Rh2AG546500

traB domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011100
Physical Location & Seq
Reverse (-)
77531029 .. 77533716
2688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG546500.1

Sequence Viewer

Length: 990 bp
ATGGATGGCTCTTCGATTTCTATGAATCGCTGGACTCGACTCTACTCGCTCACTTCTCCCCTAAACGCCCTTGCTTTCGCTCCTCGATCGCGAAAAGCACAATTCTTGACCCTACGAAACCGAAGATTTACGACATCTGCCACCGCCGGCGGTCACAACCGGCTACGGCGCGCGATGGACCGTGGATCATCGACCGTGCCCGACCCGAATTCGGCCGAGGATTTCGTCCACGTCGAGAATTCCCTGTCGGATAGCTTGTCTGATAGCATCGTCAATGTGGAGGTGCCTAGAGAGGAGGACGACGACGGCGACGTCGTTTCGACCAGCGCTGCCGCGGCGGAGGAGGAGGACGACCGGGGGAGGAAGGTCCTCCCGGAGGATCTGTCCCGGAGCGTGGTGGTGCTGACGTGTGAGTCCTCCGCCGAGAGCGGCGTTTGCGACGTGCACCTCGTCGGAACGGCGCATGTTTCCGTGGAATCATGCAGAGAAGTCGAAGCAGTGATAAGTTTTTTGAAACCAGAGGTTGTTTTCTTGGAGTTATGCACCAGCAGAGTAGCGGTACTTAGTCCTCAGAACTTGAAGGTTCCTACAGCGAGAGAAATGATAGATATGTGGAAGAAGAATCACAATGTCTTTGGAATTGTTTACAGCTGGTTCCTTGCCAAGGTTGCATGTAAGCTTGAGGTGTTTCCTGGTGCTGAGTTTCGTGTAGCATATGACGAAGCGATGAAGTATGGGGGTAAGGTGGTACTTGGTGATCGTCCAGTGCAGATTACTTTGCGAAGGACATGGGCAAAAATGCCACTTTGGCATAAGATAAAACTAATCTACTCCATACTCTTTCAAGCGGTCTTTTTACCCGATCCTGAAGATCTTAATAAAATGCTAAAGGAAATGGATGATGTTGACATGCTGACCCTTGTGATTCAAGAGATGAGTAAGGAGTTCCCAACTCTAATGGAAACGCTTGTACATGAACGAGATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

329

Amino Acids

36.96

Weight (kDa)

5.32

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TraB_PrgY_gumN PF01963 144 - 329 2.7e-11 TraB/PrgY/gumN family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011100)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05270 AT2G32340 AT2G32340
fragaria_vesca FvH4_6g43520 FvH4_6g43520
malus_domestica MD09G1105400.v1.1 MD17G1093000.v1.1
prunus_persica Prupe.3G220000_v2.0.a1
pyrus_communis pycom09g02840 pycom17g09060
rosa_chinensis RchiOBHm_Chr2g0160041
rosa_laevigata RLG00000021193
rosa_multiflora Rmu_sc0002023.1_g000016
rosa_roxburghii Rroxscaffold_2G00090070
rosa_rugosa Rorug02G0479900
rosa_samantha Rh2AG546500 Rh2BG559900 Rh2CG529900 Rh2DG568600
rosa_wichuraiana Rw2G045190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 311, 412
AatII GACGTC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 283
AccBSI CCGCTC 1 cut(s) 429
AccII CGCG 4 cut(s) 91, 171, 173, 335
AciI CCGC 9 cut(s) 144, 150, 333, 335, 338, 420, 429, 557, 848
AclWI GGATC 3 cut(s) 193, 387, 857
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 2 cut(s) 208, 238
AcuI CTGAAG 1 cut(s) 888
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 3 cut(s) 561, 750, 972
AfeI AGCGCT 1 cut(s) 328
AfiI CCNNNNNNNGG 4 cut(s) 211, 376, 394, 664
AflIII ACRYGT 1 cut(s) 407
AgsI TTSAA 4 cut(s) 514, 580, 845, 929
AjiI CACGTC 3 cut(s) 232, 408, 442
AjnI CCWGG 1 cut(s) 691
AluBI AGCT 3 cut(s) 255, 651, 679
AluI AGCT 3 cut(s) 255, 651, 679
Alw21I GWGCWC 1 cut(s) 447
Alw44I GTGCAC 1 cut(s) 443
AlwI GGATC 3 cut(s) 193, 387, 857
Aor51HI AGCGCT 1 cut(s) 328
AoxI GGCC 1 cut(s) 213
ApaLI GTGCAC 1 cut(s) 443
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 2 cut(s) 208, 238
AspLEI GCGC 4 cut(s) 171, 173, 329, 463
AspS9I GGNCC 2 cut(s) 178, 367
AsuC2I CCSGG 3 cut(s) 356, 374, 388
AsuHPI GGTGA 1 cut(s) 767
AvaII GGWCC 2 cut(s) 178, 367
BaeGI GKGCMC 2 cut(s) 201, 447
BanI GGYRCC 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 1 cut(s) 316
BccI CCATC 1 cut(s) 169
BceAI ACGGC 3 cut(s) 182, 322, 474
BcgI CGANNNNNNTGC 2 cut(s) 472, 506
BciT130I CCWGG 1 cut(s) 693
BcnI CCSGG 3 cut(s) 356, 374, 388
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 588
BfoI RGCGCY 1 cut(s) 330
BglI GCCNNNNNGGC 1 cut(s) 808
BglII AGATCT 1 cut(s) 871
BisI GCNGC 4 cut(s) 330, 333, 336, 430
BlsI GCNGC 4 cut(s) 331, 334, 337, 431
Bme1390I CCNGG 4 cut(s) 356, 374, 388, 693
Bme18I GGWCC 2 cut(s) 178, 367
BmgBI CACGTC 3 cut(s) 232, 408, 442
BmgT120I GGNCC 2 cut(s) 178, 367
BmiI GGNNCC 3 cut(s) 285, 585, 656
BmrFI CCNGG 4 cut(s) 356, 374, 388, 693
BmsI GCATC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 701
BpuMI CCSGG 3 cut(s) 356, 374, 388
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 6 cut(s) 181, 216, 333, 355, 471, 663
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 4 cut(s) 211, 376, 394, 664
Bse118I RCCGGY 2 cut(s) 146, 159
Bse1I ACTGG 1 cut(s) 764
BseBI CCWGG 1 cut(s) 693
BseDI CCNNGG 6 cut(s) 181, 216, 333, 355, 471, 663
BseGI GGATG 2 cut(s) 10, 904
BseLI CCNNNNNNNGG 4 cut(s) 211, 376, 394, 664
BseMII CTCAG 2 cut(s) 584, 690
BseNI ACTGG 1 cut(s) 764
BsePI GCGCGC 1 cut(s) 169
BseRI GAGGAG 4 cut(s) 72, 308, 356, 359
BseSI GKGCMC 2 cut(s) 201, 447
BseX3I CGGCCG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 316
BsgI GTGCAG 1 cut(s) 788
Bsh1236I CGCG 4 cut(s) 91, 171, 173, 335
Bsh1285I CGRYCG 4 cut(s) 89, 195, 216, 355
BshFI GGCC 1 cut(s) 215
BshNI GGYRCC 1 cut(s) 283
BsiEI CGRYCG 4 cut(s) 89, 195, 216, 355
BsiHKAI GWGCWC 1 cut(s) 447
BsiSI CCGG 5 cut(s) 147, 160, 355, 374, 388
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 4 cut(s) 211, 376, 394, 664
BsmFI GGGAC 1 cut(s) 370
BsnI GGCC 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 201, 447
Bsp1407I TGTACA 1 cut(s) 970
Bsp143I GATC 7 cut(s) 86, 185, 379, 757, 862, 871, 982
Bsp68I TCGCGA 1 cut(s) 91
BspACI CCGC 9 cut(s) 144, 150, 333, 335, 338, 420, 429, 557, 848
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 2 cut(s) 583, 691
BspFNI CGCG 4 cut(s) 91, 171, 173, 335
BspLI GGNNCC 3 cut(s) 285, 585, 656
BspPI GGATC 3 cut(s) 193, 387, 857
BspQI GCTCTTC 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 283
BsrBI CCGCTC 1 cut(s) 429
BsrFI RCCGGY 2 cut(s) 146, 159
BsrGI TGTACA 1 cut(s) 970
BsrI ACTGG 1 cut(s) 764
BssAI RCCGGY 2 cut(s) 146, 159
BssECI CCNNGG 6 cut(s) 181, 216, 333, 355, 471, 663
BssHII GCGCGC 1 cut(s) 169
BssMI GATC 7 cut(s) 86, 185, 379, 757, 862, 871, 982
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 663
Bst2UI CCWGG 1 cut(s) 693
Bst4CI ACNGT 2 cut(s) 182, 196
Bst6I CTCTTC 1 cut(s) 16
BstACI GRCGYC 1 cut(s) 312
BstAUI TGTACA 1 cut(s) 970
BstC8I GCNNGC 2 cut(s) 148, 171
BstDEI CTNAG 3 cut(s) 563, 570, 699
BstDSI CCRYGG 3 cut(s) 181, 333, 471
BstENI CCTNNNNNAGG 2 cut(s) 374, 662
BstF5I GGATG 2 cut(s) 10, 904
BstFNI CGCG 4 cut(s) 91, 171, 173, 335
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 4 cut(s) 171, 173, 329, 463
BstKTI GATC 7 cut(s) 89, 188, 382, 760, 865, 874, 985
BstMBI GATC 7 cut(s) 86, 185, 379, 757, 862, 871, 982
BstMCI CGRYCG 4 cut(s) 89, 195, 216, 355
BstMWI GCNNNNNNNGC 4 cut(s) 335, 435, 668, 808
BstNI CCWGG 1 cut(s) 693
BstNSI RCATGY 3 cut(s) 467, 675, 913
BstSCI CCNGG 4 cut(s) 354, 372, 386, 691
BstSFI CTRYAG 1 cut(s) 588
BstSLI GKGCMC 2 cut(s) 201, 447
BstUI CGCG 4 cut(s) 91, 171, 173, 335
BstV1I GCAGC 1 cut(s) 316
BstX2I RGATCY 2 cut(s) 379, 871
BstYI RGATCY 2 cut(s) 379, 871
BstZI CGGCCG 1 cut(s) 213
BsuRI GGCC 1 cut(s) 215
BtgI CCRYGG 3 cut(s) 181, 333, 471
BtgZI GCGATG 2 cut(s) 188, 740
BtrI CACGTC 3 cut(s) 232, 408, 442
BtsCI GGATG 2 cut(s) 10, 904
BtsI GCAGTG 1 cut(s) 504
BtsIMutI CAGTG 2 cut(s) 504, 771
BtuMI TCGCGA 1 cut(s) 91
Cac8I GCNNGC 2 cut(s) 148, 171
CfoI GCGC 4 cut(s) 171, 173, 329, 463
Cfr10I RCCGGY 2 cut(s) 146, 159
Cfr13I GGNCC 2 cut(s) 178, 367
Cfr42I CCGCGG 1 cut(s) 336
Csp6I GTAC 3 cut(s) 560, 749, 971
CviAII CATG 6 cut(s) 464, 480, 672, 789, 910, 974
CviJI RGCY 6 cut(s) 9, 163, 215, 255, 651, 679
CviKI_1 RGCY 6 cut(s) 9, 163, 215, 255, 651, 679
CviQI GTAC 3 cut(s) 560, 749, 971
DdeI CTNAG 3 cut(s) 563, 570, 699
DpnI GATC 7 cut(s) 88, 187, 381, 759, 864, 873, 984
DpnII GATC 7 cut(s) 86, 185, 379, 757, 862, 871, 982
DrdI GACNNNNNNGTC 2 cut(s) 311, 412
DseDI GACNNNNNNGTC 2 cut(s) 311, 412
EaeI YGGCCR 1 cut(s) 213
EagI CGGCCG 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
EciI GGCGGA 2 cut(s) 353, 409
EclXI CGGCCG 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 663
Eco47I GGWCC 2 cut(s) 178, 367
Eco47III AGCGCT 1 cut(s) 328
Eco52I CGGCCG 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 888
EcoNI CCTNNNNNAGG 2 cut(s) 374, 662
EcoO109I RGGNCCY 1 cut(s) 367
EcoRI GAATTC 2 cut(s) 208, 238
EcoRII CCWGG 1 cut(s) 691
EcoT14I CCWWGG 1 cut(s) 663
ErhI CCWWGG 1 cut(s) 663
FaeI CATG 6 cut(s) 467, 483, 675, 792, 913, 977
FaqI GGGAC 1 cut(s) 370
FatI CATG 6 cut(s) 463, 479, 671, 788, 909, 973
FauNDI CATATG 1 cut(s) 715
Fnu4HI GCNGC 4 cut(s) 330, 333, 336, 430
FokI GGATG 2 cut(s) 17, 911
Fsp4HI GCNGC 4 cut(s) 330, 333, 336, 430
FspBI CTAG 1 cut(s) 288
GlaI GCGC 4 cut(s) 170, 172, 328, 462
GluI GCNGC 4 cut(s) 330, 333, 336, 430
HaeII RGCGCY 1 cut(s) 330
HaeIII GGCC 1 cut(s) 215
HapII CCGG 5 cut(s) 147, 160, 355, 374, 388
HhaI GCGC 4 cut(s) 171, 173, 329, 463
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 6 cut(s) 467, 483, 675, 792, 913, 977
Hin6I GCGC 4 cut(s) 169, 171, 327, 461
HinP1I GCGC 4 cut(s) 169, 171, 327, 461
HincII GTYRAC 1 cut(s) 907
HindII GTYRAC 1 cut(s) 907
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 7 cut(s) 25, 34, 39, 413, 476, 622, 925
HpaII CCGG 5 cut(s) 147, 160, 355, 374, 388
HphI GGTGA 1 cut(s) 767
Hpy166II GTNNAC 4 cut(s) 229, 445, 646, 907
Hpy188I TCNGA 4 cut(s) 250, 262, 455, 573
Hpy188III TCNNGA 5 cut(s) 90, 106, 235, 866, 929
Hpy8I GTNNAC 4 cut(s) 229, 445, 646, 907
Hpy99I CGWCG 7 cut(s) 236, 305, 308, 314, 317, 443, 455
HpyAV CCTTC 3 cut(s) 358, 574, 777
HpyCH4III ACNGT 2 cut(s) 182, 196
HpyCH4IV ACGT 4 cut(s) 231, 312, 407, 441
HpyCH4V TGCA 5 cut(s) 445, 483, 543, 671, 769
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 435, 668, 808
HpyF3I CTNAG 3 cut(s) 563, 570, 699
HpySE526I ACGT 4 cut(s) 231, 312, 407, 441
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 6 cut(s) 467, 483, 675, 792, 913, 977
HspAI GCGC 4 cut(s) 169, 171, 327, 461
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
KspI CCGCGG 1 cut(s) 336
Kzo9I GATC 7 cut(s) 86, 185, 379, 757, 862, 871, 982
LguI GCTCTTC 1 cut(s) 16
LmnI GCTCC 2 cut(s) 85, 390
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 1 cut(s) 276
MaeI CTAG 1 cut(s) 288
MaeII ACGT 4 cut(s) 231, 312, 407, 441
MaeIII GTNAC 1 cut(s) 152
MalI GATC 7 cut(s) 88, 187, 381, 759, 864, 873, 984
MbiI CCGCTC 1 cut(s) 429
MboI GATC 7 cut(s) 86, 185, 379, 757, 862, 871, 982
MboII GAAGA 5 cut(s) 3, 135, 628, 631, 881
MflI RGATCY 2 cut(s) 379, 871
MhlI GDGCHC 2 cut(s) 201, 447
MluCI AATT 4 cut(s) 101, 208, 238, 639
MlyI GAGTC 3 cut(s) 28, 33, 422
MmeI TCCRAC 2 cut(s) 228, 433
MreI CGCCGGCG 1 cut(s) 146
MroNI GCCGGC 1 cut(s) 146
MseI TTAA 1 cut(s) 876
MspA1I CMGCKG 2 cut(s) 335, 651
MspI CCGG 5 cut(s) 147, 160, 355, 374, 388
MspR9I CCNGG 4 cut(s) 356, 374, 388, 693
MvaI CCWGG 1 cut(s) 693
MvnI CGCG 4 cut(s) 91, 171, 173, 335
MwoI GCNNNNNNNGC 4 cut(s) 335, 435, 668, 808
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 3 cut(s) 356, 374, 388
NdeI CATATG 1 cut(s) 715
NdeII GATC 7 cut(s) 86, 185, 379, 757, 862, 871, 982
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 6 cut(s) 467, 483, 675, 792, 913, 977
NlaIV GGNNCC 3 cut(s) 285, 585, 656
NmeAIII GCCGAG 2 cut(s) 241, 448
NmuCI GTSAC 1 cut(s) 152
NruI TCGCGA 1 cut(s) 91
NspI RCATGY 3 cut(s) 467, 675, 913
PauI GCGCGC 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 16
PcsI WCGNNNNNNNCGW 6 cut(s) 34, 231, 306, 309, 312, 447
PdiI GCCGGC 1 cut(s) 148
PfeI GAWTC 4 cut(s) 25, 476, 622, 925
PfoI TCCNGGA 2 cut(s) 372, 386
PkrI GCNGC 4 cut(s) 331, 334, 337, 431
Ple19I CGATCG 1 cut(s) 89
PleI GAGTC 3 cut(s) 28, 33, 421
PpsI GAGTC 3 cut(s) 28, 33, 421
PpuMI RGGWCCY 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 691
PspGI CCWGG 1 cut(s) 691
PspN4I GGNNCC 3 cut(s) 285, 585, 656
PspPI GGNCC 2 cut(s) 178, 367
PspPPI RGGWCCY 1 cut(s) 367
PsuI RGATCY 2 cut(s) 379, 871
PteI GCGCGC 1 cut(s) 169
PvuI CGATCG 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 651
RruI TCGCGA 1 cut(s) 91
RsaI GTAC 3 cut(s) 561, 750, 972
RsaNI GTAC 3 cut(s) 560, 749, 971
SacII CCGCGG 1 cut(s) 336
SapI GCTCTTC 1 cut(s) 16
SaqAI TTAA 1 cut(s) 876
SatI GCNGC 4 cut(s) 330, 333, 336, 430
Sau3AI GATC 7 cut(s) 86, 185, 379, 757, 862, 871, 982
Sau96I GGNCC 2 cut(s) 178, 367
SchI GAGTC 3 cut(s) 28, 33, 422
ScrFI CCNGG 4 cut(s) 356, 374, 388, 693
SduI GDGCHC 2 cut(s) 201, 447
SfaNI GCATC 1 cut(s) 276
SfcI CTRYAG 1 cut(s) 588
Sfr303I CCGCGG 1 cut(s) 336
SgrAI CRCCGGYG 1 cut(s) 146
SgrBI CCGCGG 1 cut(s) 336
SinI GGWCC 2 cut(s) 178, 367
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
Sse9I AATT 4 cut(s) 101, 208, 238, 639
SsiI CCGC 9 cut(s) 144, 150, 333, 335, 338, 420, 429, 557, 848
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 4 cut(s) 354, 372, 386, 691
StyI CCWWGG 1 cut(s) 663
TaaI ACNGT 2 cut(s) 182, 196
TaiI ACGT 4 cut(s) 234, 315, 410, 444
TaqI TCGA 7 cut(s) 14, 37, 85, 191, 234, 320, 492
TasI AATT 4 cut(s) 101, 208, 238, 639
TatI WGTACW 1 cut(s) 970
TauI GCSGC 3 cut(s) 335, 338, 432
TfiI GAWTC 4 cut(s) 25, 476, 622, 925
Tru1I TTAA 1 cut(s) 876
Tru9I TTAA 1 cut(s) 876
TscAI CASTG 2 cut(s) 504, 771
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 3 cut(s) 38, 743, 990
TspGWI ACGGA 1 cut(s) 460
TspRI CASTG 2 cut(s) 504, 771
VneI GTGCAC 1 cut(s) 443
VpaK11BI GGWCC 2 cut(s) 178, 367
XagI CCTNNNNNAGG 2 cut(s) 374, 662
XapI RAATTY 2 cut(s) 208, 238
XceI RCATGY 3 cut(s) 467, 675, 913
XspI CTAG 1 cut(s) 288
ZraI GACGTC 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.