Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009937

Physical Location & Seq

Genomic Coordinates Forward (+)

32929986 .. 32933652

Gene Structure 3667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g42080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAAACTGGAGCTCCATCACGAAACCGACGAGATGTGCCGCACAATCCAAGTCGTCGGAGACGTCCTCCACCTCTCCCCGTCCGTCGCCTCCGCCGCCGCCGCTGACGGAGGAGAAGAGTGCGCCGATGATCTCTTCATGCCTCCGCTCAACTTCGCCATGGTCGATAACGGCATTTTCCGGTCCGGCTTCCCCGACTCCAGCAACTTCTCCTTCCTCCAAACCCTAGGCCTCCGCTCCATCATATGTCTGTGTCCGGAGCCGTATCCAGAGACGAACGTGGAGTTCCTTAAGTCGAATGGGATTAAGCTTTTTCAATTTGGGATCGAAGGCTATAAGGAGCCTTTTGTAAACATCCCGGAGGATACAATCCGTGAAGCACTAAAAGTTGTCCTTGATGTAAGGAATCACCCGATCTTAATTCATTGCAAAAGAGGGAAGCATCGAACTGGTTGTGTGGTTGGATGCTTGAGAAAACTGCAGAGGTGGTGCCTCTCATCTGTTTTTGATGAGTACCAGCGTTTTGCAGCTGCCAAAGCCAGAATTGCAGATCAGAGGTTTATGGAGATGTTTGATGTTTCTAGTTTGAAACATGTACCAATGCCATTTTCATGTTCGAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0031347 GO:0032101 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0071704 GO:0080134 GO:0140096 GO:1900150 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

209

Amino Acids

23.47

Weight (kDa)

6.38

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	47 - 198	3.6e-64	Tyrosine phosphatase family
PTP-SAK	PF22784	71 - 158	2.8e-06	Swiss Army Knife protein, DSP-PTPase phosphatase domain
PTP-NADK	PF22741	97 - 187	2.6e-07	DSP-PTPase phosphatase fused to NAD+ Kinase
Y_phosphatase3	PF13350	117 - 178	1.2e-06	Tyrosine phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05000 AT1G05000 AT1G05000
fragaria_vesca	FvH4_6g42080
malus_domestica	MD09G1115000.v1.1 MD09G1115100.v1.1 MD17G1106400.v1.1
prunus_persica	Prupe.3G209500_v2.0.a1 Prupe.3G209500_v2.0.a1
pyrus_communis	pycom09g03930 pycom17g09930
rosa_chinensis	RchiOBHm_Chr2g0158001
rosa_laevigata	RLG00000021047
rosa_multiflora	Rmu_sc0000419.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091760
rosa_rugosa	Rorug02G0465100 Rorug02G0465200
rosa_samantha	Rh2AG531000 Rh2BG545500 Rh2DG553600
rosa_wichuraiana	Rw2G043910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	66
AccB1I	GGYRCC	1 cut(s)	489
AccBSI	CCGCTC	2 cut(s)	148, 237
AccIII	TCCGGA	1 cut(s)	256
AciI	CCGC	7 cut(s)	40, 93, 96, 99, 102, 146, 235
AclWI	GGATC	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	2 cut(s)	515, 597
AflII	CTTAAG	1 cut(s)	290
AflIII	ACRYGT	1 cut(s)	592
AgsI	TTSAA	2 cut(s)	317, 589
AjuI	GAANNNNNNNTTGG	2 cut(s)	592, 624
AluBI	AGCT	3 cut(s)	13, 310, 530
AluI	AGCT	3 cut(s)	13, 310, 530
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	2 cut(s)	54, 266
AlwI	GGATC	1 cut(s)	332
Aor13HI	TCCGGA	1 cut(s)	256
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	527, 530
AspA2I	CCTAGG	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	183
AsuC2I	CCSGG	1 cut(s)	359
AsuHPI	GGTGA	1 cut(s)	401
AsuII	TTCGAA	1 cut(s)	617
AvaII	GGWCC	1 cut(s)	183
AvrII	CCTAGG	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	489
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	517, 539
BccI	CCATC	2 cut(s)	24, 248
BceAI	ACGGC	2 cut(s)	187, 247
BciVI	GTATCC	2 cut(s)	276, 358
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	54, 266
BfaI	CTAG	2 cut(s)	227, 582
BfmI	CTRYAG	1 cut(s)	479
BfrI	CTTAAG	1 cut(s)	290
BfuI	GTATCC	2 cut(s)	276, 358
BisI	GCNGC	6 cut(s)	40, 96, 99, 102, 528, 531
BlnI	CCTAGG	1 cut(s)	226
BlsI	GCNGC	6 cut(s)	41, 97, 100, 103, 529, 532
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	3 cut(s)	261, 342, 491
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	2 cut(s)	451, 455
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
BpmI	CTGGAG	2 cut(s)	29, 184
Bpu14I	TTCGAA	1 cut(s)	617
BpuEI	CTTGAG	1 cut(s)	490
BpuMI	CCSGG	1 cut(s)	359
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	159, 226
BsaWI	WCCGGW	2 cut(s)	180, 256
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bse1I	ACTGG	2 cut(s)	12, 454
Bse3DI	GCAATG	1 cut(s)	424
BseAI	TCCGGA	1 cut(s)	256
BseDI	CCNNGG	2 cut(s)	159, 226
BseGI	GGATG	2 cut(s)	354, 470
BseMI	GCAATG	1 cut(s)	424
BseNI	ACTGG	2 cut(s)	12, 454
BseRI	GAGGAG	1 cut(s)	126
BseXI	GCAGC	2 cut(s)	517, 539
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	489
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	4 cut(s)	181, 186, 257, 359
BsmAI	GTCTC	2 cut(s)	54, 266
BsmBI	CGTCTC	2 cut(s)	54, 266
BsnI	GGCC	1 cut(s)	231
Bsp119I	TTCGAA	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	256
Bsp143I	GATC	4 cut(s)	130, 324, 414, 550
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	7 cut(s)	40, 93, 96, 99, 102, 146, 235
BspANI	GGCC	1 cut(s)	231
BspEI	TCCGGA	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	261, 342, 491
BspMAI	CTGCAG	1 cut(s)	483
BspPI	GGATC	1 cut(s)	332
BspT104I	TTCGAA	1 cut(s)	617
BspT107I	GGYRCC	1 cut(s)	489
BspTI	CTTAAG	1 cut(s)	290
BsrBI	CCGCTC	2 cut(s)	148, 237
BsrDI	GCAATG	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	12, 454
BssECI	CCNNGG	2 cut(s)	159, 226
BssMI	GATC	4 cut(s)	130, 324, 414, 550
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	2 cut(s)	159, 226
Bst6I	CTCTTC	3 cut(s)	111, 140, 614
BstACI	GRCGYC	1 cut(s)	63
BstAFI	CTTAAG	1 cut(s)	290
BstBI	TTCGAA	1 cut(s)	617
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	354, 470
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	4 cut(s)	133, 327, 417, 553
BstMAI	GTCTC	2 cut(s)	54, 266
BstMBI	GATC	4 cut(s)	130, 324, 414, 550
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 101, 536, 545
BstNSI	RCATGY	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	479
BstV1I	GCAGC	2 cut(s)	517, 539
BsuI	GTATCC	2 cut(s)	276, 358
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	354, 470
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	183
CpoI	CGGWCCG	1 cut(s)	183
Csp6I	GTAC	2 cut(s)	514, 596
CspI	CGGWCCG	1 cut(s)	183
CviAII	CATG	4 cut(s)	139, 160, 593, 612
CviJI	RGCY	9 cut(s)	13, 189, 231, 262, 310, 333, 343, 530, 539
CviKI_1	RGCY	9 cut(s)	13, 189, 231, 262, 310, 333, 343, 530, 539
CviQI	GTAC	2 cut(s)	514, 596
DpnI	GATC	4 cut(s)	132, 326, 416, 552
DpnII	GATC	4 cut(s)	130, 324, 414, 550
Eam1104I	CTCTTC	3 cut(s)	111, 140, 614
EarI	CTCTTC	3 cut(s)	111, 140, 614
EciI	GGCGGA	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	2 cut(s)	159, 226
Eco147I	AGGCCT	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoT14I	CCWWGG	2 cut(s)	159, 226
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	2 cut(s)	159, 226
Esp3I	CGTCTC	2 cut(s)	54, 266
FaeI	CATG	4 cut(s)	142, 163, 596, 615
FaiI	YATR	8 cut(s)	140, 161, 245, 247, 336, 563, 594, 613
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FatI	CATG	4 cut(s)	138, 159, 592, 611
FauNDI	CATATG	1 cut(s)	245
Fnu4HI	GCNGC	6 cut(s)	40, 96, 99, 102, 528, 531
FokI	GGATG	2 cut(s)	341, 477
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	6 cut(s)	40, 96, 99, 102, 528, 531
FspBI	CTAG	2 cut(s)	227, 582
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	6 cut(s)	40, 96, 99, 102, 528, 531
GsuI	CTGGAG	2 cut(s)	29, 184
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	4 cut(s)	181, 186, 257, 359
HhaI	GCGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	4 cut(s)	142, 163, 596, 615
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	2 cut(s)	197, 406
HpaII	CCGG	4 cut(s)	181, 186, 257, 359
HphI	GGTGA	1 cut(s)	401
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	2 cut(s)	59, 555
Hpy188III	TCNNGA	3 cut(s)	20, 257, 269
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	3 cut(s)	32, 59, 89
HpyAV	CCTTC	2 cut(s)	223, 323
HpyCH4IV	ACGT	2 cut(s)	63, 279
HpyCH4V	TGCA	4 cut(s)	429, 481, 527, 548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 101, 536, 545
HpySE526I	ACGT	2 cut(s)	63, 279
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	4 cut(s)	142, 163, 596, 615
HspAI	GCGC	1 cut(s)	123
Kpn2I	TCCGGA	1 cut(s)	256
Kzo9I	GATC	4 cut(s)	130, 324, 414, 550
LmnI	GCTCC	5 cut(s)	10, 18, 242, 259, 340
LpnPI	CCDG	9 cut(s)	194, 199, 214, 270, 282, 372, 435, 530, 553
Lsp1109I	GCAGC	2 cut(s)	517, 539
LweI	GCATC	2 cut(s)	451, 455
MaeI	CTAG	2 cut(s)	227, 582
MaeII	ACGT	2 cut(s)	63, 279
MalI	GATC	4 cut(s)	132, 326, 416, 552
MbiI	CCGCTC	2 cut(s)	148, 237
MboI	GATC	4 cut(s)	130, 324, 414, 550
MboII	GAAGA	2 cut(s)	127, 128
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	3 cut(s)	317, 420, 543
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	2 cut(s)	37, 442
MroI	TCCGGA	1 cut(s)	256
MseI	TTAA	3 cut(s)	291, 306, 419
MslI	CAYNNNNRTG	1 cut(s)	610
MspA1I	CMGCKG	2 cut(s)	104, 530
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	4 cut(s)	181, 186, 257, 359
MspR9I	CCNGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	4 cut(s)	95, 101, 536, 545
NciI	CCSGG	1 cut(s)	359
NcoI	CCATGG	1 cut(s)	159
NdeI	CATATG	1 cut(s)	245
NdeII	GATC	4 cut(s)	130, 324, 414, 550
NlaIII	CATG	4 cut(s)	142, 163, 596, 615
NlaIV	GGNNCC	3 cut(s)	261, 342, 491
NspI	RCATGY	1 cut(s)	596
NspV	TTCGAA	1 cut(s)	617
PceI	AGGCCT	1 cut(s)	231
PciI	ACATGT	1 cut(s)	592
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 60, 162
PfeI	GAWTC	1 cut(s)	406
PfoI	TCCNGGA	1 cut(s)	357
PkrI	GCNGC	6 cut(s)	41, 97, 100, 103, 529, 532
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PscI	ACATGT	1 cut(s)	592
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	261, 342, 491
PspPI	GGNCC	1 cut(s)	183
PstI	CTGCAG	1 cut(s)	483
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	2 cut(s)	515, 597
RsaNI	GTAC	2 cut(s)	514, 596
RseI	CAYNNNNRTG	1 cut(s)	610
Rsr2I	CGGWCCG	1 cut(s)	183
RsrII	CGGWCCG	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	3 cut(s)	291, 306, 419
SatI	GCNGC	6 cut(s)	40, 96, 99, 102, 528, 531
Sau3AI	GATC	4 cut(s)	130, 324, 414, 550
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	9 cut(s)	15, 66, 75, 282, 312, 488, 532, 560, 626
SfaNI	GCATC	2 cut(s)	451, 455
SfcI	CTRYAG	1 cut(s)	479
SfuI	TTCGAA	1 cut(s)	617
SinI	GGWCC	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	610
SmlI	CTYRAG	2 cut(s)	290, 469
SmoI	CTYRAG	2 cut(s)	290, 469
Sse9I	AATT	3 cut(s)	317, 420, 543
SseBI	AGGCCT	1 cut(s)	231
SsiI	CCGC	7 cut(s)	40, 93, 96, 99, 102, 146, 235
SspMI	CTAG	2 cut(s)	227, 582
SstI	GAGCTC	1 cut(s)	15
StuI	AGGCCT	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	2 cut(s)	159, 226
TaiI	ACGT	2 cut(s)	66, 282
TaqI	TCGA	5 cut(s)	165, 296, 327, 445, 617
TasI	AATT	3 cut(s)	317, 420, 543
TauI	GCSGC	4 cut(s)	42, 98, 101, 104
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	3 cut(s)	291, 306, 419
Tru9I	TTAA	3 cut(s)	291, 306, 419
TseI	GCWGC	2 cut(s)	527, 530
TspDTI	ATGAA	4 cut(s)	17, 127, 413, 600
TspGWI	ACGGA	3 cut(s)	73, 123, 362
Vha464I	CTTAAG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	183
XceI	RCATGY	1 cut(s)	596
XmaJI	CCTAGG	1 cut(s)	226
XspI	CTAG	2 cut(s)	227, 582
ZraI	GACGTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.