Rroxscaffold_2G00090070

traB domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011100
Physical Location & Seq
Forward (+)
11921044 .. 11923692
2649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00090070.1

Sequence Viewer

Length: 1215 bp
ATGAATCGCTGGACTCGACTCTACTCGCTCACTTCTCCCCTTAACGCCCTTGCTTTTTTTGCTCCTCGATCGCGAAAAGCACATTTCTTGACCCTACGAAACCGAAGATTTACGGCATCTGCCACCGCCGGCGGTCACGACCGGCTACGGCGCGCGATGGACCCGGGATCATCGACCGTGCCCGACCCGAATTCGGCCGAGGATTTCGTCCACGTCGAGAATTCCCTGTCGGATAGCTTGTCTGATAGCATCGTCAATGTGGAGGTGCCTACTAGAGAGGAGGAGGACGACGGCGACGTCGTTTCGACCAGCGCTGCCGCGGCGGAGGAGGACGACGACCGGGGGAGGAAGGTCCTCCCGGAGGATCTGTCCCGGAGCGTGGTGGTGCTGACGTGTGAGTCCTCCGCCGCCGAGGGCGGCGTTTGCGACGTGCACCTCGTCGGAACGGCGCATGTTTCGGTGGAATCATGCAGAGAAGTCGAAGCAGTGATAAGTTTTTTGAAACCAGAGGTTGTTTTCTTGGAGTTATGCTCCAGCAGAGTAGCGGTACTTAGTCCTCAGAACTTGAAGGTTCCTACAGCGAGAGAAATGATAGATATGTGGAAGAAGAATCACAATGTCTTTGGAATTGTTTACAGCTGGTTCCTTGCCAAGGTTGCAAGTAAGCTTGAGGTGTTTCCTGGTGCTGAGTTTCGTGTAGCATATGATGAAGCGATGAAGTATGGGGGTAAGGTGGTACTTGGTGATCGTCCAGTCCAGATTACTTTGCGAAGGACATGGGCAAAAATGCCACTTTGGCATAAGATAAAACTAATCTACTCCATACTCTTTCAAGCGGTCTTTTTACCAGATCCCGAAGATCTTAATAAAATGCTAAAGGAAATGGATGATGTTGACATGCTGACCCTTGTGATTCAAGAGATGAGTAAGGAGTTCCCAACTCTCATGGAAACGCTTGTACATGAACGAGATCAGTACATGTCATCCACATTACTAAGAATTGCCCGGGAGCATAAGTCAGTAGTTGCAGTGGTAGGGAAGGGGCACCTCCGAGGAATTAATAAGCACTGGAAGCAGCCTGTTGTGGTGACGGATCTTATGGAAATTCCTTCACAAAAGACCGGTATTTCCACAGTCAAAGTTCTTAAATCTTTTGGTGTAGTTGTTGCTGGGGCCGCCATAATATCTGGAATATATCTTGCATCTAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

404

Amino Acids

44.94

Weight (kDa)

6.62

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TraB_PrgY_gumN PF01963 140 - 359 4.2e-23 TraB/PrgY/gumN family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011100)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05270 AT2G32340 AT2G32340
fragaria_vesca FvH4_6g43520 FvH4_6g43520
malus_domestica MD09G1105400.v1.1 MD17G1093000.v1.1
prunus_persica Prupe.3G220000_v2.0.a1
pyrus_communis pycom09g02840 pycom17g09060
rosa_chinensis RchiOBHm_Chr2g0160041
rosa_laevigata RLG00000021193
rosa_multiflora Rmu_sc0002023.1_g000016
rosa_roxburghii Rroxscaffold_2G00090070
rosa_rugosa Rorug02G0479900
rosa_samantha Rh2AG546500 Rh2BG559900 Rh2CG529900 Rh2DG568600
rosa_wichuraiana Rw2G045190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 296, 397
AatII GACGTC 1 cut(s) 300
AccB1I GGYRCC 2 cut(s) 265, 1044
AccII CGCG 4 cut(s) 73, 153, 155, 320
AclWI GGATC 4 cut(s) 175, 372, 845, 1101
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 3 cut(s) 190, 220, 1104
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 4 cut(s) 549, 738, 960, 977
AfeI AGCGCT 1 cut(s) 313
AfiI CCNNNNNNNGG 4 cut(s) 193, 361, 379, 652
AflIII ACRYGT 2 cut(s) 392, 978
AgeI ACCGGT 1 cut(s) 1121
AgsI TTSAA 4 cut(s) 502, 568, 833, 917
AjiI CACGTC 3 cut(s) 214, 393, 430
AjnI CCWGG 1 cut(s) 679
AluBI AGCT 3 cut(s) 237, 639, 667
AluI AGCT 3 cut(s) 237, 639, 667
Alw21I GWGCWC 1 cut(s) 435
Alw44I GTGCAC 1 cut(s) 431
AlwI GGATC 4 cut(s) 175, 372, 845, 1101
Ama87I CYCGRG 2 cut(s) 163, 1005
Aor51HI AGCGCT 1 cut(s) 313
AoxI GGCC 2 cut(s) 195, 1173
ApaLI GTGCAC 1 cut(s) 431
ApeKI GCWGC 2 cut(s) 314, 1075
ApoI RAATTY 3 cut(s) 190, 220, 1104
AseI ATTAAT 1 cut(s) 1059
AsiGI ACCGGT 1 cut(s) 1121
AspLEI GCGC 4 cut(s) 153, 155, 314, 451
AspS9I GGNCC 3 cut(s) 160, 352, 1173
AsuC2I CCSGG 7 cut(s) 164, 165, 341, 359, 373, 1006, 1007
AsuHPI GGTGA 2 cut(s) 755, 1099
AvaI CYCGRG 2 cut(s) 163, 1005
AvaII GGWCC 2 cut(s) 160, 352
BaeGI GKGCMC 3 cut(s) 183, 435, 1047
BanI GGYRCC 2 cut(s) 265, 1044
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 2 cut(s) 301, 1087
BccI CCATC 1 cut(s) 151
BceAI ACGGC 4 cut(s) 129, 164, 307, 462
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BciT130I CCWGG 1 cut(s) 681
BcnI CCSGG 7 cut(s) 164, 165, 341, 359, 373, 1006, 1007
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 576
BfoI RGCGCY 1 cut(s) 315
BglI GCCNNNNNGGC 1 cut(s) 796
BglII AGATCT 1 cut(s) 859
BisI GCNGC 7 cut(s) 315, 318, 321, 408, 418, 1076, 1176
BlsI GCNGC 7 cut(s) 316, 319, 322, 409, 419, 1077, 1177
Bme1390I CCNGG 8 cut(s) 164, 165, 341, 359, 373, 681, 1006, 1007
Bme18I GGWCC 2 cut(s) 160, 352
BmeT110I CYCGRG 2 cut(s) 163, 1005
BmgBI CACGTC 3 cut(s) 214, 393, 430
BmgT120I GGNCC 3 cut(s) 160, 352, 1173
BmiI GGNNCC 6 cut(s) 162, 267, 573, 644, 1046, 1174
BmrFI CCNGG 8 cut(s) 164, 165, 341, 359, 373, 681, 1006, 1007
BmsI GCATC 3 cut(s) 125, 258, 1211
BplI GAGNNNNNCTC 2 cut(s) 515, 547
BpmI CTGGAG 1 cut(s) 517
BpuEI CTTGAG 1 cut(s) 689
BpuMI CCSGG 7 cut(s) 164, 165, 341, 359, 373, 1006, 1007
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 8 cut(s) 163, 198, 318, 340, 411, 651, 1005, 1051
BsaWI WCCGGW 1 cut(s) 1121
BsaXI ACNNNNNCTCC 4 cut(s) 353, 383, 1001, 1031
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 361, 379, 652
Bse118I RCCGGY 3 cut(s) 128, 141, 1121
Bse1I ACTGG 2 cut(s) 752, 1073
BseBI CCWGG 1 cut(s) 681
BseDI CCNNGG 8 cut(s) 163, 198, 318, 340, 411, 651, 1005, 1051
BseGI GGATG 2 cut(s) 892, 983
BseLI CCNNNNNNNGG 4 cut(s) 193, 361, 379, 652
BseMII CTCAG 2 cut(s) 572, 678
BseNI ACTGG 2 cut(s) 752, 1073
BsePI GCGCGC 1 cut(s) 151
BseRI GAGGAG 4 cut(s) 54, 293, 296, 341
BseSI GKGCMC 3 cut(s) 183, 435, 1047
BseX3I CGGCCG 1 cut(s) 195
BseXI GCAGC 2 cut(s) 301, 1087
BseYI CCCAGC 1 cut(s) 1169
Bsh1236I CGCG 4 cut(s) 73, 153, 155, 320
Bsh1285I CGRYCG 5 cut(s) 71, 142, 177, 198, 340
BshFI GGCC 2 cut(s) 197, 1175
BshNI GGYRCC 2 cut(s) 265, 1044
BshTI ACCGGT 1 cut(s) 1121
BsiEI CGRYCG 5 cut(s) 71, 142, 177, 198, 340
BsiHKAI GWGCWC 1 cut(s) 435
BsiHKCI CYCGRG 2 cut(s) 163, 1005
BsiSI CCGG 8 cut(s) 129, 142, 164, 340, 359, 373, 1006, 1122
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 4 cut(s) 193, 361, 379, 652
BsmFI GGGAC 1 cut(s) 355
BsnI GGCC 2 cut(s) 197, 1175
BsoBI CYCGRG 2 cut(s) 163, 1005
Bsp1286I GDGCHC 3 cut(s) 183, 435, 1047
Bsp1407I TGTACA 1 cut(s) 958
Bsp143I GATC 8 cut(s) 68, 167, 364, 745, 850, 859, 970, 1093
Bsp68I TCGCGA 1 cut(s) 73
BspANI GGCC 2 cut(s) 197, 1175
BspCNI CTCAG 2 cut(s) 571, 679
BspFNI CGCG 4 cut(s) 73, 153, 155, 320
BspLI GGNNCC 6 cut(s) 162, 267, 573, 644, 1046, 1174
BspPI GGATC 4 cut(s) 175, 372, 845, 1101
BspT107I GGYRCC 2 cut(s) 265, 1044
BsrFI RCCGGY 3 cut(s) 128, 141, 1121
BsrGI TGTACA 1 cut(s) 958
BsrI ACTGG 2 cut(s) 752, 1073
BssAI RCCGGY 3 cut(s) 128, 141, 1121
BssECI CCNNGG 8 cut(s) 163, 198, 318, 340, 411, 651, 1005, 1051
BssHII GCGCGC 1 cut(s) 151
BssMI GATC 8 cut(s) 68, 167, 364, 745, 850, 859, 970, 1093
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 651
Bst2UI CCWGG 1 cut(s) 681
Bst4CI ACNGT 2 cut(s) 178, 1135
BstACI GRCGYC 1 cut(s) 297
BstAUI TGTACA 1 cut(s) 958
BstC8I GCNNGC 2 cut(s) 130, 153
BstDEI CTNAG 5 cut(s) 551, 558, 687, 995, 1206
BstDSI CCRYGG 1 cut(s) 318
BstENI CCTNNNNNAGG 2 cut(s) 359, 650
BstF5I GGATG 2 cut(s) 892, 983
BstFNI CGCG 4 cut(s) 73, 153, 155, 320
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 4 cut(s) 153, 155, 314, 451
BstKTI GATC 8 cut(s) 71, 170, 367, 748, 853, 862, 973, 1096
BstMBI GATC 8 cut(s) 68, 167, 364, 745, 850, 859, 970, 1093
BstMCI CGRYCG 5 cut(s) 71, 142, 177, 198, 340
BstMWI GCNNNNNNNGC 7 cut(s) 59, 320, 423, 656, 796, 1072, 1175
BstNI CCWGG 1 cut(s) 681
BstNSI RCATGY 3 cut(s) 455, 901, 982
BstSCI CCNGG 8 cut(s) 162, 163, 339, 357, 371, 679, 1004, 1005
BstSFI CTRYAG 1 cut(s) 576
BstSLI GKGCMC 3 cut(s) 183, 435, 1047
BstUI CGCG 4 cut(s) 73, 153, 155, 320
BstV1I GCAGC 2 cut(s) 301, 1087
BstX2I RGATCY 4 cut(s) 364, 850, 859, 1093
BstYI RGATCY 4 cut(s) 364, 850, 859, 1093
BstZI CGGCCG 1 cut(s) 195
BsuRI GGCC 2 cut(s) 197, 1175
BtgI CCRYGG 1 cut(s) 318
BtgZI GCGATG 2 cut(s) 170, 728
BtrI CACGTC 3 cut(s) 214, 393, 430
BtsCI GGATG 2 cut(s) 892, 983
BtsI GCAGTG 2 cut(s) 492, 1035
BtsIMutI CAGTG 3 cut(s) 492, 1035, 1066
BtuMI TCGCGA 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 130, 153
CfoI GCGC 4 cut(s) 153, 155, 314, 451
Cfr10I RCCGGY 3 cut(s) 128, 141, 1121
Cfr13I GGNCC 3 cut(s) 160, 352, 1173
Cfr42I CCGCGG 1 cut(s) 321
Cfr9I CCCGGG 2 cut(s) 163, 1005
Csp6I GTAC 4 cut(s) 548, 737, 959, 976
CspAI ACCGGT 1 cut(s) 1121
CviAII CATG 7 cut(s) 452, 468, 777, 898, 946, 962, 979
CviJI RGCY 7 cut(s) 145, 197, 237, 639, 667, 1078, 1175
CviKI_1 RGCY 7 cut(s) 145, 197, 237, 639, 667, 1078, 1175
CviQI GTAC 4 cut(s) 548, 737, 959, 976
DdeI CTNAG 5 cut(s) 551, 558, 687, 995, 1206
DpnI GATC 8 cut(s) 70, 169, 366, 747, 852, 861, 972, 1095
DpnII GATC 8 cut(s) 68, 167, 364, 745, 850, 859, 970, 1093
DrdI GACNNNNNNGTC 2 cut(s) 296, 397
DseDI GACNNNNNNGTC 2 cut(s) 296, 397
EaeI YGGCCR 1 cut(s) 195
EagI CGGCCG 1 cut(s) 195
EciI GGCGGA 2 cut(s) 338, 394
EclXI CGGCCG 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 651
Eco47I GGWCC 2 cut(s) 160, 352
Eco47III AGCGCT 1 cut(s) 313
Eco52I CGGCCG 1 cut(s) 195
Eco88I CYCGRG 2 cut(s) 163, 1005
EcoNI CCTNNNNNAGG 2 cut(s) 359, 650
EcoO109I RGGNCCY 1 cut(s) 352
EcoRI GAATTC 2 cut(s) 190, 220
EcoRII CCWGG 1 cut(s) 679
EcoT14I CCWWGG 1 cut(s) 651
ErhI CCWWGG 1 cut(s) 651
FaeI CATG 7 cut(s) 455, 471, 780, 901, 949, 965, 982
FaqI GGGAC 1 cut(s) 355
FatI CATG 7 cut(s) 451, 467, 776, 897, 945, 961, 978
FauNDI CATATG 1 cut(s) 703
Fnu4HI GCNGC 7 cut(s) 315, 318, 321, 408, 418, 1076, 1176
FokI GGATG 2 cut(s) 899, 970
Fsp4HI GCNGC 7 cut(s) 315, 318, 321, 408, 418, 1076, 1176
FspBI CTAG 1 cut(s) 273
GlaI GCGC 4 cut(s) 152, 154, 313, 450
GluI GCNGC 7 cut(s) 315, 318, 321, 408, 418, 1076, 1176
GsaI CCCAGC 1 cut(s) 1173
GsuI CTGGAG 1 cut(s) 517
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 2 cut(s) 197, 1175
HapII CCGG 8 cut(s) 129, 142, 164, 340, 359, 373, 1006, 1122
HhaI GCGC 4 cut(s) 153, 155, 314, 451
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 7 cut(s) 455, 471, 780, 901, 949, 965, 982
Hin6I GCGC 4 cut(s) 151, 153, 312, 449
HinP1I GCGC 4 cut(s) 151, 153, 312, 449
HincII GTYRAC 1 cut(s) 895
HindII GTYRAC 1 cut(s) 895
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 7 cut(s) 4, 13, 18, 398, 464, 610, 913
HpaII CCGG 8 cut(s) 129, 142, 164, 340, 359, 373, 1006, 1122
HphI GGTGA 2 cut(s) 755, 1099
Hpy166II GTNNAC 4 cut(s) 211, 433, 634, 895
Hpy188I TCNGA 5 cut(s) 232, 244, 443, 561, 1052
Hpy188III TCNNGA 8 cut(s) 72, 88, 137, 217, 757, 854, 917, 1188
Hpy8I GTNNAC 4 cut(s) 211, 433, 634, 895
Hpy99I CGWCG 7 cut(s) 218, 293, 299, 302, 338, 431, 443
HpyAV CCTTC 5 cut(s) 343, 562, 765, 1033, 1119
HpyCH4III ACNGT 2 cut(s) 178, 1135
HpyCH4IV ACGT 4 cut(s) 213, 297, 392, 429
HpyCH4V TGCA 5 cut(s) 433, 471, 659, 1028, 1202
HpyF10VI GCNNNNNNNGC 7 cut(s) 59, 320, 423, 656, 796, 1072, 1175
HpyF3I CTNAG 5 cut(s) 551, 558, 687, 995, 1206
HpySE526I ACGT 4 cut(s) 213, 297, 392, 429
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 7 cut(s) 455, 471, 780, 901, 949, 965, 982
HspAI GCGC 4 cut(s) 151, 153, 312, 449
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
KspI CCGCGG 1 cut(s) 321
Kzo9I GATC 8 cut(s) 68, 167, 364, 745, 850, 859, 970, 1093
LmnI GCTCC 4 cut(s) 67, 375, 536, 1009
Lsp1109I GCAGC 2 cut(s) 301, 1087
LweI GCATC 3 cut(s) 125, 258, 1211
MaeI CTAG 1 cut(s) 273
MaeII ACGT 4 cut(s) 213, 297, 392, 429
MaeIII GTNAC 2 cut(s) 134, 1087
MalI GATC 8 cut(s) 70, 169, 366, 747, 852, 861, 972, 1095
MboI GATC 8 cut(s) 68, 167, 364, 745, 850, 859, 970, 1093
MboII GAAGA 4 cut(s) 117, 616, 619, 869
MflI RGATCY 4 cut(s) 364, 850, 859, 1093
MhlI GDGCHC 3 cut(s) 183, 435, 1047
MluCI AATT 6 cut(s) 190, 220, 627, 999, 1056, 1104
MlyI GAGTC 3 cut(s) 7, 12, 407
MmeI TCCRAC 2 cut(s) 210, 421
MreI CGCCGGCG 1 cut(s) 128
MroNI GCCGGC 1 cut(s) 128
MseI TTAA 4 cut(s) 42, 864, 1059, 1146
MspA1I CMGCKG 2 cut(s) 320, 639
MspI CCGG 8 cut(s) 129, 142, 164, 340, 359, 373, 1006, 1122
MspR9I CCNGG 8 cut(s) 164, 165, 341, 359, 373, 681, 1006, 1007
MvaI CCWGG 1 cut(s) 681
MvnI CGCG 4 cut(s) 73, 153, 155, 320
MwoI GCNNNNNNNGC 7 cut(s) 59, 320, 423, 656, 796, 1072, 1175
NaeI GCCGGC 1 cut(s) 130
NciI CCSGG 7 cut(s) 164, 165, 341, 359, 373, 1006, 1007
NdeI CATATG 1 cut(s) 703
NdeII GATC 8 cut(s) 68, 167, 364, 745, 850, 859, 970, 1093
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 7 cut(s) 455, 471, 780, 901, 949, 965, 982
NlaIV GGNNCC 6 cut(s) 162, 267, 573, 644, 1046, 1174
NmeAIII GCCGAG 2 cut(s) 223, 436
NmuCI GTSAC 2 cut(s) 134, 1087
NruI TCGCGA 1 cut(s) 73
NspI RCATGY 3 cut(s) 455, 901, 982
PauI GCGCGC 1 cut(s) 151
PciI ACATGT 1 cut(s) 978
PcsI WCGNNNNNNNCGW 5 cut(s) 13, 213, 294, 297, 435
PdiI GCCGGC 1 cut(s) 130
PfeI GAWTC 4 cut(s) 4, 464, 610, 913
PfoI TCCNGGA 2 cut(s) 357, 371
PinAI ACCGGT 1 cut(s) 1121
PkrI GCNGC 7 cut(s) 316, 319, 322, 409, 419, 1077, 1177
Ple19I CGATCG 1 cut(s) 71
PleI GAGTC 3 cut(s) 7, 12, 406
PpsI GAGTC 3 cut(s) 7, 12, 406
PpuMI RGGWCCY 1 cut(s) 352
PscI ACATGT 1 cut(s) 978
PshBI ATTAAT 1 cut(s) 1059
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 679
PspFI CCCAGC 1 cut(s) 1169
PspGI CCWGG 1 cut(s) 679
PspN4I GGNNCC 6 cut(s) 162, 267, 573, 644, 1046, 1174
PspPI GGNCC 3 cut(s) 160, 352, 1173
PspPPI RGGWCCY 1 cut(s) 352
PsuI RGATCY 4 cut(s) 364, 850, 859, 1093
PteI GCGCGC 1 cut(s) 151
PvuI CGATCG 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 639
RruI TCGCGA 1 cut(s) 73
RsaI GTAC 4 cut(s) 549, 738, 960, 977
RsaNI GTAC 4 cut(s) 548, 737, 959, 976
SacII CCGCGG 1 cut(s) 321
SaqAI TTAA 4 cut(s) 42, 864, 1059, 1146
SatI GCNGC 7 cut(s) 315, 318, 321, 408, 418, 1076, 1176
Sau3AI GATC 8 cut(s) 68, 167, 364, 745, 850, 859, 970, 1093
Sau96I GGNCC 3 cut(s) 160, 352, 1173
SchI GAGTC 3 cut(s) 7, 12, 407
ScrFI CCNGG 8 cut(s) 164, 165, 341, 359, 373, 681, 1006, 1007
SduI GDGCHC 3 cut(s) 183, 435, 1047
SfaNI GCATC 3 cut(s) 125, 258, 1211
SfcI CTRYAG 1 cut(s) 576
Sfr303I CCGCGG 1 cut(s) 321
SgrAI CRCCGGYG 1 cut(s) 128
SgrBI CCGCGG 1 cut(s) 321
SinI GGWCC 2 cut(s) 160, 352
SmaI CCCGGG 2 cut(s) 165, 1007
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
Sse9I AATT 6 cut(s) 190, 220, 627, 999, 1056, 1104
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 8 cut(s) 162, 163, 339, 357, 371, 679, 1004, 1005
StyI CCWWGG 1 cut(s) 651
TaaI ACNGT 2 cut(s) 178, 1135
TaiI ACGT 4 cut(s) 216, 300, 395, 432
TaqI TCGA 6 cut(s) 16, 67, 173, 216, 305, 480
TasI AATT 6 cut(s) 190, 220, 627, 999, 1056, 1104
TatI WGTACW 2 cut(s) 958, 975
TauI GCSGC 5 cut(s) 320, 323, 410, 420, 1178
TfiI GAWTC 4 cut(s) 4, 464, 610, 913
Tru1I TTAA 4 cut(s) 42, 864, 1059, 1146
Tru9I TTAA 4 cut(s) 42, 864, 1059, 1146
TscAI CASTG 3 cut(s) 492, 1035, 1073
TseFI GTSAC 2 cut(s) 134, 1087
TseI GCWGC 2 cut(s) 314, 1075
Tsp45I GTSAC 2 cut(s) 134, 1087
TspDTI ATGAA 4 cut(s) 17, 723, 731, 978
TspGWI ACGGA 1 cut(s) 1106
TspMI CCCGGG 2 cut(s) 163, 1005
TspRI CASTG 3 cut(s) 492, 1035, 1073
VneI GTGCAC 1 cut(s) 431
VpaK11BI GGWCC 2 cut(s) 160, 352
VspI ATTAAT 1 cut(s) 1059
XagI CCTNNNNNAGG 2 cut(s) 359, 650
XapI RAATTY 3 cut(s) 190, 220, 1104
XceI RCATGY 3 cut(s) 455, 901, 982
XmaI CCCGGG 2 cut(s) 163, 1005
XspI CTAG 1 cut(s) 273
ZraI GACGTC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.