AT2G32340

TraB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011100
Physical Location & Seq
Forward (+)
13731969 .. 13734534
2566 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G32340.1

Sequence Viewer

Length: 1071 bp
ATGGAGTTGAAGCCGGAGGTTCAATATGGAGATTTTTCGTTAACCAACAGCTTAGTGAATGTGGACAAGGAGGACCTTCGTAGGGAGGAAGCAGATAGCGACGCAGGTTCAGTGATTATCTGCGACCATTCGATATGTGATAGTGGTGATGGTGATATATGCGCTGTAGCAGATTATGTTGAGTGTGTGGCGGTGGAGACGACGGAGAAGTTGGAGCTGCCTGAGGAATTTGCGAAAAGCGTTATGGTTCTAACGTGCGAATCCACAGCTGAGGGTGGATCTTGTGATGTGTACTTAGTTGGCACTGCTCACGTATCACAGGAATCATGTCGAGAAGTTGAAGCTGTAATCAGCGCCTTGAAACCACAGGCTGTCTTTTTGGAGTTGTGTTCAAGTCGATTGTCTATTCTCACACCTCAGACTGTGAAGGAACCACCAACCTGGATGGAAATGATATACATGTGGAAGAAGAAACACAACCTATTTGAAATAGTTTACGGATATATTCTTGCAAAGGCCGCCAAGAAGCTTGAGGTTTTTCCTGGTGCTGAATTTCGTGTGGGATTTGAAGAGGCAAACAAATATGGTGGCAGAGTGTTTCTTGGCGATCGCTCAGTACAGATCACGTTACAGAGAACATGGGGTAAGATGCCTCTATGGCATAAAATAAAACTAGTGTATAGCATAGTAAGTCAAGCTGTCTTTCTGCCGAACCCTAAGGAACTTGAGAAGATGCTGAAAGACCTGGGCGATGGGGATATGCTGACATTGGCGATTCAAGAAATGAGCACGGAATTTCCGACTCTCATGGAGACACTTGTGCATGAGCGAGATAAGTACATGGCATATCAATTGTTGAGAATTGCAAGTGAGCATAGTTCAGTCGTGGCAGTTGTGGGTAGAGGACATCTTCAAGGGATCAAGAAGAATTGGAACCAAACTATAAACATAAAGGAACTGATGGAGTTACCGACAAATGAATCCATATTTACTGTAAAGAATATTCTGAAATATATGGTGGTTGTAGTCGTTGGAACAGCCATAGTTTCCGGAATGTATCTTGCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

356

Amino Acids

39.88

Weight (kDa)

5.15

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TraB_PrgY_gumN PF01963 91 - 313 2e-25 TraB/PrgY/gumN family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011100)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05270 AT2G32340 AT2G32340
fragaria_vesca FvH4_6g43520 FvH4_6g43520
malus_domestica MD09G1105400.v1.1 MD17G1093000.v1.1
prunus_persica Prupe.3G220000_v2.0.a1
pyrus_communis pycom09g02840 pycom17g09060
rosa_chinensis RchiOBHm_Chr2g0160041
rosa_laevigata RLG00000021193
rosa_multiflora Rmu_sc0002023.1_g000016
rosa_roxburghii Rroxscaffold_2G00090070
rosa_rugosa Rorug02G0479900
rosa_samantha Rh2AG546500 Rh2BG559900 Rh2CG529900 Rh2DG568600
rosa_wichuraiana Rw2G045190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AccIII TCCGGA 1 cut(s) 1049
AciI CCGC 2 cut(s) 191, 519
AclWI GGATC 2 cut(s) 286, 926
AcsI RAATTY 3 cut(s) 227, 551, 794
AfaI GTAC 3 cut(s) 293, 618, 839
AfiI CCNNNNNNNGG 1 cut(s) 82
AflIII ACRYGT 1 cut(s) 459
AgsI TTSAA 9 cut(s) 10, 23, 341, 361, 393, 488, 569, 779, 914
AhlI ACTAGT 1 cut(s) 673
AjnI CCWGG 3 cut(s) 440, 541, 744
AluBI AGCT 6 cut(s) 51, 217, 269, 344, 529, 698
AluI AGCT 6 cut(s) 51, 217, 269, 344, 529, 698
Alw21I GWGCWC 1 cut(s) 791
Alw26I GTCTC 2 cut(s) 191, 806
AlwI GGATC 2 cut(s) 286, 926
Aor13HI TCCGGA 1 cut(s) 1049
AoxI GGCC 1 cut(s) 516
ApeKI GCWGC 1 cut(s) 217
ApoI RAATTY 3 cut(s) 227, 551, 794
AsiSI GCGATCGC 1 cut(s) 610
AspLEI GCGC 2 cut(s) 164, 356
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 158, 164
AvaII GGWCC 1 cut(s) 73
AxyI CCTNAGG 2 cut(s) 222, 717
Bbv12I GWGCWC 1 cut(s) 791
BbvCI CCTCAGC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 204
BccI CCATC 4 cut(s) 143, 439, 746, 955
BciT130I CCWGG 3 cut(s) 442, 543, 746
BcoDI GTCTC 2 cut(s) 191, 806
BcuI ACTAGT 1 cut(s) 673
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 357
BfuAI ACCTGC 1 cut(s) 95
BglI GCCNNNNNGGC 1 cut(s) 658
BisI GCNGC 2 cut(s) 218, 519
BlsI GCNGC 2 cut(s) 219, 520
Bme1390I CCNGG 3 cut(s) 442, 543, 746
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 432, 935
BmrFI CCNGG 3 cut(s) 442, 543, 746
BmsI GCATC 2 cut(s) 639, 723
Bpu10I CCTNAGC 1 cut(s) 270
BpuEI CTTGAG 2 cut(s) 551, 746
BsaAI YACGTR 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 745
BsaWI WCCGGW 1 cut(s) 1049
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse21I CCTNAGG 2 cut(s) 222, 717
BseAI TCCGGA 1 cut(s) 1049
BseBI CCWGG 3 cut(s) 442, 543, 746
BseDI CCNNGG 1 cut(s) 745
BseGI GGATG 1 cut(s) 450
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 4 cut(s) 213, 261, 431, 627
BseXI GCAGC 1 cut(s) 204
Bsh1285I CGRYCG 1 cut(s) 610
BshFI GGCC 1 cut(s) 518
BsiEI CGRYCG 1 cut(s) 610
BsiHKAI GWGCWC 1 cut(s) 791
BsiSI CCGG 2 cut(s) 14, 1050
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 2 cut(s) 191, 806
BsmBI CGTCTC 1 cut(s) 191
BsnI GGCC 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 791
Bsp13I TCCGGA 1 cut(s) 1049
Bsp143I GATC 4 cut(s) 278, 607, 621, 918
BspACI CCGC 2 cut(s) 191, 519
BspANI GGCC 1 cut(s) 518
BspCNI CTCAG 4 cut(s) 214, 262, 430, 626
BspEI TCCGGA 1 cut(s) 1049
BspLI GGNNCC 2 cut(s) 432, 935
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 2 cut(s) 286, 926
BssECI CCNNGG 1 cut(s) 745
BssMI GATC 4 cut(s) 278, 607, 621, 918
Bst2UI CCWGG 3 cut(s) 442, 543, 746
Bst4CI ACNGT 2 cut(s) 424, 994
Bst6I CTCTTC 1 cut(s) 564
BstBAI YACGTR 1 cut(s) 313
BstDEI CTNAG 8 cut(s) 52, 222, 270, 295, 417, 613, 717, 1065
BstF5I GGATG 1 cut(s) 450
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 2 cut(s) 164, 356
BstKTI GATC 4 cut(s) 281, 610, 624, 921
BstMAI GTCTC 2 cut(s) 191, 806
BstMBI GATC 4 cut(s) 278, 607, 621, 918
BstMCI CGRYCG 1 cut(s) 610
BstMWI GCNNNNNNNGC 2 cut(s) 518, 658
BstNI CCWGG 3 cut(s) 442, 543, 746
BstNSI RCATGY 1 cut(s) 463
BstSCI CCNGG 3 cut(s) 440, 541, 744
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 278
BstXI CCANNNNNNTGG 1 cut(s) 441
BstYI RGATCY 1 cut(s) 278
Bsu36I CCTNAGG 2 cut(s) 222, 717
BsuRI GGCC 1 cut(s) 518
BtgZI GCGATG 1 cut(s) 765
BtsCI GGATG 1 cut(s) 450
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 2 cut(s) 117, 303
BveI ACCTGC 1 cut(s) 95
CfoI GCGC 2 cut(s) 164, 356
Cfr13I GGNCC 1 cut(s) 73
CseI GACGC 1 cut(s) 110
Csp6I GTAC 3 cut(s) 292, 617, 838
CspCI CAANNNNNGTGG 2 cut(s) 568, 603
CviAII CATG 6 cut(s) 327, 460, 639, 808, 824, 841
CviQI GTAC 3 cut(s) 292, 617, 838
DdeI CTNAG 8 cut(s) 52, 222, 270, 295, 417, 613, 717, 1065
DpnI GATC 4 cut(s) 280, 609, 623, 920
DpnII GATC 4 cut(s) 278, 607, 621, 918
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 73
Eco81I CCTNAGG 2 cut(s) 222, 717
EcoO109I RGGNCCY 1 cut(s) 73
EcoRII CCWGG 3 cut(s) 440, 541, 744
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 6 cut(s) 330, 463, 642, 811, 827, 844
FatI CATG 6 cut(s) 326, 459, 638, 807, 823, 840
Fnu4HI GCNGC 2 cut(s) 218, 519
FokI GGATG 1 cut(s) 457
Fsp4HI GCNGC 2 cut(s) 218, 519
FspBI CTAG 1 cut(s) 674
GlaI GCGC 2 cut(s) 163, 355
GluI GCNGC 2 cut(s) 218, 519
HaeII RGCGCY 1 cut(s) 357
HaeIII GGCC 1 cut(s) 518
HapII CCGG 2 cut(s) 14, 1050
HgaI GACGC 1 cut(s) 110
HhaI GCGC 2 cut(s) 164, 356
Hin1II CATG 6 cut(s) 330, 463, 642, 811, 827, 844
Hin6I GCGC 2 cut(s) 162, 354
HinP1I GCGC 2 cut(s) 162, 354
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 5 cut(s) 260, 323, 775, 802, 980
HpaI GTTAAC 1 cut(s) 42
HpaII CCGG 2 cut(s) 14, 1050
HphI GGTGA 2 cut(s) 158, 164
Hpy166II GTNNAC 4 cut(s) 42, 64, 292, 496
Hpy188I TCNGA 3 cut(s) 420, 801, 1008
Hpy188III TCNNGA 4 cut(s) 332, 779, 922, 1050
Hpy8I GTNNAC 4 cut(s) 42, 64, 292, 496
Hpy99I CGWCG 2 cut(s) 104, 205
HpyAV CCTTC 2 cut(s) 86, 421
HpyCH4III ACNGT 2 cut(s) 424, 994
HpyCH4IV ACGT 3 cut(s) 254, 312, 626
HpyCH4V TGCA 3 cut(s) 512, 823, 866
HpyF10VI GCNNNNNNNGC 2 cut(s) 518, 658
HpyF3I CTNAG 8 cut(s) 52, 222, 270, 295, 417, 613, 717, 1065
HpySE526I ACGT 3 cut(s) 254, 312, 626
Hsp92II CATG 6 cut(s) 330, 463, 642, 811, 827, 844
HspAI GCGC 2 cut(s) 162, 354
Kpn2I TCCGGA 1 cut(s) 1049
KspAI GTTAAC 1 cut(s) 42
Kzo9I GATC 4 cut(s) 278, 607, 621, 918
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 1 cut(s) 204
LweI GCATC 2 cut(s) 639, 723
MaeI CTAG 1 cut(s) 674
MaeII ACGT 3 cut(s) 254, 312, 626
MaeIII GTNAC 2 cut(s) 627, 966
MalI GATC 4 cut(s) 280, 609, 623, 920
MboI GATC 4 cut(s) 278, 607, 621, 918
MboII GAAGA 6 cut(s) 478, 481, 581, 742, 902, 937
MfeI CAATTG 1 cut(s) 851
MflI RGATCY 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 791
MluCI AATT 6 cut(s) 227, 551, 794, 851, 861, 928
MlyI GAGTC 1 cut(s) 796
MmeI TCCRAC 3 cut(s) 192, 824, 1012
MroI TCCGGA 1 cut(s) 1049
MseI TTAA 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 2 cut(s) 14, 1050
MspR9I CCNGG 3 cut(s) 442, 543, 746
MunI CAATTG 1 cut(s) 851
MvaI CCWGG 3 cut(s) 442, 543, 746
MwoI GCNNNNNNNGC 2 cut(s) 518, 658
NdeII GATC 4 cut(s) 278, 607, 621, 918
NlaIII CATG 6 cut(s) 330, 463, 642, 811, 827, 844
NlaIV GGNNCC 2 cut(s) 432, 935
NspI RCATGY 1 cut(s) 463
PciI ACATGT 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 797
PfeI GAWTC 4 cut(s) 260, 323, 775, 980
PkrI GCNGC 2 cut(s) 219, 520
Ple19I CGATCG 1 cut(s) 610
PleI GAGTC 1 cut(s) 796
PpsI GAGTC 1 cut(s) 796
Ppu21I YACGTR 1 cut(s) 313
PpuMI RGGWCCY 1 cut(s) 73
PscI ACATGT 1 cut(s) 459
Psp5II RGGWCCY 1 cut(s) 73
Psp6I CCWGG 3 cut(s) 440, 541, 744
PspGI CCWGG 3 cut(s) 440, 541, 744
PspN4I GGNNCC 2 cut(s) 432, 935
PspPI GGNCC 1 cut(s) 73
PspPPI RGGWCCY 1 cut(s) 73
PsuI RGATCY 1 cut(s) 278
PvuI CGATCG 1 cut(s) 610
PvuII CAGCTG 1 cut(s) 269
RgaI GCGATCGC 1 cut(s) 610
RsaI GTAC 3 cut(s) 293, 618, 839
RsaNI GTAC 3 cut(s) 292, 617, 838
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 2 cut(s) 218, 519
Sau3AI GATC 4 cut(s) 278, 607, 621, 918
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 1 cut(s) 796
ScrFI CCNGG 3 cut(s) 442, 543, 746
SduI GDGCHC 1 cut(s) 791
SfaAI GCGATCGC 1 cut(s) 610
SfaNI GCATC 2 cut(s) 639, 723
SfcI CTRYAG 1 cut(s) 165
SgfI GCGATCGC 1 cut(s) 610
SinI GGWCC 1 cut(s) 73
SmlI CTYRAG 2 cut(s) 530, 725
SmoI CTYRAG 2 cut(s) 530, 725
SpeI ACTAGT 1 cut(s) 673
Sse9I AATT 6 cut(s) 227, 551, 794, 851, 861, 928
SsiI CCGC 2 cut(s) 191, 519
SspI AATATT 1 cut(s) 1003
SspMI CTAG 1 cut(s) 674
StyD4I CCNGG 3 cut(s) 440, 541, 744
TaaI ACNGT 2 cut(s) 424, 994
TaiI ACGT 3 cut(s) 257, 315, 629
TaqI TCGA 3 cut(s) 131, 331, 397
TasI AATT 6 cut(s) 227, 551, 794, 851, 861, 928
TatI WGTACW 3 cut(s) 291, 616, 837
TauI GCSGC 1 cut(s) 521
TfiI GAWTC 4 cut(s) 260, 323, 775, 980
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 2 cut(s) 117, 310
TseI GCWGC 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 993
TspGWI ACGGA 3 cut(s) 218, 513, 806
TspRI CASTG 2 cut(s) 117, 310
VpaK11BI GGWCC 1 cut(s) 73
XapI RAATTY 3 cut(s) 227, 551, 794
XceI RCATGY 1 cut(s) 463
XspI CTAG 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.