Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009937

Physical Location & Seq

Genomic Coordinates Forward (+)

75951207 .. 75956915

Gene Structure 5709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG531000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAAACTGGAGCTCGATCACGTTACCGACGAGATGTGCCGCACAATCGAAGTCGTCGGAGGCGTCCACCCCTCTCCGGCCTCCGCCGCCGCCGCCGCCGCGTCTGACGGAGAGTGCGCCGATGATCTCTTCATTCCTCCGCTCAACTTCGCCATGGTCGATAACGGCATTTTCCGGTCCGGCTTCCCTGACTCCAACAACTTGTCCTTCCTCCAAACCCTAGGCCTCCGCTCCATTATATGTCTGTGTCCGGAGCCGTATCCAGAGACGAACGTGGAGTTCCTCAAGTCGAACGGGATCAAGCTCTTTCAATTTGGGATCGAAGGCTATAAGGAGCCTTTTATAAACATCCCAGAGGATACGATCCGTGAAGCACTAAAAGTTGTCCTTGATGTAAGGAATCACCCCATCTTAATTCATTGCAAACGAGGGAAGGTATGCATACTGTTGGTTTCTTTTGTGTACTTATTTCTGATTTCAAGCAGTCCATTACATTTTCAGTATGGTTGCTTACTTCGATTTCATTTTCAGCATCGAACTGGTTGTCTGGTGGGATGCTTGAGAAAACTGCAGAGATGGTGCCTGTCATCCGTTTTTGATGAGTACCAGCGTTTTGCAGCCGCCAAAGCCAGAGTTGCTGATCAAAGGTTTATGGAGATGTTTGATGTTTCTAGTTTGAAACATTTACCCATGCCATTTTCATGTTCGAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0031347 GO:0032101 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0071704 GO:0080134 GO:0140096 GO:1900150 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

238

Amino Acids

26.87

Weight (kDa)

7.05

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	45 - 150	1e-36	Tyrosine phosphatase family
Y_phosphatase2	PF03162	176 - 228	1.4e-18	Tyrosine phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05000 AT1G05000 AT1G05000
fragaria_vesca	FvH4_6g42080
malus_domestica	MD09G1115000.v1.1 MD09G1115100.v1.1 MD17G1106400.v1.1
prunus_persica	Prupe.3G209500_v2.0.a1 Prupe.3G209500_v2.0.a1
pyrus_communis	pycom09g03930 pycom17g09930
rosa_chinensis	RchiOBHm_Chr2g0158001
rosa_laevigata	RLG00000021047
rosa_multiflora	Rmu_sc0000419.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091760
rosa_rugosa	Rorug02G0465100 Rorug02G0465200
rosa_samantha	Rh2AG531000 Rh2BG545500 Rh2DG553600
rosa_wichuraiana	Rw2G043910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	579
AccBSI	CCGCTC	2 cut(s)	142, 231
AccII	CGCG	1 cut(s)	101
AccIII	TCCGGA	1 cut(s)	250
AclWI	GGATC	3 cut(s)	305, 326, 358
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	2 cut(s)	464, 605
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	3 cut(s)	311, 480, 679
AluBI	AGCT	2 cut(s)	13, 304
AluI	AGCT	2 cut(s)	13, 304
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	3 cut(s)	305, 326, 358
Aor13HI	TCCGGA	1 cut(s)	250
AoxI	GGCC	2 cut(s)	78, 223
ApeKI	GCWGC	1 cut(s)	617
ArsI	GACNNNNNNTTYG	2 cut(s)	529, 561
AspA2I	CCTAGG	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	395
AsuII	TTCGAA	1 cut(s)	707
AvaII	GGWCC	1 cut(s)	177
AvrII	CCTAGG	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	579
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	629
BccI	CCATC	2 cut(s)	416, 570
BceAI	ACGGC	2 cut(s)	181, 241
BciVI	GTATCC	2 cut(s)	270, 352
BclI	TGATCA	1 cut(s)	640
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	2 cut(s)	221, 672
BfmI	CTRYAG	1 cut(s)	569
BfuI	GTATCC	2 cut(s)	270, 352
BisI	GCNGC	8 cut(s)	40, 87, 90, 93, 96, 99, 618, 621
BlnI	CCTAGG	1 cut(s)	220
BlsI	GCNGC	8 cut(s)	41, 88, 91, 94, 97, 100, 619, 622
Bme18I	GGWCC	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	3 cut(s)	255, 336, 581
BmsI	GCATC	2 cut(s)	541, 545
BpmI	CTGGAG	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	707
BpuEI	CTTGAG	2 cut(s)	269, 580
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	153, 220
BsaWI	WCCGGW	2 cut(s)	174, 250
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	12, 544
Bse3DI	GCAATG	1 cut(s)	418
BseAI	TCCGGA	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	153, 220
BseGI	GGATG	3 cut(s)	348, 560, 587
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	418
BseNI	ACTGG	2 cut(s)	12, 544
BseXI	GCAGC	1 cut(s)	629
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	2 cut(s)	80, 225
BshNI	GGYRCC	1 cut(s)	579
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	4 cut(s)	77, 175, 180, 251
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	260
BsmBI	CGTCTC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	80, 225
Bsp119I	TTCGAA	1 cut(s)	707
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	250
Bsp143I	GATC	6 cut(s)	16, 124, 297, 318, 363, 640
Bsp19I	CCATGG	1 cut(s)	153
BspANI	GGCC	2 cut(s)	80, 225
BspEI	TCCGGA	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	3 cut(s)	255, 336, 581
BspMAI	CTGCAG	1 cut(s)	573
BspPI	GGATC	3 cut(s)	305, 326, 358
BspT104I	TTCGAA	1 cut(s)	707
BspT107I	GGYRCC	1 cut(s)	579
BsrBI	CCGCTC	2 cut(s)	142, 231
BsrDI	GCAATG	1 cut(s)	418
BsrI	ACTGG	2 cut(s)	12, 544
BssECI	CCNNGG	2 cut(s)	153, 220
BssMI	GATC	6 cut(s)	16, 124, 297, 318, 363, 640
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	2 cut(s)	153, 220
Bst4CI	ACNGT	1 cut(s)	447
Bst6I	CTCTTC	2 cut(s)	134, 704
BstACI	GRCGYC	1 cut(s)	63
BstBI	TTCGAA	1 cut(s)	707
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	348, 560, 587
BstFNI	CGCG	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	6 cut(s)	19, 127, 300, 321, 366, 643
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	6 cut(s)	16, 124, 297, 318, 363, 640
BstMWI	GCNNNNNNNGC	6 cut(s)	86, 92, 95, 98, 626, 635
BstSFI	CTRYAG	1 cut(s)	569
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	629
BsuI	GTATCC	2 cut(s)	270, 352
BsuRI	GGCC	2 cut(s)	80, 225
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	348, 560, 587
CfoI	GCGC	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	177
CpoI	CGGWCCG	1 cut(s)	177
CseI	GACGC	2 cut(s)	52, 90
Csp6I	GTAC	2 cut(s)	463, 604
CspI	CGGWCCG	1 cut(s)	177
CviAII	CATG	3 cut(s)	154, 691, 702
CviQI	GTAC	2 cut(s)	463, 604
DpnI	GATC	6 cut(s)	18, 126, 299, 320, 365, 642
DpnII	GATC	6 cut(s)	16, 124, 297, 318, 363, 640
Eam1104I	CTCTTC	2 cut(s)	134, 704
EarI	CTCTTC	2 cut(s)	134, 704
EciI	GGCGGA	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	2 cut(s)	153, 220
Eco147I	AGGCCT	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoT14I	CCWWGG	2 cut(s)	153, 220
EcoT22I	ATGCAT	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	2 cut(s)	153, 220
Esp3I	CGTCTC	1 cut(s)	260
FaeI	CATG	3 cut(s)	157, 694, 705
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FatI	CATG	3 cut(s)	153, 690, 701
FbaI	TGATCA	1 cut(s)	640
Fnu4HI	GCNGC	8 cut(s)	40, 87, 90, 93, 96, 99, 618, 621
FokI	GGATG	3 cut(s)	335, 567, 574
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	8 cut(s)	40, 87, 90, 93, 96, 99, 618, 621
FspBI	CTAG	2 cut(s)	221, 672
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	8 cut(s)	40, 87, 90, 93, 96, 99, 618, 621
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	80, 225
HapII	CCGG	4 cut(s)	77, 175, 180, 251
HgaI	GACGC	2 cut(s)	52, 90
HhaI	GCGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	3 cut(s)	157, 694, 705
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	191, 400
HpaII	CCGG	4 cut(s)	77, 175, 180, 251
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	2 cut(s)	67, 463
Hpy188I	TCNGA	3 cut(s)	59, 106, 474
Hpy188III	TCNNGA	2 cut(s)	251, 263
Hpy8I	GTNNAC	2 cut(s)	67, 463
Hpy99I	CGWCG	2 cut(s)	32, 59
HpyAV	CCTTC	3 cut(s)	217, 317, 427
HpyCH4III	ACNGT	1 cut(s)	447
HpyCH4IV	ACGT	2 cut(s)	21, 273
HpyCH4V	TGCA	4 cut(s)	423, 441, 571, 617
HpyF10VI	GCNNNNNNNGC	6 cut(s)	86, 92, 95, 98, 626, 635
HpySE526I	ACGT	2 cut(s)	21, 273
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	157, 694, 705
HspAI	GCGC	1 cut(s)	117
Kpn2I	TCCGGA	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	6 cut(s)	16, 124, 297, 318, 363, 640
LmnI	GCTCC	4 cut(s)	10, 236, 253, 334
Lsp1109I	GCAGC	1 cut(s)	629
LweI	GCATC	2 cut(s)	541, 545
MaeI	CTAG	2 cut(s)	221, 672
MaeII	ACGT	2 cut(s)	21, 273
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	6 cut(s)	18, 126, 299, 320, 365, 642
MbiI	CCGCTC	2 cut(s)	142, 231
MboI	GATC	6 cut(s)	16, 124, 297, 318, 363, 640
MboII	GAAGA	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	2 cut(s)	311, 414
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	2 cut(s)	37, 219
Mph1103I	ATGCAT	1 cut(s)	443
MroI	TCCGGA	1 cut(s)	250
MseI	TTAA	1 cut(s)	413
MslI	CAYNNNNRTG	1 cut(s)	700
MspI	CCGG	4 cut(s)	77, 175, 180, 251
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	6 cut(s)	86, 92, 95, 98, 626, 635
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	6 cut(s)	16, 124, 297, 318, 363, 640
NlaIII	CATG	3 cut(s)	157, 694, 705
NlaIV	GGNNCC	3 cut(s)	255, 336, 581
NsiI	ATGCAT	1 cut(s)	443
NspV	TTCGAA	1 cut(s)	707
PceI	AGGCCT	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 60, 156
PfeI	GAWTC	1 cut(s)	400
PkrI	GCNGC	8 cut(s)	41, 88, 91, 94, 97, 100, 619, 622
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PsiI	TTATAA	1 cut(s)	344
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	255, 336, 581
PspPI	GGNCC	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	573
RsaI	GTAC	2 cut(s)	464, 605
RsaNI	GTAC	2 cut(s)	463, 604
RseI	CAYNNNNRTG	1 cut(s)	700
Rsr2I	CGGWCCG	1 cut(s)	177
RsrII	CGGWCCG	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	413
SatI	GCNGC	8 cut(s)	40, 87, 90, 93, 96, 99, 618, 621
Sau3AI	GATC	6 cut(s)	16, 124, 297, 318, 363, 640
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	7 cut(s)	15, 24, 276, 306, 438, 650, 716
SfaNI	GCATC	2 cut(s)	541, 545
SfcI	CTRYAG	1 cut(s)	569
SfuI	TTCGAA	1 cut(s)	707
SinI	GGWCC	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	700
SmlI	CTYRAG	2 cut(s)	284, 559
SmoI	CTYRAG	2 cut(s)	284, 559
Sse9I	AATT	2 cut(s)	311, 414
SseBI	AGGCCT	1 cut(s)	225
SspMI	CTAG	2 cut(s)	221, 672
SstI	GAGCTC	1 cut(s)	15
StuI	AGGCCT	1 cut(s)	225
StyI	CCWWGG	2 cut(s)	153, 220
TaaI	ACNGT	1 cut(s)	447
TaiI	ACGT	2 cut(s)	24, 276
TaqI	TCGA	8 cut(s)	15, 48, 159, 290, 321, 517, 535, 707
TasI	AATT	2 cut(s)	311, 414
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	7 cut(s)	42, 89, 92, 95, 98, 101, 623
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	1 cut(s)	413
Tru9I	TTAA	1 cut(s)	413
TseI	GCWGC	1 cut(s)	617
TspDTI	ATGAA	5 cut(s)	17, 121, 407, 512, 690
TspGWI	ACGGA	3 cut(s)	123, 356, 580
VpaK11BI	GGWCC	1 cut(s)	177
XmaJI	CCTAGG	1 cut(s)	220
XspI	CTAG	2 cut(s)	221, 672
Zsp2I	ATGCAT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.