Rw2G045190

traB domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011100
Physical Location & Seq
Reverse (-)
72123165 .. 72125387
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G045190.1

Sequence Viewer

Length: 1056 bp
ATGGACCCGGGATCATCGACCGTGCCCGACCCGAATTCGGCCGAGGATTTCGTCCACGTCGAGAATTCCCTGTCGGATAGCTTGTCTGATAGCATCGTCAATGTGGAGGTGCCTAGAGAGGAGGAGGACGACGGCGACGTCGTTTCGACCAGCGCTGCCGCGGCGGAGGAGGAGGAGGACGACCGGGGGAGGAAGGTCCTCCCGGAGGATCTGTCCCGGAGCGTGGTGGTGCTGACGTGTGAGTCCTCCGCCGAGAGCGGCGTTTGCGACGTGCACCTCGTCGGAACGGCGCATGTTTCCGTGGAATCATGCAGAGAAGTCGAAGCAGTGATAAGTTTTTTGAAACCAGAGGTTGTTTTCTTGGAGTTATGCTCCAGCAGAGTAGCGGTACTTAGTCCTCAGAACTTGAAGGTTCCTACAGCGAGAGAAATGATAGATATGTGGAAGAAGAATCACAATGTCTTTGGAATTGTTTACAGCTGGTTCCTTGCCAAGGTTGCAAGTAAGCTTGAGGTGTTTCCTGGTGCTGAGTTTCGTGTAGCATATGATGAAGCGATGAAGTATGGGGGTAAGGTGGTACTTGGTGATCGTCCAGTGCAGATTACTTTGCGAAGGACATGGGCAAAAATGCCACTTTGGCATAAGATAAAACTAATCTACTCCATACTCTTTCAAGCGGTCTTTTTACCCGATCCCGAAGATCTTAATAAAATGCTAAAGGAAATGGATGATGTTGACATGCTGACCCTTGTGATTCAAGAGATGAGTAAGGAGTTCCCAACTCTAATGGAAACGCTTGTACATGAACGAGATCAGTACATGTCGTCCACATTACTAAGAATTGCCCGGGAGCATAAGTCAGTAGTTGCAGTGGTAGGAAAGGGGCACCTCCGAGGAATTAATAAGCACTGGAAGCAGCCTGTTGTGCTGACGGATCTTATGGAAATTCCTTCACAAAAGACCGGTATTTCCACAGTCAAAGTTCTTAAATCTTTTGGTGTAGTTGTTGCTGGGGCTGCCATAATATCTGGAATATATCTTGCATCTAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

351

Amino Acids

38.94

Weight (kDa)

5.25

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TraB_PrgY_gumN PF01963 87 - 306 3e-23 TraB/PrgY/gumN family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011100)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05270 AT2G32340 AT2G32340
fragaria_vesca FvH4_6g43520 FvH4_6g43520
malus_domestica MD09G1105400.v1.1 MD17G1093000.v1.1
prunus_persica Prupe.3G220000_v2.0.a1
pyrus_communis pycom09g02840 pycom17g09060
rosa_chinensis RchiOBHm_Chr2g0160041
rosa_laevigata RLG00000021193
rosa_multiflora Rmu_sc0002023.1_g000016
rosa_roxburghii Rroxscaffold_2G00090070
rosa_rugosa Rorug02G0479900
rosa_samantha Rh2AG546500 Rh2BG559900 Rh2CG529900 Rh2DG568600
rosa_wichuraiana Rw2G045190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 137, 241
AatII GACGTC 1 cut(s) 141
AccB1I GGYRCC 2 cut(s) 109, 885
AccBSI CCGCTC 1 cut(s) 258
AccII CGCG 1 cut(s) 161
AciI CCGC 7 cut(s) 159, 161, 164, 249, 258, 386, 677
AclWI GGATC 4 cut(s) 19, 216, 686, 942
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 3 cut(s) 34, 64, 945
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 4 cut(s) 390, 579, 801, 818
AfeI AGCGCT 1 cut(s) 154
AfiI CCNNNNNNNGG 4 cut(s) 37, 205, 223, 493
AflIII ACRYGT 2 cut(s) 236, 819
AgeI ACCGGT 1 cut(s) 962
AgsI TTSAA 4 cut(s) 343, 409, 674, 758
AjiI CACGTC 3 cut(s) 58, 237, 271
AjnI CCWGG 1 cut(s) 520
AluBI AGCT 3 cut(s) 81, 480, 508
AluI AGCT 3 cut(s) 81, 480, 508
Alw21I GWGCWC 1 cut(s) 276
Alw44I GTGCAC 1 cut(s) 272
AlwI GGATC 4 cut(s) 19, 216, 686, 942
Ama87I CYCGRG 2 cut(s) 7, 846
Aor51HI AGCGCT 1 cut(s) 154
AoxI GGCC 1 cut(s) 39
ApaLI GTGCAC 1 cut(s) 272
ApeKI GCWGC 3 cut(s) 155, 916, 1016
ApoI RAATTY 3 cut(s) 34, 64, 945
AseI ATTAAT 1 cut(s) 900
AsiGI ACCGGT 1 cut(s) 962
AspLEI GCGC 2 cut(s) 155, 292
AspS9I GGNCC 2 cut(s) 4, 196
AsuC2I CCSGG 7 cut(s) 8, 9, 185, 203, 217, 847, 848
AsuHPI GGTGA 1 cut(s) 596
AvaI CYCGRG 2 cut(s) 7, 846
AvaII GGWCC 2 cut(s) 4, 196
BaeGI GKGCMC 3 cut(s) 27, 276, 888
BanI GGYRCC 2 cut(s) 109, 885
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 3 cut(s) 142, 928, 1003
BceAI ACGGC 2 cut(s) 148, 303
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciT130I CCWGG 1 cut(s) 522
BcnI CCSGG 7 cut(s) 8, 9, 185, 203, 217, 847, 848
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 417
BfoI RGCGCY 1 cut(s) 156
BglI GCCNNNNNGGC 1 cut(s) 637
BglII AGATCT 1 cut(s) 700
BisI GCNGC 6 cut(s) 156, 159, 162, 259, 917, 1017
BlsI GCNGC 6 cut(s) 157, 160, 163, 260, 918, 1018
Bme1390I CCNGG 8 cut(s) 8, 9, 185, 203, 217, 522, 847, 848
Bme18I GGWCC 2 cut(s) 4, 196
BmeT110I CYCGRG 2 cut(s) 7, 846
BmgBI CACGTC 3 cut(s) 58, 237, 271
BmgT120I GGNCC 2 cut(s) 4, 196
BmiI GGNNCC 5 cut(s) 6, 111, 414, 485, 887
BmrFI CCNGG 8 cut(s) 8, 9, 185, 203, 217, 522, 847, 848
BmsI GCATC 2 cut(s) 102, 1052
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 1 cut(s) 358
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 7 cut(s) 8, 9, 185, 203, 217, 847, 848
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 8 cut(s) 7, 42, 159, 184, 300, 492, 846, 892
BsaWI WCCGGW 1 cut(s) 962
BsaXI ACNNNNNCTCC 4 cut(s) 197, 227, 842, 872
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 205, 223, 493
Bse118I RCCGGY 1 cut(s) 962
Bse1I ACTGG 2 cut(s) 593, 914
BseBI CCWGG 1 cut(s) 522
BseDI CCNNGG 8 cut(s) 7, 42, 159, 184, 300, 492, 846, 892
BseGI GGATG 1 cut(s) 733
BseLI CCNNNNNNNGG 4 cut(s) 37, 205, 223, 493
BseMII CTCAG 2 cut(s) 413, 519
BseNI ACTGG 2 cut(s) 593, 914
BseRI GAGGAG 5 cut(s) 134, 137, 182, 185, 188
BseSI GKGCMC 3 cut(s) 27, 276, 888
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 3 cut(s) 142, 928, 1003
BseYI CCCAGC 1 cut(s) 1010
BsgI GTGCAG 1 cut(s) 617
Bsh1236I CGCG 1 cut(s) 161
Bsh1285I CGRYCG 3 cut(s) 21, 42, 184
BshFI GGCC 1 cut(s) 41
BshNI GGYRCC 2 cut(s) 109, 885
BshTI ACCGGT 1 cut(s) 962
BsiEI CGRYCG 3 cut(s) 21, 42, 184
BsiHKAI GWGCWC 1 cut(s) 276
BsiHKCI CYCGRG 2 cut(s) 7, 846
BsiSI CCGG 6 cut(s) 8, 184, 203, 217, 847, 963
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 4 cut(s) 37, 205, 223, 493
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 1 cut(s) 41
BsoBI CYCGRG 2 cut(s) 7, 846
Bsp1286I GDGCHC 3 cut(s) 27, 276, 888
Bsp1407I TGTACA 1 cut(s) 799
Bsp143I GATC 7 cut(s) 11, 208, 586, 691, 700, 811, 934
BspACI CCGC 7 cut(s) 159, 161, 164, 249, 258, 386, 677
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 2 cut(s) 412, 520
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 5 cut(s) 6, 111, 414, 485, 887
BspPI GGATC 4 cut(s) 19, 216, 686, 942
BspT107I GGYRCC 2 cut(s) 109, 885
BsrBI CCGCTC 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 962
BsrGI TGTACA 1 cut(s) 799
BsrI ACTGG 2 cut(s) 593, 914
BssAI RCCGGY 1 cut(s) 962
BssECI CCNNGG 8 cut(s) 7, 42, 159, 184, 300, 492, 846, 892
BssMI GATC 7 cut(s) 11, 208, 586, 691, 700, 811, 934
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 492
Bst2UI CCWGG 1 cut(s) 522
Bst4CI ACNGT 2 cut(s) 22, 976
BstACI GRCGYC 1 cut(s) 138
BstAUI TGTACA 1 cut(s) 799
BstDEI CTNAG 5 cut(s) 392, 399, 528, 836, 1047
BstDSI CCRYGG 2 cut(s) 159, 300
BstENI CCTNNNNNAGG 2 cut(s) 203, 491
BstF5I GGATG 1 cut(s) 733
BstFNI CGCG 1 cut(s) 161
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 2 cut(s) 155, 292
BstKTI GATC 7 cut(s) 14, 211, 589, 694, 703, 814, 937
BstMBI GATC 7 cut(s) 11, 208, 586, 691, 700, 811, 934
BstMCI CGRYCG 3 cut(s) 21, 42, 184
BstMWI GCNNNNNNNGC 7 cut(s) 161, 264, 497, 637, 913, 925, 1016
BstNI CCWGG 1 cut(s) 522
BstNSI RCATGY 3 cut(s) 296, 742, 823
BstSCI CCNGG 8 cut(s) 6, 7, 183, 201, 215, 520, 845, 846
BstSFI CTRYAG 1 cut(s) 417
BstSLI GKGCMC 3 cut(s) 27, 276, 888
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 3 cut(s) 142, 928, 1003
BstX2I RGATCY 3 cut(s) 208, 700, 934
BstYI RGATCY 3 cut(s) 208, 700, 934
BstZI CGGCCG 1 cut(s) 39
BsuRI GGCC 1 cut(s) 41
BtgI CCRYGG 2 cut(s) 159, 300
BtgZI GCGATG 1 cut(s) 569
BtrI CACGTC 3 cut(s) 58, 237, 271
BtsCI GGATG 1 cut(s) 733
BtsI GCAGTG 2 cut(s) 333, 876
BtsIMutI CAGTG 4 cut(s) 333, 600, 876, 907
CfoI GCGC 2 cut(s) 155, 292
Cfr10I RCCGGY 1 cut(s) 962
Cfr13I GGNCC 2 cut(s) 4, 196
Cfr42I CCGCGG 1 cut(s) 162
Cfr9I CCCGGG 2 cut(s) 7, 846
Csp6I GTAC 4 cut(s) 389, 578, 800, 817
CspAI ACCGGT 1 cut(s) 962
CviAII CATG 6 cut(s) 293, 309, 618, 739, 803, 820
CviJI RGCY 6 cut(s) 41, 81, 480, 508, 919, 1016
CviKI_1 RGCY 6 cut(s) 41, 81, 480, 508, 919, 1016
CviQI GTAC 4 cut(s) 389, 578, 800, 817
DdeI CTNAG 5 cut(s) 392, 399, 528, 836, 1047
DpnI GATC 7 cut(s) 13, 210, 588, 693, 702, 813, 936
DpnII GATC 7 cut(s) 11, 208, 586, 691, 700, 811, 934
DrdI GACNNNNNNGTC 2 cut(s) 137, 241
DseDI GACNNNNNNGTC 2 cut(s) 137, 241
EaeI YGGCCR 1 cut(s) 39
EagI CGGCCG 1 cut(s) 39
EciI GGCGGA 2 cut(s) 179, 238
EclXI CGGCCG 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 492
Eco47I GGWCC 2 cut(s) 4, 196
Eco47III AGCGCT 1 cut(s) 154
Eco52I CGGCCG 1 cut(s) 39
Eco88I CYCGRG 2 cut(s) 7, 846
EcoNI CCTNNNNNAGG 2 cut(s) 203, 491
EcoO109I RGGNCCY 1 cut(s) 196
EcoRI GAATTC 2 cut(s) 34, 64
EcoRII CCWGG 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 492
FaeI CATG 6 cut(s) 296, 312, 621, 742, 806, 823
FaqI GGGAC 1 cut(s) 199
FatI CATG 6 cut(s) 292, 308, 617, 738, 802, 819
FauNDI CATATG 1 cut(s) 544
Fnu4HI GCNGC 6 cut(s) 156, 159, 162, 259, 917, 1017
FokI GGATG 1 cut(s) 740
Fsp4HI GCNGC 6 cut(s) 156, 159, 162, 259, 917, 1017
FspBI CTAG 1 cut(s) 114
GlaI GCGC 2 cut(s) 154, 291
GluI GCNGC 6 cut(s) 156, 159, 162, 259, 917, 1017
GsaI CCCAGC 1 cut(s) 1014
GsuI CTGGAG 1 cut(s) 358
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 1 cut(s) 41
HapII CCGG 6 cut(s) 8, 184, 203, 217, 847, 963
HhaI GCGC 2 cut(s) 155, 292
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 6 cut(s) 296, 312, 621, 742, 806, 823
Hin6I GCGC 2 cut(s) 153, 290
HinP1I GCGC 2 cut(s) 153, 290
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 4 cut(s) 242, 305, 451, 754
HpaII CCGG 6 cut(s) 8, 184, 203, 217, 847, 963
HphI GGTGA 1 cut(s) 596
Hpy166II GTNNAC 5 cut(s) 55, 274, 475, 736, 828
Hpy188I TCNGA 5 cut(s) 76, 88, 284, 402, 893
Hpy188III TCNNGA 4 cut(s) 61, 695, 758, 1029
Hpy8I GTNNAC 5 cut(s) 55, 274, 475, 736, 828
Hpy99I CGWCG 6 cut(s) 62, 134, 140, 143, 272, 284
HpyAV CCTTC 4 cut(s) 187, 403, 606, 960
HpyCH4III ACNGT 2 cut(s) 22, 976
HpyCH4IV ACGT 4 cut(s) 57, 138, 236, 270
HpyCH4V TGCA 6 cut(s) 274, 312, 500, 598, 869, 1043
HpyF10VI GCNNNNNNNGC 7 cut(s) 161, 264, 497, 637, 913, 925, 1016
HpyF3I CTNAG 5 cut(s) 392, 399, 528, 836, 1047
HpySE526I ACGT 4 cut(s) 57, 138, 236, 270
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 6 cut(s) 296, 312, 621, 742, 806, 823
HspAI GCGC 2 cut(s) 153, 290
KspI CCGCGG 1 cut(s) 162
Kzo9I GATC 7 cut(s) 11, 208, 586, 691, 700, 811, 934
LmnI GCTCC 3 cut(s) 219, 377, 850
Lsp1109I GCAGC 3 cut(s) 142, 928, 1003
LweI GCATC 2 cut(s) 102, 1052
MaeI CTAG 1 cut(s) 114
MaeII ACGT 4 cut(s) 57, 138, 236, 270
MalI GATC 7 cut(s) 13, 210, 588, 693, 702, 813, 936
MbiI CCGCTC 1 cut(s) 258
MboI GATC 7 cut(s) 11, 208, 586, 691, 700, 811, 934
MboII GAAGA 3 cut(s) 457, 460, 710
MflI RGATCY 3 cut(s) 208, 700, 934
MhlI GDGCHC 3 cut(s) 27, 276, 888
MluCI AATT 6 cut(s) 34, 64, 468, 840, 897, 945
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 2 cut(s) 54, 262
MseI TTAA 3 cut(s) 705, 900, 987
MspA1I CMGCKG 2 cut(s) 161, 480
MspI CCGG 6 cut(s) 8, 184, 203, 217, 847, 963
MspR9I CCNGG 8 cut(s) 8, 9, 185, 203, 217, 522, 847, 848
MvaI CCWGG 1 cut(s) 522
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 7 cut(s) 161, 264, 497, 637, 913, 925, 1016
NciI CCSGG 7 cut(s) 8, 9, 185, 203, 217, 847, 848
NdeI CATATG 1 cut(s) 544
NdeII GATC 7 cut(s) 11, 208, 586, 691, 700, 811, 934
NlaIII CATG 6 cut(s) 296, 312, 621, 742, 806, 823
NlaIV GGNNCC 5 cut(s) 6, 111, 414, 485, 887
NmeAIII GCCGAG 2 cut(s) 67, 277
NspI RCATGY 3 cut(s) 296, 742, 823
PciI ACATGT 1 cut(s) 819
PcsI WCGNNNNNNNCGW 4 cut(s) 57, 135, 138, 276
PfeI GAWTC 3 cut(s) 305, 451, 754
PfoI TCCNGGA 2 cut(s) 201, 215
PinAI ACCGGT 1 cut(s) 962
PkrI GCNGC 6 cut(s) 157, 160, 163, 260, 918, 1018
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PpuMI RGGWCCY 1 cut(s) 196
PscI ACATGT 1 cut(s) 819
PshBI ATTAAT 1 cut(s) 900
Psp5II RGGWCCY 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 520
PspFI CCCAGC 1 cut(s) 1010
PspGI CCWGG 1 cut(s) 520
PspN4I GGNNCC 5 cut(s) 6, 111, 414, 485, 887
PspPI GGNCC 2 cut(s) 4, 196
PspPPI RGGWCCY 1 cut(s) 196
PsuI RGATCY 3 cut(s) 208, 700, 934
PvuII CAGCTG 1 cut(s) 480
RsaI GTAC 4 cut(s) 390, 579, 801, 818
RsaNI GTAC 4 cut(s) 389, 578, 800, 817
SacII CCGCGG 1 cut(s) 162
SaqAI TTAA 3 cut(s) 705, 900, 987
SatI GCNGC 6 cut(s) 156, 159, 162, 259, 917, 1017
Sau3AI GATC 7 cut(s) 11, 208, 586, 691, 700, 811, 934
Sau96I GGNCC 2 cut(s) 4, 196
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 8 cut(s) 8, 9, 185, 203, 217, 522, 847, 848
SduI GDGCHC 3 cut(s) 27, 276, 888
SfaNI GCATC 2 cut(s) 102, 1052
SfcI CTRYAG 1 cut(s) 417
Sfr303I CCGCGG 1 cut(s) 162
SgrBI CCGCGG 1 cut(s) 162
SinI GGWCC 2 cut(s) 4, 196
SmaI CCCGGG 2 cut(s) 9, 848
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 6 cut(s) 34, 64, 468, 840, 897, 945
SsiI CCGC 7 cut(s) 159, 161, 164, 249, 258, 386, 677
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 8 cut(s) 6, 7, 183, 201, 215, 520, 845, 846
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 2 cut(s) 22, 976
TaiI ACGT 4 cut(s) 60, 141, 239, 273
TaqI TCGA 4 cut(s) 17, 60, 146, 321
TasI AATT 6 cut(s) 34, 64, 468, 840, 897, 945
TatI WGTACW 2 cut(s) 799, 816
TauI GCSGC 3 cut(s) 161, 164, 261
TfiI GAWTC 3 cut(s) 305, 451, 754
Tru1I TTAA 3 cut(s) 705, 900, 987
Tru9I TTAA 3 cut(s) 705, 900, 987
TscAI CASTG 4 cut(s) 333, 600, 876, 914
TseI GCWGC 3 cut(s) 155, 916, 1016
TspDTI ATGAA 3 cut(s) 564, 572, 819
TspGWI ACGGA 2 cut(s) 289, 947
TspMI CCCGGG 2 cut(s) 7, 846
TspRI CASTG 4 cut(s) 333, 600, 876, 914
VneI GTGCAC 1 cut(s) 272
VpaK11BI GGWCC 2 cut(s) 4, 196
VspI ATTAAT 1 cut(s) 900
XagI CCTNNNNNAGG 2 cut(s) 203, 491
XapI RAATTY 3 cut(s) 34, 64, 945
XceI RCATGY 3 cut(s) 296, 742, 823
XmaI CCCGGG 2 cut(s) 7, 846
XspI CTAG 1 cut(s) 114
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.