AT1G05270

TraB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011100
Physical Location & Seq
Reverse (-)
1531641 .. 1534767
3127 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05270.1

Sequence Viewer

Length: 1116 bp
ATGACGATAGAGCCGACGCAATCGCCGTCTTCGGAGCCGGAGGTTCACTCTGGAGAGGACTTCGTTCACATCGATGACCCTAGGCCTACCGGCGATATCTCTTTAAGCGACAGCATAGTTAATGTGGAGAAGGATGAACTGCTCGACGAAGCGGCGGAGGAAGAATTTAGAGGCTCCGATTCTGTGTTTAGCGGCGGCGATGGCGGTGGAGCGGATGATGATGGCGGCGAGTGTTCATCGGAGGCTACTAAAGTGGAGCTACCGGAGGAATTGGCGAAAAGTGTTGTGATTCTGACGTGCGAGTCAACAGCGGATGGTGGATCTTGCGATGTGTACTTGGTTGGTACTGCTCATGTATCAAAGCAATCCTGTCTTGAAGTTGAAGCAATAATCAGCATCTTGAAACCAGAGGTTGTCTTCGTTGAATTGTGTTCGAGCCGATTGTCTGTTCTCAAACCTCAAACATTGAAGATTCCAACCATGTCGGACATGATAGAAAGTTGGAAGCAGAAACAGAACACATTCGGAATACTTTATGGATGGTTTCTTGCAAAGATCGCCAGTCATCTTGAGGTTTTTCCTGGTGCTGAGTTTCGTGTGGCGTATGAAGAGGCGATTAAATATGGCGGCAAGGTGATACTTGGTGATCGTCCTGTACAGATTACGTTAAAGAGAACATGGGCCAAGATGCCTCTATGGCACAAGGTTAAGTTTTTATACTCCATACTGTTTCAAGCTGTCTTCTTGCCGGGCGCTGAGGAACTCGAGAAAATGCTGAAAGATATGGACAATGTGGATATGGTGACTTTGGTGATTCAAGAAATGAGCAAGGAATTTCCAACTCTCATGGATACAATTGTGCATGAGCGAGACCAGTACATGGCATCCTCTTTGCTGAGAGTTGCAAGTGACCATAGTTCGGTTGTAGCAGTTATCGGAAAAGGACATATTAATGGAATCAAGAAGAATTGGAAGCAACCTATTACGATGAATGATCTAATGGAGATACCAAGCGACAAGTCAGTGTTTACGTTAAAGAGAATAATATCATCAGTGGCAGTTGCAGTTGCAGGGACAGCTATAGTTTCGGGTATACTTCTTTCAAGAAGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

371

Amino Acids

40.74

Weight (kDa)

4.89

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TraB_PrgY_gumN PF01963 107 - 326 1.1e-24 TraB/PrgY/gumN family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011100)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05270 AT2G32340 AT2G32340
fragaria_vesca FvH4_6g43520 FvH4_6g43520
malus_domestica MD09G1105400.v1.1 MD17G1093000.v1.1
prunus_persica Prupe.3G220000_v2.0.a1
pyrus_communis pycom09g02840 pycom17g09060
rosa_chinensis RchiOBHm_Chr2g0160041
rosa_laevigata RLG00000021193
rosa_multiflora Rmu_sc0002023.1_g000016
rosa_roxburghii Rroxscaffold_2G00090070
rosa_rugosa Rorug02G0479900
rosa_samantha Rh2AG546500 Rh2BG559900 Rh2CG529900 Rh2DG568600
rosa_wichuraiana Rw2G045190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 301
AccB7I CCANNNNNTGG 1 cut(s) 880
AccBSI CCGCTC 1 cut(s) 212
AccI GTMKAC 1 cut(s) 1093
AciI CCGC 9 cut(s) 152, 155, 192, 195, 204, 212, 225, 311, 627
AclWI GGATC 1 cut(s) 328
AcsI RAATTY 2 cut(s) 164, 833
AfaI GTAC 4 cut(s) 335, 346, 657, 878
AfiI CCNNNNNNNGG 2 cut(s) 880, 919
AgsI TTSAA 8 cut(s) 377, 383, 403, 425, 469, 734, 818, 1104
AjiI CACGTC 1 cut(s) 297
AjnI CCWGG 1 cut(s) 580
AluBI AGCT 3 cut(s) 259, 737, 1079
AluI AGCT 3 cut(s) 259, 737, 1079
Alw26I GTCTC 1 cut(s) 864
AlwI GGATC 1 cut(s) 328
Ama87I CYCGRG 1 cut(s) 764
AoxI GGCC 2 cut(s) 83, 681
ApoI RAATTY 2 cut(s) 164, 833
AseI ATTAAT 1 cut(s) 951
Asp700I GAANNNNTTC 1 cut(s) 521
AspA2I CCTAGG 1 cut(s) 80
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 1 cut(s) 681
AsuC2I CCSGG 1 cut(s) 750
AsuHPI GGTGA 4 cut(s) 646, 656, 814, 823
AvaI CYCGRG 1 cut(s) 764
AvrII CCTAGG 1 cut(s) 80
BaeI ACNNNNGTAYC 2 cut(s) 843, 876
BbsI GAAGAC 3 cut(s) 21, 409, 733
BbvCI CCTCAGC 1 cut(s) 756
BccI CCATC 4 cut(s) 194, 215, 308, 534
BceAI ACGGC 1 cut(s) 10
BciT130I CCWGG 1 cut(s) 582
BciVI GTATCC 1 cut(s) 844
BcnI CCSGG 1 cut(s) 750
BcoDI GTCTC 1 cut(s) 864
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 1080
BfoI RGCGCY 1 cut(s) 756
BfuI GTATCC 1 cut(s) 844
BglI GCCNNNNNGGC 1 cut(s) 697
BisI GCNGC 5 cut(s) 153, 193, 196, 226, 628
BlnI CCTAGG 1 cut(s) 80
BlsI GCNGC 5 cut(s) 154, 194, 197, 227, 629
Bme1390I CCNGG 2 cut(s) 582, 750
BmeT110I CYCGRG 1 cut(s) 764
BmgBI CACGTC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 681
BmiI GGNNCC 2 cut(s) 36, 175
BmrFI CCNGG 2 cut(s) 582, 750
BmsI GCATC 3 cut(s) 405, 678, 893
BpiI GAAGAC 3 cut(s) 21, 409, 733
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpmI CTGGAG 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 756
BpuEI CTTGAG 1 cut(s) 590
BpuMI CCSGG 1 cut(s) 750
Bsa29I ATCGAT 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 864
BsaJI CCNNGG 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 2 cut(s) 880, 919
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 561, 874
BseBI CCWGG 1 cut(s) 582
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 5 cut(s) 139, 220, 319, 545, 884
BseLI CCNNNNNNNGG 2 cut(s) 880, 919
BseMII CTCAG 3 cut(s) 579, 747, 887
BseNI ACTGG 2 cut(s) 561, 874
BshFI GGCC 2 cut(s) 85, 683
BshVI ATCGAT 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 764
BsiSI CCGG 4 cut(s) 38, 90, 263, 749
BslFI GGGAC 1 cut(s) 1087
BslI CCNNNNNNNGG 2 cut(s) 880, 919
BsmAI GTCTC 1 cut(s) 864
BsmFI GGGAC 1 cut(s) 1087
BsnI GGCC 2 cut(s) 85, 683
Bso31I GGTCTC 1 cut(s) 864
BsoBI CYCGRG 1 cut(s) 764
Bsp1407I TGTACA 1 cut(s) 655
Bsp143I GATC 4 cut(s) 320, 555, 646, 994
BspACI CCGC 9 cut(s) 152, 155, 192, 195, 204, 212, 225, 311, 627
BspANI GGCC 2 cut(s) 85, 683
BspCNI CTCAG 3 cut(s) 580, 748, 888
BspDI ATCGAT 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 36, 175
BspPI GGATC 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 864
BsrBI CCGCTC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 89
BsrGI TGTACA 1 cut(s) 655
BsrI ACTGG 2 cut(s) 561, 874
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 4 cut(s) 320, 555, 646, 994
BssNAI GTATAC 1 cut(s) 1094
BssT1I CCWWGG 1 cut(s) 80
Bst1107I GTATAC 1 cut(s) 1094
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 1 cut(s) 729
Bst6I CTCTTC 1 cut(s) 603
BstAUI TGTACA 1 cut(s) 655
BstDEI CTNAG 3 cut(s) 588, 756, 896
BstF5I GGATG 5 cut(s) 139, 220, 319, 545, 884
BstH2I RGCGCY 1 cut(s) 756
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 4 cut(s) 323, 558, 649, 997
BstMAI GTCTC 1 cut(s) 864
BstMBI GATC 4 cut(s) 320, 555, 646, 994
BstMWI GCNNNNNNNGC 4 cut(s) 201, 557, 697, 1076
BstNI CCWGG 1 cut(s) 582
BstSCI CCNGG 2 cut(s) 580, 748
BstSFI CTRYAG 1 cut(s) 1080
BstV2I GAAGAC 3 cut(s) 21, 409, 733
BstX2I RGATCY 1 cut(s) 320
BstYI RGATCY 1 cut(s) 320
BstZ17I GTATAC 1 cut(s) 1094
Bsu15I ATCGAT 1 cut(s) 72
BsuI GTATCC 1 cut(s) 844
BsuRI GGCC 2 cut(s) 85, 683
BsuTUI ATCGAT 1 cut(s) 72
BtgZI GCGATG 2 cut(s) 213, 342
BtrI CACGTC 1 cut(s) 297
BtsCI GGATG 5 cut(s) 139, 220, 319, 545, 884
BtsIMutI CAGTG 2 cut(s) 1029, 1059
CfoI GCGC 1 cut(s) 755
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 681
ClaI ATCGAT 1 cut(s) 72
CseI GACGC 1 cut(s) 25
Csp6I GTAC 4 cut(s) 334, 345, 656, 877
CviAII CATG 7 cut(s) 353, 481, 490, 678, 847, 863, 880
CviQI GTAC 4 cut(s) 334, 345, 656, 877
DdeI CTNAG 3 cut(s) 588, 756, 896
DpnI GATC 4 cut(s) 322, 557, 648, 996
DpnII GATC 4 cut(s) 320, 555, 646, 994
DrdI GACNNNNNNGTC 1 cut(s) 301
DseDI GACNNNNNNGTC 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
EciI GGCGGA 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 80
Eco147I AGGCCT 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 864
Eco32I GATATC 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 764
EcoRII CCWGG 1 cut(s) 580
EcoRV GATATC 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 7 cut(s) 356, 484, 493, 681, 850, 866, 883
FaqI GGGAC 1 cut(s) 1087
FatI CATG 7 cut(s) 352, 480, 489, 677, 846, 862, 879
FblI GTMKAC 1 cut(s) 1093
Fnu4HI GCNGC 5 cut(s) 153, 193, 196, 226, 628
FokI GGATG 5 cut(s) 146, 227, 326, 552, 871
Fsp4HI GCNGC 5 cut(s) 153, 193, 196, 226, 628
FspBI CTAG 1 cut(s) 81
GlaI GCGC 1 cut(s) 754
GluI GCNGC 5 cut(s) 153, 193, 196, 226, 628
GsuI CTGGAG 1 cut(s) 72
HaeII RGCGCY 1 cut(s) 756
HaeIII GGCC 2 cut(s) 85, 683
HapII CCGG 4 cut(s) 38, 90, 263, 749
HgaI GACGC 1 cut(s) 25
HhaI GCGC 1 cut(s) 755
Hin1II CATG 7 cut(s) 356, 484, 493, 681, 850, 866, 883
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 6 cut(s) 179, 289, 302, 472, 814, 957
HpaII CCGG 4 cut(s) 38, 90, 263, 749
HphI GGTGA 4 cut(s) 646, 656, 814, 823
Hpy166II GTNNAC 6 cut(s) 46, 67, 306, 334, 1029, 1094
Hpy188I TCNGA 7 cut(s) 34, 178, 241, 294, 487, 527, 938
Hpy188III TCNNGA 8 cut(s) 51, 374, 400, 569, 766, 818, 961, 1104
Hpy8I GTNNAC 6 cut(s) 46, 67, 306, 334, 1029, 1094
Hpy99I CGWCG 2 cut(s) 19, 149
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 729
HpyCH4IV ACGT 3 cut(s) 296, 665, 1031
HpyCH4V TGCA 5 cut(s) 551, 862, 905, 1064, 1070
HpyF10VI GCNNNNNNNGC 4 cut(s) 201, 557, 697, 1076
HpyF3I CTNAG 3 cut(s) 588, 756, 896
HpySE526I ACGT 3 cut(s) 296, 665, 1031
Hsp92II CATG 7 cut(s) 356, 484, 493, 681, 850, 866, 883
HspAI GCGC 1 cut(s) 753
Kzo9I GATC 4 cut(s) 320, 555, 646, 994
LmnI GCTCC 4 cut(s) 34, 179, 209, 256
LweI GCATC 3 cut(s) 405, 678, 893
MaeI CTAG 1 cut(s) 81
MaeII ACGT 3 cut(s) 296, 665, 1031
MaeIII GTNAC 2 cut(s) 802, 908
MalI GATC 4 cut(s) 322, 557, 648, 996
MbiI CCGCTC 1 cut(s) 212
MboI GATC 4 cut(s) 320, 555, 646, 994
MboII GAAGA 7 cut(s) 21, 173, 409, 481, 620, 733, 976
MfeI CAATTG 1 cut(s) 855
MflI RGATCY 1 cut(s) 320
MluCI AATT 6 cut(s) 164, 269, 425, 833, 855, 967
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 4 cut(s) 465, 482, 500, 863
MroXI GAANNNNTTC 1 cut(s) 521
MseI TTAA 7 cut(s) 104, 120, 618, 668, 708, 951, 1034
MslI CAYNNNNRTG 2 cut(s) 72, 951
MspA1I CMGCKG 1 cut(s) 311
MspI CCGG 4 cut(s) 38, 90, 263, 749
MspR9I CCNGG 2 cut(s) 582, 750
MunI CAATTG 1 cut(s) 855
MvaI CCWGG 1 cut(s) 582
MwoI GCNNNNNNNGC 4 cut(s) 201, 557, 697, 1076
NciI CCSGG 1 cut(s) 750
NdeII GATC 4 cut(s) 320, 555, 646, 994
NlaIII CATG 7 cut(s) 356, 484, 493, 681, 850, 866, 883
NlaIV GGNNCC 2 cut(s) 36, 175
NmuCI GTSAC 2 cut(s) 802, 908
PaeR7I CTCGAG 1 cut(s) 764
PceI AGGCCT 1 cut(s) 85
PcsI WCGNNNNNNNCGW 3 cut(s) 11, 23, 69
PdmI GAANNNNTTC 1 cut(s) 521
PfeI GAWTC 5 cut(s) 179, 289, 472, 814, 957
PflMI CCANNNNNTGG 1 cut(s) 880
PkrI GCNGC 5 cut(s) 154, 194, 197, 227, 629
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PshBI ATTAAT 1 cut(s) 951
Psp6I CCWGG 1 cut(s) 580
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 2 cut(s) 36, 175
PspPI GGNCC 1 cut(s) 681
PsuI RGATCY 1 cut(s) 320
RsaI GTAC 4 cut(s) 335, 346, 657, 878
RsaNI GTAC 4 cut(s) 334, 345, 656, 877
RseI CAYNNNNRTG 2 cut(s) 72, 951
SaqAI TTAA 7 cut(s) 104, 120, 618, 668, 708, 951, 1034
SatI GCNGC 5 cut(s) 153, 193, 196, 226, 628
Sau3AI GATC 4 cut(s) 320, 555, 646, 994
Sau96I GGNCC 1 cut(s) 681
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 582, 750
SfaNI GCATC 3 cut(s) 405, 678, 893
SfcI CTRYAG 1 cut(s) 1080
Sfr274I CTCGAG 1 cut(s) 764
SlaI CTCGAG 1 cut(s) 764
SmiMI CAYNNNNRTG 2 cut(s) 72, 951
SmlI CTYRAG 2 cut(s) 569, 764
SmoI CTYRAG 2 cut(s) 569, 764
Sse9I AATT 6 cut(s) 164, 269, 425, 833, 855, 967
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 9 cut(s) 152, 155, 192, 195, 204, 212, 225, 311, 627
SspMI CTAG 1 cut(s) 81
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 2 cut(s) 580, 748
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 1 cut(s) 729
TaiI ACGT 3 cut(s) 299, 668, 1034
TaqI TCGA 4 cut(s) 72, 144, 434, 765
TasI AATT 6 cut(s) 164, 269, 425, 833, 855, 967
TatI WGTACW 3 cut(s) 333, 655, 876
TauI GCSGC 5 cut(s) 155, 195, 198, 228, 630
TfiI GAWTC 5 cut(s) 179, 289, 472, 814, 957
Tru1I TTAA 7 cut(s) 104, 120, 618, 668, 708, 951, 1034
Tru9I TTAA 7 cut(s) 104, 120, 618, 668, 708, 951, 1034
TscAI CASTG 2 cut(s) 1029, 1059
TseFI GTSAC 2 cut(s) 802, 908
Tsp45I GTSAC 2 cut(s) 802, 908
TspDTI ATGAA 4 cut(s) 150, 225, 621, 1004
TspRI CASTG 2 cut(s) 1029, 1059
Van91I CCANNNNNTGG 1 cut(s) 880
VspI ATTAAT 1 cut(s) 951
XapI RAATTY 2 cut(s) 164, 833
XhoI CTCGAG 1 cut(s) 764
XmaJI CCTAGG 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 1093
XmnI GAANNNNTTC 1 cut(s) 521
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.