Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009937

Physical Location & Seq

Genomic Coordinates Forward (+)

75344944 .. 75347935

Gene Structure 2992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG545500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAAACTTGAGCTCGATCACGTTACCGACGAGATGTGCCGCACAATCGAAGTCGTCGGAGGCGTCCACCCCTCTCCGGCCGCCGCCGCCGCCGCGTCTGACGGAGAGTGCGCCGATGATCTCTTCATTCCTCCGCTCAACTTCGCCATGGTCGATAACGGCATTTTCCGGTCCGGCTTCCCTGACTCCAACAACTTGTCCTTCCTCCAAACCCTTGGCCTCCGCTCCATTATATGTCTGTGTCCGGAGCCGTATCCAGAGACGAACGTGGAGTTCCTCAAGTCGAACGGGATCAAGCTCTTTCAATTTGGGATCGAAGGCTATAAGGAGCCTTTTATAAACATCCCAGAGGATACGATCCGTGAAGCACTAAAAGTTGTCCTTGATGTAAGGAATCACCCCATCTTAATTCATTGCAAACGAGGGAAGCATCGAACTGGGTGTCTGGTGGGATGCTTAAGAAAACTGCAGAGATGGTGCCTGTCATCCGTTTTTGATGAGTACCAGCGTTTTGCAGCCGCCAAAGCCAGAGTTGCTGATCAAAGGTTTATGGAGATGTTTGATGTTTCTAGTTTGAAACATTTACCGATGCCATTTTCATGTTCGAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0031347 GO:0032101 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0071704 GO:0080134 GO:0140096 GO:1900150 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

204

Amino Acids

22.94

Weight (kDa)

6.59

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	43 - 194	6.1e-63	Tyrosine phosphatase family
PTP-NADK	PF22741	56 - 179	7.6e-08	DSP-PTPase phosphatase fused to NAD+ Kinase
PTP-SAK	PF22784	65 - 153	2.8e-06	Swiss Army Knife protein, DSP-PTPase phosphatase domain
Y_phosphatase3	PF13350	116 - 172	2e-06	Tyrosine phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05000 AT1G05000 AT1G05000
fragaria_vesca	FvH4_6g42080
malus_domestica	MD09G1115000.v1.1 MD09G1115100.v1.1 MD17G1106400.v1.1
prunus_persica	Prupe.3G209500_v2.0.a1 Prupe.3G209500_v2.0.a1
pyrus_communis	pycom09g03930 pycom17g09930
rosa_chinensis	RchiOBHm_Chr2g0158001
rosa_laevigata	RLG00000021047
rosa_multiflora	Rmu_sc0000419.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091760
rosa_rugosa	Rorug02G0465100 Rorug02G0465200
rosa_samantha	Rh2AG531000 Rh2BG545500 Rh2DG553600
rosa_wichuraiana	Rw2G043910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
AccB1I	GGYRCC	1 cut(s)	477
AccBSI	CCGCTC	2 cut(s)	136, 225
AccII	CGCG	1 cut(s)	95
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	9 cut(s)	40, 81, 84, 87, 90, 93, 134, 223, 519
AclWI	GGATC	3 cut(s)	299, 320, 352
AcoI	YGGCCR	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflII	CTTAAG	1 cut(s)	457
AgsI	TTSAA	2 cut(s)	305, 577
AluBI	AGCT	2 cut(s)	13, 298
AluI	AGCT	2 cut(s)	13, 298
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	3 cut(s)	299, 320, 352
Aor13HI	TCCGGA	1 cut(s)	244
AoxI	GGCC	2 cut(s)	78, 217
ApeKI	GCWGC	1 cut(s)	515
ArsI	GACNNNNNNTTYG	2 cut(s)	427, 459
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	389
AsuII	TTCGAA	1 cut(s)	605
AvaII	GGWCC	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	2 cut(s)	410, 468
BceAI	ACGGC	2 cut(s)	175, 235
BciVI	GTATCC	2 cut(s)	264, 346
BclI	TGATCA	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	570
BfmI	CTRYAG	1 cut(s)	467
BfrI	CTTAAG	1 cut(s)	457
BfuI	GTATCC	2 cut(s)	264, 346
BisI	GCNGC	8 cut(s)	40, 81, 84, 87, 90, 93, 516, 519
BlsI	GCNGC	8 cut(s)	41, 82, 85, 88, 91, 94, 517, 520
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	3 cut(s)	249, 330, 479
BmrI	ACTGGG	1 cut(s)	447
BmsI	GCATC	3 cut(s)	439, 443, 579
BmuI	ACTGGG	1 cut(s)	447
Bpu14I	TTCGAA	1 cut(s)	605
BpuEI	CTTGAG	2 cut(s)	29, 263
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	147, 214
BsaWI	WCCGGW	2 cut(s)	168, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	442
Bse3DI	GCAATG	1 cut(s)	412
BseAI	TCCGGA	1 cut(s)	244
BseDI	CCNNGG	2 cut(s)	147, 214
BseGI	GGATG	3 cut(s)	342, 458, 485
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	412
BseNI	ACTGG	1 cut(s)	442
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	527
Bsh1236I	CGCG	1 cut(s)	95
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	80, 219
BshNI	GGYRCC	1 cut(s)	477
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	4 cut(s)	77, 169, 174, 245
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	254
BsmBI	CGTCTC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	80, 219
Bsp119I	TTCGAA	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	244
Bsp143I	GATC	6 cut(s)	16, 118, 291, 312, 357, 538
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	9 cut(s)	40, 81, 84, 87, 90, 93, 134, 223, 519
BspANI	GGCC	2 cut(s)	80, 219
BspEI	TCCGGA	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	3 cut(s)	249, 330, 479
BspMAI	CTGCAG	1 cut(s)	471
BspPI	GGATC	3 cut(s)	299, 320, 352
BspT104I	TTCGAA	1 cut(s)	605
BspT107I	GGYRCC	1 cut(s)	477
BspTI	CTTAAG	1 cut(s)	457
BsrBI	CCGCTC	2 cut(s)	136, 225
BsrDI	GCAATG	1 cut(s)	412
BsrI	ACTGG	1 cut(s)	442
BssECI	CCNNGG	2 cut(s)	147, 214
BssMI	GATC	6 cut(s)	16, 118, 291, 312, 357, 538
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	2 cut(s)	147, 214
Bst6I	CTCTTC	2 cut(s)	128, 602
BstACI	GRCGYC	1 cut(s)	63
BstAFI	CTTAAG	1 cut(s)	457
BstBI	TTCGAA	1 cut(s)	605
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	3 cut(s)	342, 458, 485
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	6 cut(s)	19, 121, 294, 315, 360, 541
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	6 cut(s)	16, 118, 291, 312, 357, 538
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 89, 92, 524, 533
BstSFI	CTRYAG	1 cut(s)	467
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	527
BstXI	CCANNNNNNTGG	1 cut(s)	215
BstZI	CGGCCG	1 cut(s)	78
BsuI	GTATCC	2 cut(s)	264, 346
BsuRI	GGCC	2 cut(s)	80, 219
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	3 cut(s)	342, 458, 485
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	171
CpoI	CGGWCCG	1 cut(s)	171
CseI	GACGC	2 cut(s)	52, 84
Csp6I	GTAC	1 cut(s)	502
CspI	CGGWCCG	1 cut(s)	171
CviAII	CATG	2 cut(s)	148, 600
CviQI	GTAC	1 cut(s)	502
DpnI	GATC	6 cut(s)	18, 120, 293, 314, 359, 540
DpnII	GATC	6 cut(s)	16, 118, 291, 312, 357, 538
EaeI	YGGCCR	1 cut(s)	78
EagI	CGGCCG	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	128, 602
EarI	CTCTTC	2 cut(s)	128, 602
Ecl136II	GAGCTC	1 cut(s)	13
EclXI	CGGCCG	1 cut(s)	78
Eco130I	CCWWGG	2 cut(s)	147, 214
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	171
Eco52I	CGGCCG	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoT14I	CCWWGG	2 cut(s)	147, 214
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	2 cut(s)	147, 214
Esp3I	CGTCTC	1 cut(s)	254
FaeI	CATG	2 cut(s)	151, 603
FaiI	YATR	7 cut(s)	149, 233, 235, 324, 338, 551, 601
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FatI	CATG	2 cut(s)	147, 599
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	8 cut(s)	40, 81, 84, 87, 90, 93, 516, 519
FokI	GGATG	3 cut(s)	329, 465, 472
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	8 cut(s)	40, 81, 84, 87, 90, 93, 516, 519
FspBI	CTAG	1 cut(s)	570
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	8 cut(s)	40, 81, 84, 87, 90, 93, 516, 519
HaeIII	GGCC	2 cut(s)	80, 219
HapII	CCGG	4 cut(s)	77, 169, 174, 245
HgaI	GACGC	2 cut(s)	52, 84
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	151, 603
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	2 cut(s)	185, 394
HpaII	CCGG	4 cut(s)	77, 169, 174, 245
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	59, 100
Hpy188III	TCNNGA	2 cut(s)	245, 257
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	2 cut(s)	32, 59
HpyAV	CCTTC	2 cut(s)	211, 311
HpyCH4IV	ACGT	2 cut(s)	21, 267
HpyCH4V	TGCA	3 cut(s)	417, 469, 515
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 89, 92, 524, 533
HpySE526I	ACGT	2 cut(s)	21, 267
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	151, 603
HspAI	GCGC	1 cut(s)	111
Kpn2I	TCCGGA	1 cut(s)	244
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	6 cut(s)	16, 118, 291, 312, 357, 538
LmnI	GCTCC	3 cut(s)	230, 247, 328
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	3 cut(s)	439, 443, 579
MaeI	CTAG	1 cut(s)	570
MaeII	ACGT	2 cut(s)	21, 267
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	6 cut(s)	18, 120, 293, 314, 359, 540
MbiI	CCGCTC	2 cut(s)	136, 225
MboI	GATC	6 cut(s)	16, 118, 291, 312, 357, 538
MboII	GAAGA	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	2 cut(s)	305, 408
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	2 cut(s)	37, 213
MnlI	CCTC	9 cut(s)	53, 82, 141, 215, 230, 287, 343, 416, 603
MroI	TCCGGA	1 cut(s)	244
MseI	TTAA	2 cut(s)	407, 458
MslI	CAYNNNNRTG	1 cut(s)	598
MspCI	CTTAAG	1 cut(s)	457
MspI	CCGG	4 cut(s)	77, 169, 174, 245
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	5 cut(s)	86, 89, 92, 524, 533
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	6 cut(s)	16, 118, 291, 312, 357, 538
NlaIII	CATG	2 cut(s)	151, 603
NlaIV	GGNNCC	3 cut(s)	249, 330, 479
NspV	TTCGAA	1 cut(s)	605
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 60, 150
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	8 cut(s)	41, 82, 85, 88, 91, 94, 517, 520
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PsiI	TTATAA	1 cut(s)	338
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	249, 330, 479
PspPI	GGNCC	1 cut(s)	171
PstI	CTGCAG	1 cut(s)	471
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
RseI	CAYNNNNRTG	1 cut(s)	598
Rsr2I	CGGWCCG	1 cut(s)	171
RsrII	CGGWCCG	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	407, 458
SatI	GCNGC	8 cut(s)	40, 81, 84, 87, 90, 93, 516, 519
Sau3AI	GATC	6 cut(s)	16, 118, 291, 312, 357, 538
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	6 cut(s)	15, 24, 270, 300, 548, 614
SfaNI	GCATC	3 cut(s)	439, 443, 579
SfcI	CTRYAG	1 cut(s)	467
SfuI	TTCGAA	1 cut(s)	605
SinI	GGWCC	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	598
SmlI	CTYRAG	3 cut(s)	8, 278, 457
SmoI	CTYRAG	3 cut(s)	8, 278, 457
Sse9I	AATT	2 cut(s)	305, 408
SsiI	CCGC	9 cut(s)	40, 81, 84, 87, 90, 93, 134, 223, 519
SspMI	CTAG	1 cut(s)	570
SstI	GAGCTC	1 cut(s)	15
StyI	CCWWGG	2 cut(s)	147, 214
TaiI	ACGT	2 cut(s)	24, 270
TaqI	TCGA	7 cut(s)	15, 48, 153, 284, 315, 433, 605
TasI	AATT	2 cut(s)	305, 408
TauI	GCSGC	7 cut(s)	42, 83, 86, 89, 92, 95, 521
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	2 cut(s)	407, 458
Tru9I	TTAA	2 cut(s)	407, 458
TseI	GCWGC	1 cut(s)	515
TspDTI	ATGAA	4 cut(s)	17, 115, 401, 588
TspGWI	ACGGA	3 cut(s)	117, 350, 478
Vha464I	CTTAAG	1 cut(s)	457
VpaK11BI	GGWCC	1 cut(s)	171
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.