AT1G06240

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014019
Physical Location & Seq
Forward (+)
1911095 .. 1913295
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06240.1

Sequence Viewer

Length: 1152 bp
ATGTTGATTCATCATCTTCGTCCTTTTTCAACTGCTTCTCTGTCTCCTCGTTCTCTCACCATTTCCACTGCTCTCTCTTCTTCTTCGACGAAGCAACAACACAAGCTTTGGTCTGGTCTCGAAAACTGGAGAAAGAGTCCTGTCAACGACCTCCGTCTCTGGGGTCCTACTGGTCCTCTCCTTCCTTCTTCTTCTGACTCCATCTCCGCCGACTTCTACGGTCTCGTCTCAGCTGCATCTTCTCTCGCTGATCTCGGAGCACTCGTTCTCTCAACCTCCGATCCTCTCTCCAAATCTCATATCTCCCATTTAGCTTTCTCTCGTTGGCGCCGTGAGAATCTCCCTGTTGGCTCAATCTCTCATCTTCCTTCTTCTCCAGCTCGTCCTCCCAAACCTCTCCTCGTTGCGACCAACCAAGTCCCAAATCCGAAAGACTCAAACCTTCCTCTCAATGCTCATATGCTTCATAATCTAGCTCATGTTGAGCTTAATGCTATTGATTTGGCTTGGGATACTGTTGCTCGTTTCTCTCCTTTCTTCGACCTTTTGGGTCACAACTTCTTTGATGACTTTGCTCATGTTGCTGATGATGAGAGTCGCCATTTCTTGTGGTGTTCCCAGAGACTCGCTGAGCTTGGTTTCAAGTATGGAGATATACCGGCTAATAATTTGCTCATGAGGGAATGCGAGAAAACTTCCAACAATGTCGCTGCTCGCTTGGCTTGTATCCCTCTTGTTCAGGAGGCTAGAGGACTTGATGCTGGACCTAGGTTGGTCAAACGGCTGACAGGATTTGGAGATAACAGGACTTCGAAAATCGTGGCGAAGATCGCTGAGGAGGAAGTTGCACATGTAGCTGTTGGTGTAGACTGGTTTCTCTCTGTGTGTCAAAAGATGAACCGTGCTCCTTCCCCTACATTTAAAGATCTGATCAAAGAGTATGGTGTCGAGTTAAGGGGCCCTTTCAACCACTCAGCTCGGGAGGTAGCTGGCATTCCGCGAGATTGGTATGATCCATCATGTGGCACGGAAGTGGATAAAGGCGATAACGAACAGGGTGACAAGGAGCAACTCTCTGCAGTTTACGATAGGCTCACTCACATTATCTCAATGGAGAGTGAGAATTCAAGTCTTGAAAAGCCTGCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

383

Amino Acids

42.27

Weight (kDa)

6.43

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF455 PF04305 92 - 338 3.9e-81 Protein of unknown function (DUF455)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014019)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06240
fragaria_vesca FvH4_6g27080 FvH4_6g27080
malus_domestica MD09G1240300.v1.1
prunus_persica Prupe.3G124300_v2.0.a1
pyrus_communis pycom09g15890
rosa_chinensis RchiOBHm_Chr2g0129041
rosa_laevigata RLG00000019046
rosa_multiflora Rmu_co8451771.1_g000001
rosa_roxburghii Rroxscaffold_2G00114940
rosa_rugosa Rorug02G0283600 Rorug02G0283700
rosa_samantha Rh2AG336100 Rh2BG344100 Rh2CG323000 Rh2DG360700
rosa_wichuraiana Rw2G027250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 327
AccB7I CCANNNNNTGG 1 cut(s) 1022
AccI GTMKAC 1 cut(s) 867
AccII CGCG 1 cut(s) 1000
AciI CCGC 2 cut(s) 207, 998
AclWI GGATC 2 cut(s) 275, 1007
AcsI RAATTY 1 cut(s) 1123
AcyI GRCGYC 1 cut(s) 328
AfiI CCNNNNNNNGG 2 cut(s) 160, 1022
AflIII ACRYGT 1 cut(s) 850
AgsI TTSAA 5 cut(s) 30, 643, 967, 1128, 1136
AleI CACNNNNGTG 1 cut(s) 1031
AloI GAACNNNNNNTCC 2 cut(s) 249, 281
Alw21I GWGCWC 2 cut(s) 262, 907
Alw26I GTCTC 6 cut(s) 48, 122, 161, 227, 232, 616
AlwI GGATC 2 cut(s) 275, 1007
Ama87I CYCGRG 1 cut(s) 978
AoxI GGCC 1 cut(s) 958
ApaI GGGCCC 1 cut(s) 962
ApeKI GCWGC 2 cut(s) 233, 710
ApoI RAATTY 1 cut(s) 1123
AspA2I CCTAGG 1 cut(s) 767
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 5 cut(s) 164, 173, 764, 958, 959
AsuHPI GGTGA 2 cut(s) 49, 1070
AsuII TTCGAA 1 cut(s) 812
AvaI CYCGRG 1 cut(s) 978
AvaII GGWCC 3 cut(s) 164, 173, 764
AvrII CCTAGG 1 cut(s) 767
BaeGI GKGCMC 1 cut(s) 962
BanI GGYRCC 1 cut(s) 327
BanII GRGCYC 1 cut(s) 962
Bbv12I GWGCWC 2 cut(s) 262, 907
BbvCI CCTCAGC 1 cut(s) 834
BbvI GCAGC 2 cut(s) 220, 697
BccI CCATC 2 cut(s) 209, 1024
BceAI ACGGC 2 cut(s) 315, 797
BciVI GTATCC 2 cut(s) 505, 737
BclI TGATCA 1 cut(s) 930
BcoDI GTCTC 6 cut(s) 48, 122, 161, 227, 232, 616
BfaI CTAG 3 cut(s) 473, 747, 768
BfmI CTRYAG 1 cut(s) 1077
BfoI RGCGCY 1 cut(s) 331
BfuI GTATCC 2 cut(s) 505, 737
BglII AGATCT 1 cut(s) 925
BisI GCNGC 2 cut(s) 234, 711
BlnI CCTAGG 1 cut(s) 767
BlpI GCTNAGC 1 cut(s) 630
BlsI GCNGC 2 cut(s) 235, 712
Bme18I GGWCC 3 cut(s) 164, 173, 764
BmeT110I CYCGRG 1 cut(s) 978
BmgT120I GGNCC 5 cut(s) 164, 173, 764, 958, 959
BmiI GGNNCC 4 cut(s) 165, 329, 959, 960
BmsI GCATC 2 cut(s) 245, 748
BoxI GACNNNNGTC 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 1058, 1090
BpmI CTGGAG 2 cut(s) 148, 360
Bpu10I CCTNAGC 1 cut(s) 834
Bpu1102I GCTNAGC 1 cut(s) 630
Bpu14I TTCGAA 1 cut(s) 812
BsaHI GRCGYC 1 cut(s) 328
BsaI GGTCTC 2 cut(s) 122, 227
BsaJI CCNNGG 1 cut(s) 767
BsaXI ACNNNNNCTCC 6 cut(s) 121, 151, 188, 218, 249, 279
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 1022
Bse118I RCCGGY 1 cut(s) 658
Bse1I ACTGG 3 cut(s) 131, 175, 875
BseDI CCNNGG 1 cut(s) 767
BseLI CCNNNNNNNGG 2 cut(s) 160, 1022
BseMII CTCAG 4 cut(s) 243, 621, 825, 987
BseNI ACTGG 3 cut(s) 131, 175, 875
BseRI GAGGAG 3 cut(s) 36, 389, 851
BseSI GKGCMC 1 cut(s) 962
BseXI GCAGC 2 cut(s) 220, 697
Bsh1236I CGCG 1 cut(s) 1000
BshFI GGCC 1 cut(s) 960
BshNI GGYRCC 1 cut(s) 327
BsiHKAI GWGCWC 2 cut(s) 262, 907
BsiHKCI CYCGRG 1 cut(s) 978
BsiSI CCGG 1 cut(s) 659
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 2 cut(s) 160, 1022
BsmAI GTCTC 6 cut(s) 48, 122, 161, 227, 232, 616
BsmBI CGTCTC 2 cut(s) 161, 232
BsmFI GGGAC 1 cut(s) 404
BsmI GAATGC 2 cut(s) 689, 993
BsnI GGCC 1 cut(s) 960
Bso31I GGTCTC 2 cut(s) 122, 227
BsoBI CYCGRG 1 cut(s) 978
Bsp119I TTCGAA 1 cut(s) 812
Bsp120I GGGCCC 1 cut(s) 958
Bsp1286I GDGCHC 3 cut(s) 262, 907, 962
Bsp143I GATC 6 cut(s) 250, 280, 828, 925, 930, 1012
Bsp1720I GCTNAGC 1 cut(s) 630
BspACI CCGC 2 cut(s) 207, 998
BspANI GGCC 1 cut(s) 960
BspCNI CTCAG 4 cut(s) 242, 622, 826, 986
BspFNI CGCG 1 cut(s) 1000
BspHI TCATGA 1 cut(s) 675
BspLI GGNNCC 4 cut(s) 165, 329, 959, 960
BspMAI CTGCAG 1 cut(s) 1081
BspPI GGATC 2 cut(s) 275, 1007
BspT104I TTCGAA 1 cut(s) 812
BspT107I GGYRCC 1 cut(s) 327
BspTNI GGTCTC 2 cut(s) 122, 227
BsrFI RCCGGY 1 cut(s) 658
BsrI ACTGG 3 cut(s) 131, 175, 875
BssAI RCCGGY 1 cut(s) 658
BssECI CCNNGG 1 cut(s) 767
BssMI GATC 6 cut(s) 250, 280, 828, 925, 930, 1012
BssNI GRCGYC 1 cut(s) 328
BssT1I CCWWGG 1 cut(s) 767
Bst4CI ACNGT 3 cut(s) 221, 517, 902
Bst6I CTCTTC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 328
BstBI TTCGAA 1 cut(s) 812
BstC8I GCNNGC 3 cut(s) 715, 991, 1143
BstDEI CTNAG 4 cut(s) 229, 630, 834, 973
BstFNI CGCG 1 cut(s) 1000
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 6 cut(s) 253, 283, 831, 928, 933, 1015
BstMAI GTCTC 6 cut(s) 48, 122, 161, 227, 232, 616
BstMBI GATC 6 cut(s) 250, 280, 828, 925, 930, 1012
BstMWI GCNNNNNNNGC 4 cut(s) 581, 719, 830, 854
BstNSI RCATGY 1 cut(s) 854
BstPAI GACNNNNGTC 1 cut(s) 153
BstSFI CTRYAG 1 cut(s) 1077
BstSLI GKGCMC 1 cut(s) 962
BstUI CGCG 1 cut(s) 1000
BstV1I GCAGC 2 cut(s) 220, 697
BstX2I RGATCY 1 cut(s) 925
BstYI RGATCY 1 cut(s) 925
BsuI GTATCC 2 cut(s) 505, 737
BsuRI GGCC 1 cut(s) 960
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 3 cut(s) 715, 991, 1143
CciI TCATGA 1 cut(s) 675
CfoI GCGC 1 cut(s) 330
Cfr10I RCCGGY 1 cut(s) 658
Cfr13I GGNCC 5 cut(s) 164, 173, 764, 958, 959
CviAII CATG 5 cut(s) 479, 578, 676, 851, 1020
DdeI CTNAG 4 cut(s) 229, 630, 834, 973
DinI GGCGCC 1 cut(s) 329
DpnI GATC 6 cut(s) 252, 282, 830, 927, 932, 1014
DpnII GATC 6 cut(s) 250, 280, 828, 925, 930, 1012
DraI TTTAAA 1 cut(s) 922
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
EciI GGCGGA 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 767
Eco24I GRGCYC 1 cut(s) 962
Eco31I GGTCTC 2 cut(s) 122, 227
Eco47I GGWCC 3 cut(s) 164, 173, 764
Eco88I CYCGRG 1 cut(s) 978
EcoO109I RGGNCCY 3 cut(s) 164, 958, 959
EcoRI GAATTC 1 cut(s) 1123
EcoT14I CCWWGG 1 cut(s) 767
EcoT38I GRGCYC 1 cut(s) 962
EgeI GGCGCC 1 cut(s) 329
EheI GGCGCC 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 767
Esp3I CGTCTC 2 cut(s) 161, 232
FaeI CATG 5 cut(s) 482, 581, 679, 854, 1023
FalI AAGNNNNNCTT 2 cut(s) 946, 978
FaqI GGGAC 1 cut(s) 404
FatI CATG 5 cut(s) 478, 577, 675, 850, 1019
FauNDI CATATG 1 cut(s) 459
FbaI TGATCA 1 cut(s) 930
FblI GTMKAC 1 cut(s) 867
Fnu4HI GCNGC 2 cut(s) 234, 711
FriOI GRGCYC 1 cut(s) 962
Fsp4HI GCNGC 2 cut(s) 234, 711
FspBI CTAG 3 cut(s) 473, 747, 768
GlaI GCGC 1 cut(s) 329
GluI GCNGC 2 cut(s) 234, 711
GsuI CTGGAG 2 cut(s) 148, 360
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 1 cut(s) 960
HapII CCGG 1 cut(s) 659
HhaI GCGC 1 cut(s) 330
Hin1I GRCGYC 1 cut(s) 328
Hin1II CATG 5 cut(s) 482, 581, 679, 854, 1023
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 7 cut(s) 7, 136, 197, 337, 434, 595, 624
HpaII CCGG 1 cut(s) 659
HphI GGTGA 2 cut(s) 49, 1070
Hpy166II GTNNAC 3 cut(s) 145, 868, 1084
Hpy188I TCNGA 5 cut(s) 196, 257, 280, 429, 930
Hpy188III TCNNGA 5 cut(s) 119, 676, 740, 980, 1133
Hpy8I GTNNAC 3 cut(s) 145, 868, 1084
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 5 cut(s) 191, 195, 378, 452, 918
HpyCH4III ACNGT 3 cut(s) 221, 517, 902
HpyCH4V TGCA 3 cut(s) 236, 848, 1079
HpyF10VI GCNNNNNNNGC 4 cut(s) 581, 719, 830, 854
HpyF3I CTNAG 4 cut(s) 229, 630, 834, 973
Hsp92I GRCGYC 1 cut(s) 328
Hsp92II CATG 5 cut(s) 482, 581, 679, 854, 1023
HspAI GCGC 1 cut(s) 328
KasI GGCGCC 1 cut(s) 327
Ksp22I TGATCA 1 cut(s) 930
Kzo9I GATC 6 cut(s) 250, 280, 828, 925, 930, 1012
LmnI GCTCC 3 cut(s) 257, 910, 1066
Lsp1109I GCAGC 2 cut(s) 220, 697
LweI GCATC 2 cut(s) 245, 748
MaeI CTAG 3 cut(s) 473, 747, 768
MaeIII GTNAC 2 cut(s) 551, 1058
MalI GATC 6 cut(s) 252, 282, 830, 927, 932, 1014
MboI GATC 6 cut(s) 250, 280, 828, 925, 930, 1012
MflI RGATCY 1 cut(s) 925
MhlI GDGCHC 3 cut(s) 262, 907, 962
MluCI AATT 2 cut(s) 667, 1123
Mly113I GGCGCC 1 cut(s) 328
MlyI GAGTC 5 cut(s) 145, 191, 428, 604, 618
MmeI TCCRAC 1 cut(s) 723
MseI TTAA 3 cut(s) 489, 921, 953
MslI CAYNNNNRTG 1 cut(s) 1031
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 1 cut(s) 659
Mva1269I GAATGC 2 cut(s) 689, 993
MvnI CGCG 1 cut(s) 1000
MwoI GCNNNNNNNGC 4 cut(s) 581, 719, 830, 854
NarI GGCGCC 1 cut(s) 328
NdeI CATATG 1 cut(s) 459
NdeII GATC 6 cut(s) 250, 280, 828, 925, 930, 1012
NlaIII CATG 5 cut(s) 482, 581, 679, 854, 1023
NlaIV GGNNCC 4 cut(s) 165, 329, 959, 960
NmuCI GTSAC 2 cut(s) 551, 1058
NspI RCATGY 1 cut(s) 854
NspV TTCGAA 1 cut(s) 812
OliI CACNNNNGTG 1 cut(s) 1031
PagI TCATGA 1 cut(s) 675
PciI ACATGT 1 cut(s) 850
PcsI WCGNNNNNNNCGW 2 cut(s) 261, 328
PctI GAATGC 2 cut(s) 689, 993
PfeI GAWTC 2 cut(s) 7, 337
PflMI CCANNNNNTGG 1 cut(s) 1022
PkrI GCNGC 2 cut(s) 235, 712
PleI GAGTC 5 cut(s) 144, 191, 428, 603, 618
PluTI GGCGCC 1 cut(s) 331
PpsI GAGTC 5 cut(s) 144, 191, 428, 603, 618
PpuMI RGGWCCY 1 cut(s) 164
PscI ACATGT 1 cut(s) 850
PshAI GACNNNNGTC 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 164
PspN4I GGNNCC 4 cut(s) 165, 329, 959, 960
PspOMI GGGCCC 1 cut(s) 958
PspPI GGNCC 5 cut(s) 164, 173, 764, 958, 959
PspPPI RGGWCCY 1 cut(s) 164
PstI CTGCAG 1 cut(s) 1081
PsuI RGATCY 1 cut(s) 925
PvuII CAGCTG 1 cut(s) 233
RseI CAYNNNNRTG 1 cut(s) 1031
SaqAI TTAA 3 cut(s) 489, 921, 953
SatI GCNGC 2 cut(s) 234, 711
Sau3AI GATC 6 cut(s) 250, 280, 828, 925, 930, 1012
Sau96I GGNCC 5 cut(s) 164, 173, 764, 958, 959
SchI GAGTC 5 cut(s) 145, 191, 428, 604, 618
SduI GDGCHC 3 cut(s) 262, 907, 962
SfaNI GCATC 2 cut(s) 245, 748
SfcI CTRYAG 1 cut(s) 1077
SfoI GGCGCC 1 cut(s) 329
SfuI TTCGAA 1 cut(s) 812
SinI GGWCC 3 cut(s) 164, 173, 764
SmiMI CAYNNNNRTG 1 cut(s) 1031
Sse9I AATT 2 cut(s) 667, 1123
SsiI CCGC 2 cut(s) 207, 998
SspDI GGCGCC 1 cut(s) 327
SspMI CTAG 3 cut(s) 473, 747, 768
StyI CCWWGG 1 cut(s) 767
TaaI ACNGT 3 cut(s) 221, 517, 902
TaqI TCGA 5 cut(s) 86, 120, 540, 812, 948
TasI AATT 2 cut(s) 667, 1123
TfiI GAWTC 2 cut(s) 7, 337
Tru1I TTAA 3 cut(s) 489, 921, 953
Tru9I TTAA 3 cut(s) 489, 921, 953
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 2 cut(s) 551, 1058
TseI GCWGC 2 cut(s) 233, 710
Tsp45I GTSAC 2 cut(s) 551, 1058
TspDTI ATGAA 2 cut(s) 455, 911
TspGWI ACGGA 2 cut(s) 143, 1043
TspRI CASTG 1 cut(s) 73
Van91I CCANNNNNTGG 1 cut(s) 1022
VpaK11BI GGWCC 3 cut(s) 164, 173, 764
XapI RAATTY 1 cut(s) 1123
XceI RCATGY 1 cut(s) 854
XmaJI CCTAGG 1 cut(s) 767
XmiI GTMKAC 1 cut(s) 867
XspI CTAG 3 cut(s) 473, 747, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.