Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009937

Physical Location & Seq

Genomic Coordinates Reverse (-)

7590906 .. 7593954

Gene Structure 3049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g09930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAAACTCGAGCTCAATAATCTTCATCATCCGGAGGATCAAGAGACCGACAGCGAGAGCGAGATGTGCAGAACAATCGAAGTTGTCGCCGGAAGCGGAGGCGTCCAGCTCTCTCTGGCGAAGAAGACCTCCGGCGCTGACGACTGCCCCGACGACCTCTTCATTCCGCCGCTCAACTTCTCCTTGGTCGATAACGGCATTTTCAGGTCGGGCTTCCCGGAGCCCGCCAACTTCTCCTTCCTCCACACTCTAGGCCTTCGCTCCATCATATGTTTGTGTCCGGAGCCGTATCCAGAGCCGAATACGGAGTTTTTAAAGTCCAACGGGATTAAGCTTTTTCAGTTTGGAATTGAAGGCTACAAGGAGCCTTTTGTAAACATCCCGGATGATACAATCCGTGAAGCGCTGAAAGTCGTCCTCGATGTAAGGAATCACCCTGTCTTAATTCATTGTAAACGAGGGAAGCATCGAACGGGTTGTCTGGTAGGGTGTTTGAGAAAATTGCAGAGATGGTGCCTCACGTCTGTTTTTGACGAATACCAGCGGTTTGCAGCTGCGAAAGCGAGAGTTGCGGATCAGAGGTTTATGGAGATGTTTGATGTTTCAAGTTTGAAACATCTGCCGATGACATTTTCATGTTCCAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0031347 GO:0032101 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0071704 GO:0080134 GO:0140096 GO:1900150 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

217

Amino Acids

24.42

Weight (kDa)

6.38

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05000 AT1G05000 AT1G05000
fragaria_vesca	FvH4_6g42080
malus_domestica	MD09G1115000.v1.1 MD09G1115100.v1.1 MD17G1106400.v1.1
prunus_persica	Prupe.3G209500_v2.0.a1 Prupe.3G209500_v2.0.a1
pyrus_communis	pycom09g03930 pycom17g09930
rosa_chinensis	RchiOBHm_Chr2g0158001
rosa_laevigata	RLG00000021047
rosa_multiflora	Rmu_sc0000419.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091760
rosa_rugosa	Rorug02G0465100 Rorug02G0465200
rosa_samantha	Rh2AG531000 Rh2BG545500 Rh2DG553600
rosa_wichuraiana	Rw2G043910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	513
AccBSI	CCGCTC	1 cut(s)	172
AccIII	TCCGGA	2 cut(s)	31, 280
AciI	CCGC	6 cut(s)	96, 167, 170, 225, 544, 572
AclWI	GGATC	2 cut(s)	45, 582
AcyI	GRCGYC	1 cut(s)	102
AfeI	AGCGCT	1 cut(s)	405
AgsI	TTSAA	3 cut(s)	353, 606, 613
AjiI	CACGTC	1 cut(s)	522
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	4 cut(s)	13, 109, 334, 554
AluI	AGCT	4 cut(s)	13, 109, 334, 554
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	2 cut(s)	45, 582
Ama87I	CYCGRG	1 cut(s)	8
Aor13HI	TCCGGA	2 cut(s)	31, 280
Aor51HI	AGCGCT	1 cut(s)	405
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	2 cut(s)	551, 554
ArsI	GACNNNNNNTTYG	2 cut(s)	463, 495
AspLEI	GCGC	2 cut(s)	137, 406
AsuC2I	CCSGG	2 cut(s)	218, 383
AsuHPI	GGTGA	1 cut(s)	425
AvaI	CYCGRG	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	513
BanII	GRGCYC	2 cut(s)	15, 225
BbsI	GAAGAC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	541, 563
BccI	CCATC	2 cut(s)	272, 504
BceAI	ACGGC	2 cut(s)	211, 271
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciVI	GTATCC	1 cut(s)	300
BcnI	CCSGG	2 cut(s)	218, 383
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	251
BfoI	RGCGCY	2 cut(s)	138, 407
BfuI	GTATCC	1 cut(s)	300
BisI	GCNGC	3 cut(s)	170, 552, 555
BlsI	GCNGC	3 cut(s)	171, 553, 556
Bme1390I	CCNGG	2 cut(s)	218, 383
BmeT110I	CYCGRG	1 cut(s)	8
BmgBI	CACGTC	1 cut(s)	522
BmiI	GGNNCC	4 cut(s)	222, 285, 366, 515
BmrFI	CCNGG	2 cut(s)	218, 383
BmsI	GCATC	1 cut(s)	475
BpiI	GAAGAC	1 cut(s)	131
BpuMI	CCSGG	2 cut(s)	218, 383
BsaHI	GRCGYC	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	183
BsaWI	WCCGGW	2 cut(s)	31, 280
BseAI	TCCGGA	2 cut(s)	31, 280
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	3 cut(s)	28, 378, 391
BseXI	GCAGC	2 cut(s)	541, 563
BsgI	GTGCAG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	8
BsiSI	CCGG	6 cut(s)	32, 90, 132, 218, 281, 383
BsmAI	GTCTC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	15, 225
Bsp13I	TCCGGA	2 cut(s)	31, 280
Bsp143I	GATC	2 cut(s)	37, 574
BspACI	CCGC	6 cut(s)	96, 167, 170, 225, 544, 572
BspANI	GGCC	1 cut(s)	255
BspEI	TCCGGA	2 cut(s)	31, 280
BspLI	GGNNCC	4 cut(s)	222, 285, 366, 515
BspPI	GGATC	2 cut(s)	45, 582
BspT107I	GGYRCC	1 cut(s)	513
BspTNI	GGTCTC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	37, 574
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	183
Bst6I	CTCTTC	1 cut(s)	164
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	225
BstF5I	GGATG	3 cut(s)	28, 378, 391
BstH2I	RGCGCY	2 cut(s)	138, 407
BstHHI	GCGC	2 cut(s)	137, 406
BstKTI	GATC	2 cut(s)	40, 577
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	2 cut(s)	37, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 560, 569
BstSCI	CCNGG	2 cut(s)	216, 381
BstV1I	GCAGC	2 cut(s)	541, 563
BstV2I	GAAGAC	1 cut(s)	131
BsuI	GTATCC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	522
BtsCI	GGATG	3 cut(s)	28, 378, 391
Cac8I	GCNNGC	1 cut(s)	225
CfoI	GCGC	2 cut(s)	137, 406
CseI	GACGC	1 cut(s)	91
CviAII	CATG	1 cut(s)	636
DpnI	GATC	2 cut(s)	39, 576
DpnII	GATC	2 cut(s)	37, 574
DraI	TTTAAA	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	156
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	183
Eco147I	AGGCCT	1 cut(s)	255
Eco24I	GRGCYC	2 cut(s)	15, 225
Eco31I	GGTCTC	1 cut(s)	38
Eco47III	AGCGCT	1 cut(s)	405
Eco53kI	GAGCTC	1 cut(s)	13
Eco88I	CYCGRG	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	183
EcoT38I	GRGCYC	2 cut(s)	15, 225
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	639
FaiI	YATR	4 cut(s)	269, 271, 587, 637
FatI	CATG	1 cut(s)	635
FauI	CCCGC	1 cut(s)	232
FauNDI	CATATG	1 cut(s)	269
Fnu4HI	GCNGC	3 cut(s)	170, 552, 555
FokI	GGATG	3 cut(s)	15, 365, 398
FriOI	GRGCYC	2 cut(s)	15, 225
Fsp4HI	GCNGC	3 cut(s)	170, 552, 555
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	2 cut(s)	136, 405
GluI	GCNGC	3 cut(s)	170, 552, 555
HaeII	RGCGCY	2 cut(s)	138, 407
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	6 cut(s)	32, 90, 132, 218, 281, 383
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	2 cut(s)	137, 406
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	639
Hin6I	GCGC	2 cut(s)	135, 404
HinP1I	GCGC	2 cut(s)	135, 404
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	6 cut(s)	32, 90, 132, 218, 281, 383
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	2 cut(s)	376, 455
Hpy188I	TCNGA	1 cut(s)	579
Hpy188III	TCNNGA	4 cut(s)	32, 41, 281, 293
Hpy8I	GTNNAC	2 cut(s)	376, 455
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	3 cut(s)	247, 266, 347
HpyCH4IV	ACGT	1 cut(s)	521
HpyCH4V	TGCA	3 cut(s)	69, 505, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 560, 569
HpySE526I	ACGT	1 cut(s)	521
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	639
HspAI	GCGC	2 cut(s)	135, 404
Kpn2I	TCCGGA	2 cut(s)	31, 280
Kzo9I	GATC	2 cut(s)	37, 574
LmnI	GCTCC	4 cut(s)	220, 266, 283, 364
Lsp1109I	GCAGC	2 cut(s)	541, 563
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	521
MalI	GATC	2 cut(s)	39, 576
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	2 cut(s)	37, 574
MboII	GAAGA	4 cut(s)	14, 133, 136, 151
MhlI	GDGCHC	2 cut(s)	15, 225
MluCI	AATT	3 cut(s)	348, 444, 500
MmeI	TCCRAC	1 cut(s)	345
MroI	TCCGGA	2 cut(s)	31, 280
MseI	TTAA	3 cut(s)	314, 330, 443
MslI	CAYNNNNRTG	1 cut(s)	634
MspA1I	CMGCKG	2 cut(s)	544, 554
MspI	CCGG	6 cut(s)	32, 90, 132, 218, 281, 383
MspR9I	CCNGG	2 cut(s)	218, 383
MwoI	GCNNNNNNNGC	3 cut(s)	66, 560, 569
NciI	CCSGG	2 cut(s)	218, 383
NdeI	CATATG	1 cut(s)	269
NdeII	GATC	2 cut(s)	37, 574
NlaIII	CATG	1 cut(s)	639
NlaIV	GGNNCC	4 cut(s)	222, 285, 366, 515
PaeR7I	CTCGAG	1 cut(s)	8
PceI	AGGCCT	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	430
PfoI	TCCNGGA	2 cut(s)	216, 381
PkrI	GCNGC	3 cut(s)	171, 553, 556
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	4 cut(s)	222, 285, 366, 515
PspXI	VCTCGAGB	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	554
RseI	CAYNNNNRTG	1 cut(s)	634
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	3 cut(s)	314, 330, 443
SatI	GCNGC	3 cut(s)	170, 552, 555
Sau3AI	GATC	2 cut(s)	37, 574
ScrFI	CCNGG	2 cut(s)	218, 383
SduI	GDGCHC	2 cut(s)	15, 225
SfaNI	GCATC	1 cut(s)	475
Sfr274I	CTCGAG	1 cut(s)	8
SlaI	CTCGAG	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	634
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	3 cut(s)	348, 444, 500
SseBI	AGGCCT	1 cut(s)	255
SsiI	CCGC	6 cut(s)	96, 167, 170, 225, 544, 572
SspMI	CTAG	1 cut(s)	251
SstI	GAGCTC	1 cut(s)	15
StuI	AGGCCT	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	216, 381
StyI	CCWWGG	1 cut(s)	183
TaiI	ACGT	1 cut(s)	524
TaqI	TCGA	5 cut(s)	9, 78, 189, 420, 469
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	3 cut(s)	348, 444, 500
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	3 cut(s)	314, 330, 443
Tru9I	TTAA	3 cut(s)	314, 330, 443
TseI	GCWGC	2 cut(s)	551, 554
TspDTI	ATGAA	5 cut(s)	14, 17, 151, 437, 624
TspGWI	ACGGA	2 cut(s)	320, 386
XhoI	CTCGAG	1 cut(s)	8
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.