGG	2 cut(s)	218, 383
BsaHI	GRCGYC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	183, 250
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	12
Bse3DI	GCAATG	1 cut(s)	448
BseDI	CCNNGG	2 cut(s)	183, 250
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	448
BseNI	ACTGG	1 cut(s)	12
BseXI	GCAGC	2 cut(s)	541, 563
BsgI	GTGCAG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	513
BsiSI	CCGG	3 cut(s)	116, 218, 383
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	37, 574
BspACI	CCGC	6 cut(s)	96, 167, 170, 259, 544, 572
BspANI	GGCC	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	366, 515
BspPI	GGATC	2 cut(s)	45, 582
BspQI	GCTCTTC	1 cut(s)	341
BspT107I	GGYRCC	1 cut(s)	513
BspTNI	GGTCTC	1 cut(s)	38
BsrBI	CCGCTC	2 cut(s)	172, 261
BsrDI	GCAATG	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	183, 250
BssMI	GATC	2 cut(s)	37, 574
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	2 cut(s)	183, 250
Bst6I	CTCTTC	2 cut(s)	164, 341
BstACI	GRCGYC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	464
BstF5I	GGATG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	40, 577
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	2 cut(s)	37, 574
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 459, 560, 569
BstSCI	CCNGG	2 cut(s)	216, 381
BstV1I	GCAGC	2 cut(s)	541, 563
BstV2I	GAAGAC	1 cut(s)	141
BsuI	GTATCC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	522
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	464
CfoI	GCGC	1 cut(s)	149
CviAII	CATG	2 cut(s)	610, 636
CviJI	RGCY	9 cut(s)	102, 109, 255, 286, 334, 357, 367, 554, 563
CviKI_1	RGCY	9 cut(s)	102, 109, 255, 286, 334, 357, 367, 554, 563
DpnI	GATC	2 cut(s)	39, 576
DpnII	GATC	2 cut(s)	37, 574
Eam1104I	CTCTTC	2 cut(s)	164, 341
EarI	CTCTTC	2 cut(s)	164, 341
EciI	GGCGGA	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	183, 250
Eco147I	AGGCCT	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	38
EcoT14I	CCWWGG	2 cut(s)	183, 250
ErhI	CCWWGG	2 cut(s)	183, 250
FaeI	CATG	2 cut(s)	613, 639
FaiI	YATR	6 cut(s)	269, 271, 305, 587, 611, 637
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FatI	CATG	2 cut(s)	609, 635
FauNDI	CATATG	1 cut(s)	269
Fnu4HI	GCNGC	3 cut(s)	170, 552, 555
FokI	GGATG	1 cut(s)	15
Fsp4HI	GCNGC	3 cut(s)	170, 552, 555
FspBI	CTAG	3 cut(s)	251, 564, 606
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	3 cut(s)	170, 552, 555
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	3 cut(s)	116, 218, 383
HhaI	GCGC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	2 cut(s)	613, 639
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	2 cut(s)	221, 430
HpaII	CCGG	3 cut(s)	116, 218, 383
HphI	GGTGA	2 cut(s)	17, 425
Hpy188I	TCNGA	1 cut(s)	579
Hpy188III	TCNNGA	4 cut(s)	32, 41, 281, 293
Hpy99I	CGWCG	3 cut(s)	89, 143, 155
HpyCH4IV	ACGT	3 cut(s)	141, 521, 629
HpyCH4V	TGCA	4 cut(s)	69, 453, 505, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 459, 560, 569
HpySE526I	ACGT	3 cut(s)	141, 521, 629
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	613, 639
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	37, 574
LguI	GCTCTTC	1 cut(s)	341
LmnI	GCTCC	2 cut(s)	266, 364
Lsp1109I	GCAGC	2 cut(s)	541, 563
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	3 cut(s)	251, 564, 606
MaeII	ACGT	3 cut(s)	141, 521, 629
MalI	GATC	2 cut(s)	39, 576
MbiI	CCGCTC	2 cut(s)	172, 261
MboI	GATC	2 cut(s)	37, 574
MboII	GAAGA	3 cut(s)	146, 151, 328
MluCI	AATT	4 cut(s)	308, 341, 444, 500
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	8 cut(s)	28, 92, 167, 266, 289, 452, 527, 573
MseI	TTAA	2 cut(s)	330, 443
MspA1I	CMGCKG	2 cut(s)	544, 554
MspI	CCGG	3 cut(s)	116, 218, 383
MspR9I	CCNGG	2 cut(s)	218, 383
MwoI	GCNNNNNNNGC	4 cut(s)	66, 459, 560, 569
NciI	CCSGG	2 cut(s)	218, 383
NdeI	CATATG	1 cut(s)	269
NdeII	GATC	2 cut(s)	37, 574
NlaIII	CATG	2 cut(s)	613, 639
NlaIV	GGNNCC	2 cut(s)	366, 515
PceI	AGGCCT	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	430
PflFI	GACNNNGTC	1 cut(s)	140
PfoI	TCCNGGA	2 cut(s)	216, 381
PkrI	GCNGC	3 cut(s)	171, 553, 556
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	366, 515
PsyI	GACNNNGTC	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	554
SapI	GCTCTTC	1 cut(s)	341
SaqAI	TTAA	2 cut(s)	330, 443
SatI	GCNGC	3 cut(s)	170, 552, 555
Sau3AI	GATC	2 cut(s)	37, 574
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	2 cut(s)	218, 383
SfaNI	GCATC	1 cut(s)	475
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
Sse9I	AATT	4 cut(s)	308, 341, 444, 500
SseBI	AGGCCT	1 cut(s)	255
SsiI	CCGC	6 cut(s)	96, 167, 170, 259, 544, 572
SspMI	CTAG	3 cut(s)	251, 564, 606
StuI	AGGCCT	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	216, 381
StyI	CCWWGG	2 cut(s)	183, 250
TaiI	ACGT	3 cut(s)	144, 524, 632
TaqI	TCGA	4 cut(s)	78, 189, 469, 597
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	4 cut(s)	308, 341, 444, 500
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	2 cut(s)	330, 443
Tru9I	TTAA	2 cut(s)	330, 443
TseI	GCWGC	2 cut(s)	551, 554
TspDTI	ATGAA	5 cut(s)	17, 151, 437, 624, 626
TspGWI	ACGGA	1 cut(s)	386
Tth111I	GACNNNGTC	1 cut(s)	140
XapI	RAATTY	1 cut(s)	308
XmaJI	CCTAGG	1 cut(s)	250
XspI	CTAG	3 cut(s)	251, 564, 606
ZraI	GACGTC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.