FvH4_6g43520

traB domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011100
Physical Location & Seq
Reverse (-)
33654726 .. 33657597
2872 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43520.t2

Sequence Viewer

Length: 1041 bp
ATGGACCTGGAGCCGGCCGTGCCCGACCCGAATTCCGGTGAGGATTTCGTCCACGTCGAGAATTCCCTGTCGGATAGCTTGACTGAGAGCATCGTCAATGTGGAGAGGGAGTTGGAAGAGAACGACGACGTTTCGAACAGCGTCGTCGCGGAGGAGGATTTTGACAACGGGAGGACGACGGTCCTACCGGAAGAGCTGTCCCGGAGCGTGATGGTGCTGACGTGTGCGTCCACCGCCGAGAGCGGCGTCTGCGACGTCCACGTCGTCGGAACGGCTCACGTTTCGGCGGAATCATGCAGAGAAGTTGAAGAAGTAATAAGATATTTGAAACCGGAGGTTGTTTTCTTGGAGTTATGCTCCAGCAGAGTAGCTGTACTTAGTCCTCAGAACTTGAAGGTTCCTACAGCGGGAGAAATGATAGATATGTGGAAGAAGAATCACAACGCCTTTGGAATTCTGTACGGCTGGTTTCTTGCCAAGGTTGCTAGTAAGCTTGAGGTTTTTCCTGGTGCTGAGTTTCGCGTAGGATATGATGAAGCAATGAAGTATGGGGGTAAGGTGGTACTTGGTGATCGTCCAGTGCAGATCACTTTGCGAAGGACATGGGCGAAAATGCCACTTTGGCATAAGATAAAACTAATTTACTCTATACTTTTTCAAGCCGTCTTTTTACCAGATCCTGAAGAACTTAATAAAATGCTAAAAGATATGGATGATGTTGACATGCTGACTCTTGTCATTCAAGAGATGAGTAAGGAGTTCCCAACTCTTATGGAAACGCTTGTACATGAACGAGATCAGTACATGTCGTCCACATTACTAAGAATTGCCCAGGAGCATAATTCAGTAGTAGCAGTTGTAGGGAAGGGACACCTACAAGGAATTAAAAAGCACTGGGAGCAGCCTGTTGTGGTGACAGATCTTATGGGAATTCCTTCACAAAAGACAGGTTTTTCTATGGTCAAAGTTCTTAAATCTTGTGGTGTTGTGGTTGCTGGGGCAGCCATAATATCAGGAATATATCTTGCATCAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

347

Amino Acids

38.44

Weight (kDa)

5.05

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TraB_PrgY_gumN PF01963 82 - 307 5.8e-23 TraB/PrgY/gumN family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011100)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05270 AT2G32340 AT2G32340
fragaria_vesca FvH4_6g43520 FvH4_6g43520
malus_domestica MD09G1105400.v1.1 MD17G1093000.v1.1
prunus_persica Prupe.3G220000_v2.0.a1
pyrus_communis pycom09g02840 pycom17g09060
rosa_chinensis RchiOBHm_Chr2g0160041
rosa_laevigata RLG00000021193
rosa_multiflora Rmu_sc0002023.1_g000016
rosa_roxburghii Rroxscaffold_2G00090070
rosa_rugosa Rorug02G0479900
rosa_samantha Rh2AG546500 Rh2BG559900 Rh2CG529900 Rh2DG568600
rosa_wichuraiana Rw2G045190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 226, 260
AatII GACGTC 1 cut(s) 258
AccBSI CCGCTC 1 cut(s) 243
AccII CGCG 2 cut(s) 149, 522
AciI CCGC 5 cut(s) 149, 234, 243, 287, 407
AclWI GGATC 1 cut(s) 671
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 4 cut(s) 31, 61, 453, 930
AcuI CTGAAG 1 cut(s) 702
AcyI GRCGYC 2 cut(s) 246, 255
AfaI GTAC 5 cut(s) 375, 461, 564, 786, 803
AfiI CCNNNNNNNGG 3 cut(s) 13, 35, 407
AflIII ACRYGT 2 cut(s) 221, 804
AgsI TTSAA 5 cut(s) 308, 328, 394, 659, 743
AjiI CACGTC 3 cut(s) 55, 222, 262
AjnI CCWGG 3 cut(s) 6, 505, 831
AluBI AGCT 4 cut(s) 78, 196, 371, 493
AluI AGCT 4 cut(s) 78, 196, 371, 493
AlwI GGATC 1 cut(s) 671
AlwNI CAGNNNCTG 1 cut(s) 680
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 2 cut(s) 901, 1001
ApoI RAATTY 4 cut(s) 31, 61, 453, 930
Asp700I GAANNNNTTC 1 cut(s) 934
AspS9I GGNCC 2 cut(s) 4, 181
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 3 cut(s) 50, 581, 925
AsuII TTCGAA 1 cut(s) 134
AvaII GGWCC 2 cut(s) 4, 181
BaeGI GKGCMC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 913, 1013
BccI CCATC 1 cut(s) 205
BceAI ACGGC 4 cut(s) 2, 288, 478, 647
BciT130I CCWGG 3 cut(s) 8, 507, 833
BcnI CCSGG 1 cut(s) 202
BfaI CTAG 1 cut(s) 486
BfmI CTRYAG 1 cut(s) 402
BglI GCCNNNNNGGC 1 cut(s) 622
BglII AGATCT 1 cut(s) 919
BisI GCNGC 3 cut(s) 244, 902, 1002
BlsI GCNGC 3 cut(s) 245, 903, 1003
Bme1390I CCNGG 4 cut(s) 8, 202, 507, 833
Bme18I GGWCC 2 cut(s) 4, 181
BmgBI CACGTC 3 cut(s) 55, 222, 262
BmgT120I GGNCC 2 cut(s) 4, 181
BmiI GGNNCC 2 cut(s) 12, 399
BmrFI CCNGG 4 cut(s) 8, 202, 507, 833
BmrI ACTGGG 1 cut(s) 904
BmsI GCATC 2 cut(s) 99, 1037
BmuI ACTGGG 1 cut(s) 904
BoxI GACNNNNGTC 2 cut(s) 179, 734
BplI GAGNNNNNCTC 2 cut(s) 341, 373
BpmI CTGGAG 2 cut(s) 29, 343
Bpu14I TTCGAA 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 1 cut(s) 202
BsaHI GRCGYC 2 cut(s) 246, 255
BsaJI CCNNGG 2 cut(s) 477, 831
BsaWI WCCGGW 3 cut(s) 35, 187, 331
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 35, 407
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 2 cut(s) 578, 899
Bse3DI GCAATG 1 cut(s) 546
BseBI CCWGG 3 cut(s) 8, 507, 833
BseDI CCNNGG 2 cut(s) 477, 831
BseGI GGATG 1 cut(s) 718
BseLI CCNNNNNNNGG 3 cut(s) 13, 35, 407
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 3 cut(s) 75, 398, 504
BseNI ACTGG 2 cut(s) 578, 899
BseRI GAGGAG 1 cut(s) 167
BseSI GKGCMC 1 cut(s) 24
BseX3I CGGCCG 1 cut(s) 15
BseXI GCAGC 2 cut(s) 913, 1013
BseYI CCCAGC 1 cut(s) 995
BsgI GTGCAG 1 cut(s) 602
Bsh1236I CGCG 2 cut(s) 149, 522
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 1 cut(s) 17
BsiEI CGRYCG 1 cut(s) 18
BsiSI CCGG 5 cut(s) 14, 36, 188, 202, 332
BslFI GGGAC 2 cut(s) 184, 882
BslI CCNNNNNNNGG 3 cut(s) 13, 35, 407
BsmFI GGGAC 2 cut(s) 184, 882
BsnI GGCC 1 cut(s) 17
Bsp119I TTCGAA 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 24
Bsp1407I TGTACA 1 cut(s) 784
Bsp143I GATC 5 cut(s) 571, 585, 676, 796, 919
BspACI CCGC 5 cut(s) 149, 234, 243, 287, 407
BspANI GGCC 1 cut(s) 17
BspCNI CTCAG 3 cut(s) 76, 397, 505
BspFNI CGCG 2 cut(s) 149, 522
BspLI GGNNCC 2 cut(s) 12, 399
BspPI GGATC 1 cut(s) 671
BspQI GCTCTTC 1 cut(s) 186
BspT104I TTCGAA 1 cut(s) 134
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 546
BsrFI RCCGGY 1 cut(s) 13
BsrGI TGTACA 1 cut(s) 784
BsrI ACTGG 2 cut(s) 578, 899
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 2 cut(s) 477, 831
BssMI GATC 5 cut(s) 571, 585, 676, 796, 919
BssNI GRCGYC 2 cut(s) 246, 255
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 3 cut(s) 8, 507, 833
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 2 cut(s) 111, 186
BstACI GRCGYC 2 cut(s) 246, 255
BstAUI TGTACA 1 cut(s) 784
BstBI TTCGAA 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 5 cut(s) 84, 377, 384, 513, 821
BstF5I GGATG 1 cut(s) 718
BstFNI CGCG 2 cut(s) 149, 522
BstKTI GATC 5 cut(s) 574, 588, 679, 799, 922
BstMBI GATC 5 cut(s) 571, 585, 676, 796, 919
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 7 cut(s) 19, 233, 249, 482, 622, 898, 1001
BstNI CCWGG 3 cut(s) 8, 507, 833
BstNSI RCATGY 2 cut(s) 727, 808
BstPAI GACNNNNGTC 2 cut(s) 179, 734
BstSCI CCNGG 4 cut(s) 6, 200, 505, 831
BstSFI CTRYAG 1 cut(s) 402
BstSLI GKGCMC 1 cut(s) 24
BstUI CGCG 2 cut(s) 149, 522
BstV1I GCAGC 2 cut(s) 913, 1013
BstX2I RGATCY 2 cut(s) 676, 919
BstYI RGATCY 2 cut(s) 676, 919
BstZI CGGCCG 1 cut(s) 15
BsuRI GGCC 1 cut(s) 17
BtrI CACGTC 3 cut(s) 55, 222, 262
BtsCI GGATG 1 cut(s) 718
BtsIMutI CAGTG 2 cut(s) 585, 892
Cac8I GCNNGC 1 cut(s) 15
CaiI CAGNNNCTG 1 cut(s) 680
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 2 cut(s) 4, 181
CseI GACGC 3 cut(s) 130, 216, 235
Csp6I GTAC 5 cut(s) 374, 460, 563, 785, 802
CviAII CATG 5 cut(s) 294, 603, 724, 788, 805
CviQI GTAC 5 cut(s) 374, 460, 563, 785, 802
DdeI CTNAG 5 cut(s) 84, 377, 384, 513, 821
DpnI GATC 5 cut(s) 573, 587, 678, 798, 921
DpnII GATC 5 cut(s) 571, 585, 676, 796, 919
DrdI GACNNNNNNGTC 2 cut(s) 226, 260
DseDI GACNNNNNNGTC 2 cut(s) 226, 260
EaeI YGGCCR 1 cut(s) 15
EagI CGGCCG 1 cut(s) 15
Eam1104I CTCTTC 2 cut(s) 111, 186
EarI CTCTTC 2 cut(s) 111, 186
EciI GGCGGA 1 cut(s) 302
EclXI CGGCCG 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 477
Eco47I GGWCC 2 cut(s) 4, 181
Eco52I CGGCCG 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 702
EcoRI GAATTC 4 cut(s) 31, 61, 453, 930
EcoRII CCWGG 3 cut(s) 6, 505, 831
EcoT14I CCWWGG 1 cut(s) 477
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 5 cut(s) 297, 606, 727, 791, 808
FaqI GGGAC 2 cut(s) 184, 882
FatI CATG 5 cut(s) 293, 602, 723, 787, 804
FauI CCCGC 1 cut(s) 400
Fnu4HI GCNGC 3 cut(s) 244, 902, 1002
FokI GGATG 1 cut(s) 725
Fsp4HI GCNGC 3 cut(s) 244, 902, 1002
FspBI CTAG 1 cut(s) 486
GluI GCNGC 3 cut(s) 244, 902, 1002
GsaI CCCAGC 1 cut(s) 999
GsuI CTGGAG 2 cut(s) 29, 343
HaeIII GGCC 1 cut(s) 17
HapII CCGG 5 cut(s) 14, 36, 188, 202, 332
HgaI GACGC 3 cut(s) 130, 216, 235
Hin1I GRCGYC 2 cut(s) 246, 255
Hin1II CATG 5 cut(s) 297, 606, 727, 791, 808
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 3 cut(s) 290, 436, 730
HpaII CCGG 5 cut(s) 14, 36, 188, 202, 332
HphI GGTGA 3 cut(s) 50, 581, 925
Hpy166II GTNNAC 5 cut(s) 52, 231, 259, 721, 813
Hpy188I TCNGA 3 cut(s) 73, 269, 387
Hpy188III TCNNGA 4 cut(s) 58, 680, 743, 1014
Hpy8I GTNNAC 5 cut(s) 52, 231, 259, 721, 813
Hpy99I CGWCG 9 cut(s) 59, 128, 131, 146, 149, 181, 257, 266, 269
HpyAV CCTTC 4 cut(s) 388, 591, 859, 945
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 6 cut(s) 54, 129, 221, 255, 261, 279
HpyCH4V TGCA 3 cut(s) 297, 583, 1028
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 233, 249, 482, 622, 898, 1001
HpyF3I CTNAG 5 cut(s) 84, 377, 384, 513, 821
HpySE526I ACGT 6 cut(s) 54, 129, 221, 255, 261, 279
Hsp92I GRCGYC 2 cut(s) 246, 255
Hsp92II CATG 5 cut(s) 297, 606, 727, 791, 808
KroI GCCGGC 1 cut(s) 13
KroNI GCCGGC 1 cut(s) 15
Kzo9I GATC 5 cut(s) 571, 585, 676, 796, 919
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 5 cut(s) 10, 204, 362, 835, 898
Lsp1109I GCAGC 2 cut(s) 913, 1013
LweI GCATC 2 cut(s) 99, 1037
MaeI CTAG 1 cut(s) 486
MaeII ACGT 6 cut(s) 54, 129, 221, 255, 261, 279
MaeIII GTNAC 1 cut(s) 913
MalI GATC 5 cut(s) 573, 587, 678, 798, 921
MbiI CCGCTC 1 cut(s) 243
MboI GATC 5 cut(s) 571, 585, 676, 796, 919
MboII GAAGA 6 cut(s) 128, 203, 320, 442, 445, 695
MflI RGATCY 2 cut(s) 676, 919
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 8 cut(s) 31, 61, 453, 639, 825, 841, 882, 930
MlyI GAGTC 1 cut(s) 724
MmeI TCCRAC 3 cut(s) 51, 93, 247
MnlI CCTC 8 cut(s) 34, 99, 145, 148, 165, 328, 393, 490
MroNI GCCGGC 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 934
MseI TTAA 3 cut(s) 690, 885, 972
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 5 cut(s) 14, 36, 188, 202, 332
MspR9I CCNGG 4 cut(s) 8, 202, 507, 833
MvaI CCWGG 3 cut(s) 8, 507, 833
MvnI CGCG 2 cut(s) 149, 522
MwoI GCNNNNNNNGC 7 cut(s) 19, 233, 249, 482, 622, 898, 1001
NaeI GCCGGC 1 cut(s) 15
NciI CCSGG 1 cut(s) 202
NdeII GATC 5 cut(s) 571, 585, 676, 796, 919
NgoMIV GCCGGC 1 cut(s) 13
NlaIII CATG 5 cut(s) 297, 606, 727, 791, 808
NlaIV GGNNCC 2 cut(s) 12, 399
NmeAIII GCCGAG 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 913
NspI RCATGY 2 cut(s) 727, 808
NspV TTCGAA 1 cut(s) 134
PciI ACATGT 1 cut(s) 804
PciSI GCTCTTC 1 cut(s) 186
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 261
PdiI GCCGGC 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 934
PfeI GAWTC 2 cut(s) 290, 436
PfoI TCCNGGA 1 cut(s) 200
PkrI GCNGC 3 cut(s) 245, 903, 1003
PleI GAGTC 1 cut(s) 724
PpsI GAGTC 1 cut(s) 724
PscI ACATGT 1 cut(s) 804
PshAI GACNNNNGTC 2 cut(s) 179, 734
Psp6I CCWGG 3 cut(s) 6, 505, 831
PspFI CCCAGC 1 cut(s) 995
PspGI CCWGG 3 cut(s) 6, 505, 831
PspN4I GGNNCC 2 cut(s) 12, 399
PspPI GGNCC 2 cut(s) 4, 181
PstNI CAGNNNCTG 1 cut(s) 680
PsuI RGATCY 2 cut(s) 676, 919
RsaI GTAC 5 cut(s) 375, 461, 564, 786, 803
RsaNI GTAC 5 cut(s) 374, 460, 563, 785, 802
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 3 cut(s) 690, 885, 972
SatI GCNGC 3 cut(s) 244, 902, 1002
Sau3AI GATC 5 cut(s) 571, 585, 676, 796, 919
Sau96I GGNCC 2 cut(s) 4, 181
SchI GAGTC 1 cut(s) 724
ScrFI CCNGG 4 cut(s) 8, 202, 507, 833
SduI GDGCHC 1 cut(s) 24
SfaNI GCATC 2 cut(s) 99, 1037
SfcI CTRYAG 1 cut(s) 402
SfuI TTCGAA 1 cut(s) 134
SinI GGWCC 2 cut(s) 4, 181
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 8 cut(s) 31, 61, 453, 639, 825, 841, 882, 930
SsiI CCGC 5 cut(s) 149, 234, 243, 287, 407
SspMI CTAG 1 cut(s) 486
StyD4I CCNGG 4 cut(s) 6, 200, 505, 831
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 6 cut(s) 57, 132, 224, 258, 264, 282
TaqI TCGA 2 cut(s) 57, 134
TasI AATT 8 cut(s) 31, 61, 453, 639, 825, 841, 882, 930
TatI WGTACW 3 cut(s) 373, 784, 801
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 2 cut(s) 290, 436
Tru1I TTAA 3 cut(s) 690, 885, 972
Tru9I TTAA 3 cut(s) 690, 885, 972
TscAI CASTG 2 cut(s) 585, 899
TseFI GTSAC 1 cut(s) 913
TseI GCWGC 2 cut(s) 901, 1001
Tsp45I GTSAC 1 cut(s) 913
TspDTI ATGAA 3 cut(s) 549, 557, 804
TspRI CASTG 2 cut(s) 585, 899
VpaK11BI GGWCC 2 cut(s) 4, 181
XapI RAATTY 4 cut(s) 31, 61, 453, 930
XceI RCATGY 2 cut(s) 727, 808
XmnI GAANNNNTTC 1 cut(s) 934
XspI CTAG 1 cut(s) 486
ZraI GACGTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.