Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009937

Physical Location & Seq

Genomic Coordinates Forward (+)

71400466 .. 71403175

Gene Structure 2710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAAACTGGAGCTCGATCACGTTACCGACGAGATGTGCCGCACAATCGAAGTCGTCGAAGGCGTCCACCCCTCTCTGGCCGCCGCCGCCGCGTTCGACGGAGAGTGCGCCGATGATCTCTTCATTCCCCCGCTCAACTTCGCCATGGTCGATAACGGCATTTTCCGGTCCGGCTTCCCTGACTCCAACAACTTCTCCTTCCTCCAAACCCTAGGCCTCCGCTCCATTATATGTCTGTGTCCGGAGCCGTATCCAGAGACGAACGTGGAGTTCCTCAAGTCGAACGGGATCAAGCTCTTTCAATTTGGGATCGAAGGCCATAAGGAGCCTTTTATAAACATCCCAGAGGATACAATCCGTGAAGCACTAAAAGTTGTCCTTGATGTAAGGAATCACCCCATCTTAATTCATTGCAAACGAGGGAAGCATCGAACTGGTTGTCTGGTGGGATGCTTGAGAAAACTGCAGAGATGGTGCCTGTCATCCGTTTTTGATGAGTACCAGCGTTTTGCAGCCGCCAAAGCCAGAGTTGCTGATCAAAGGTTTATGGAGATGTTTGATGTTTCTAGTTTGAAACATTTACCGATGCCATTTTCATGTTCGAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0031347 GO:0032101 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0071704 GO:0080134 GO:0140096 GO:1900150 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

204

Amino Acids

23.02

Weight (kDa)

6.38

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	42 - 193	3.3e-64	Tyrosine phosphatase family
PTP-NADK	PF22741	67 - 178	9.7e-08	DSP-PTPase phosphatase fused to NAD+ Kinase
Y_phosphatase3	PF13350	116 - 172	2.7e-06	Tyrosine phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05000 AT1G05000 AT1G05000
fragaria_vesca	FvH4_6g42080
malus_domestica	MD09G1115000.v1.1 MD09G1115100.v1.1 MD17G1106400.v1.1
prunus_persica	Prupe.3G209500_v2.0.a1 Prupe.3G209500_v2.0.a1
pyrus_communis	pycom09g03930 pycom17g09930
rosa_chinensis	RchiOBHm_Chr2g0158001
rosa_laevigata	RLG00000021047
rosa_multiflora	Rmu_sc0000419.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091760
rosa_rugosa	Rorug02G0465100 Rorug02G0465200
rosa_samantha	Rh2AG531000 Rh2BG545500 Rh2DG553600
rosa_wichuraiana	Rw2G043910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	474
AccBSI	CCGCTC	2 cut(s)	133, 222
AccII	CGCG	1 cut(s)	92
AccIII	TCCGGA	1 cut(s)	241
AciI	CCGC	8 cut(s)	40, 81, 84, 87, 90, 131, 220, 516
AclWI	GGATC	2 cut(s)	296, 317
AcoI	YGGCCR	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	302, 574
AluBI	AGCT	2 cut(s)	13, 295
AluI	AGCT	2 cut(s)	13, 295
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	2 cut(s)	296, 317
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	3 cut(s)	78, 214, 316
ApeKI	GCWGC	1 cut(s)	512
ArsI	GACNNNNNNTTYG	2 cut(s)	424, 456
AspA2I	CCTAGG	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	386
AsuII	TTCGAA	1 cut(s)	602
AvaII	GGWCC	1 cut(s)	168
AvrII	CCTAGG	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	474
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	524
BccI	CCATC	2 cut(s)	407, 465
BceAI	ACGGC	2 cut(s)	172, 232
BciVI	GTATCC	2 cut(s)	261, 343
BclI	TGATCA	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	2 cut(s)	212, 567
BfmI	CTRYAG	1 cut(s)	464
BfuI	GTATCC	2 cut(s)	261, 343
BisI	GCNGC	7 cut(s)	40, 81, 84, 87, 90, 513, 516
BlnI	CCTAGG	1 cut(s)	211
BlsI	GCNGC	7 cut(s)	41, 82, 85, 88, 91, 514, 517
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	3 cut(s)	246, 327, 476
BmsI	GCATC	3 cut(s)	436, 440, 576
BpmI	CTGGAG	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	602
BpuEI	CTTGAG	2 cut(s)	260, 475
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	144, 211
BsaWI	WCCGGW	2 cut(s)	165, 241
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	12, 439
Bse3DI	GCAATG	1 cut(s)	409
BseAI	TCCGGA	1 cut(s)	241
BseDI	CCNNGG	2 cut(s)	144, 211
BseGI	GGATG	3 cut(s)	339, 455, 482
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	409
BseNI	ACTGG	2 cut(s)	12, 439
BseXI	GCAGC	1 cut(s)	524
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	3 cut(s)	80, 216, 318
BshNI	GGYRCC	1 cut(s)	474
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	3 cut(s)	166, 171, 242
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	251
BsmBI	CGTCTC	1 cut(s)	251
BsnI	GGCC	3 cut(s)	80, 216, 318
Bsp119I	TTCGAA	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	241
Bsp143I	GATC	5 cut(s)	16, 115, 288, 309, 535
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	8 cut(s)	40, 81, 84, 87, 90, 131, 220, 516
BspANI	GGCC	3 cut(s)	80, 216, 318
BspEI	TCCGGA	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	3 cut(s)	246, 327, 476
BspMAI	CTGCAG	1 cut(s)	468
BspPI	GGATC	2 cut(s)	296, 317
BspT104I	TTCGAA	1 cut(s)	602
BspT107I	GGYRCC	1 cut(s)	474
BsrBI	CCGCTC	2 cut(s)	133, 222
BsrDI	GCAATG	1 cut(s)	409
BsrI	ACTGG	2 cut(s)	12, 439
BssECI	CCNNGG	2 cut(s)	144, 211
BssMI	GATC	5 cut(s)	16, 115, 288, 309, 535
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	2 cut(s)	144, 211
Bst6I	CTCTTC	2 cut(s)	125, 599
BstACI	GRCGYC	1 cut(s)	63
BstBI	TTCGAA	1 cut(s)	602
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	339, 455, 482
BstFNI	CGCG	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	5 cut(s)	19, 118, 291, 312, 538
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	5 cut(s)	16, 115, 288, 309, 535
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 89, 521, 530
BstSFI	CTRYAG	1 cut(s)	464
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	524
BsuI	GTATCC	2 cut(s)	261, 343
BsuRI	GGCC	3 cut(s)	80, 216, 318
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	3 cut(s)	339, 455, 482
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	168
CpoI	CGGWCCG	1 cut(s)	168
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	499
CspI	CGGWCCG	1 cut(s)	168
CviAII	CATG	2 cut(s)	145, 597
CviQI	GTAC	1 cut(s)	499
DpnI	GATC	5 cut(s)	18, 117, 290, 311, 537
DpnII	GATC	5 cut(s)	16, 115, 288, 309, 535
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	125, 599
EarI	CTCTTC	2 cut(s)	125, 599
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	2 cut(s)	144, 211
Eco147I	AGGCCT	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoT14I	CCWWGG	2 cut(s)	144, 211
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	2 cut(s)	144, 211
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	2 cut(s)	148, 600
FaiI	YATR	7 cut(s)	146, 230, 232, 321, 335, 548, 598
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FatI	CATG	2 cut(s)	144, 596
FauI	CCCGC	1 cut(s)	138
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	7 cut(s)	40, 81, 84, 87, 90, 513, 516
FokI	GGATG	3 cut(s)	326, 462, 469
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	7 cut(s)	40, 81, 84, 87, 90, 513, 516
FspBI	CTAG	2 cut(s)	212, 567
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	7 cut(s)	40, 81, 84, 87, 90, 513, 516
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	3 cut(s)	80, 216, 318
HapII	CCGG	3 cut(s)	166, 171, 242
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	148, 600
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	2 cut(s)	182, 391
HpaII	CCGG	3 cut(s)	166, 171, 242
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	242, 254
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	3 cut(s)	32, 59, 101
HpyAV	CCTTC	3 cut(s)	53, 208, 308
HpyCH4IV	ACGT	2 cut(s)	21, 264
HpyCH4V	TGCA	3 cut(s)	414, 466, 512
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 89, 521, 530
HpySE526I	ACGT	2 cut(s)	21, 264
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	148, 600
HspAI	GCGC	1 cut(s)	108
Kpn2I	TCCGGA	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	5 cut(s)	16, 115, 288, 309, 535
LmnI	GCTCC	4 cut(s)	10, 227, 244, 325
Lsp1109I	GCAGC	1 cut(s)	524
LweI	GCATC	3 cut(s)	436, 440, 576
MaeI	CTAG	2 cut(s)	212, 567
MaeII	ACGT	2 cut(s)	21, 264
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	5 cut(s)	18, 117, 290, 311, 537
MbiI	CCGCTC	2 cut(s)	133, 222
MboI	GATC	5 cut(s)	16, 115, 288, 309, 535
MboII	GAAGA	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	2 cut(s)	302, 405
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	7 cut(s)	82, 212, 227, 284, 340, 413, 600
MroI	TCCGGA	1 cut(s)	241
MseI	TTAA	1 cut(s)	404
MslI	CAYNNNNRTG	1 cut(s)	595
MspI	CCGG	3 cut(s)	166, 171, 242
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	4 cut(s)	86, 89, 521, 530
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	5 cut(s)	16, 115, 288, 309, 535
NlaIII	CATG	2 cut(s)	148, 600
NlaIV	GGNNCC	3 cut(s)	246, 327, 476
NspV	TTCGAA	1 cut(s)	602
PceI	AGGCCT	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	4 cut(s)	27, 54, 60, 147
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	7 cut(s)	41, 82, 85, 88, 91, 514, 517
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PsiI	TTATAA	1 cut(s)	335
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	246, 327, 476
PspPI	GGNCC	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	468
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	1 cut(s)	595
Rsr2I	CGGWCCG	1 cut(s)	168
RsrII	CGGWCCG	1 cut(s)	168
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	7 cut(s)	40, 81, 84, 87, 90, 513, 516
Sau3AI	GATC	5 cut(s)	16, 115, 288, 309, 535
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	6 cut(s)	15, 24, 267, 297, 545, 611
SfaNI	GCATC	3 cut(s)	436, 440, 576
SfcI	CTRYAG	1 cut(s)	464
SfuI	TTCGAA	1 cut(s)	602
SinI	GGWCC	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	595
SmlI	CTYRAG	2 cut(s)	275, 454
SmoI	CTYRAG	2 cut(s)	275, 454
Sse9I	AATT	2 cut(s)	302, 405
SseBI	AGGCCT	1 cut(s)	216
SsiI	CCGC	8 cut(s)	40, 81, 84, 87, 90, 131, 220, 516
SspMI	CTAG	2 cut(s)	212, 567
SstI	GAGCTC	1 cut(s)	15
StuI	AGGCCT	1 cut(s)	216
StyI	CCWWGG	2 cut(s)	144, 211
TaiI	ACGT	2 cut(s)	24, 267
TaqI	TCGA	9 cut(s)	15, 48, 57, 96, 150, 281, 312, 430, 602
TasI	AATT	2 cut(s)	302, 405
TauI	GCSGC	6 cut(s)	42, 83, 86, 89, 92, 518
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TseI	GCWGC	1 cut(s)	512
TspDTI	ATGAA	4 cut(s)	17, 112, 398, 585
TspGWI	ACGGA	3 cut(s)	114, 347, 475
VpaK11BI	GGWCC	1 cut(s)	168
XmaJI	CCTAGG	1 cut(s)	211
XspI	CTAG	2 cut(s)	212, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.