Prupe.3G124300_v2.0.a1

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014019
Physical Location & Seq
Reverse (-)
11221499 .. 11226321
4823 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G124300.1

Sequence Viewer

Length: 1179 bp
ATGCAGCGTCTGAAACTGAAACCCATGCTTTCTCCAACATTACAACGCTCCTTGTGCTCCCATGTCCCTTTCTTATTCTGCCTCAAAATCAACTCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTGCAATGTTCACCTTGGACAGGTCTGCAAACCTGGAGAGAGTCCCCACTCAATGAGAATCGTTGCTGGGGACCCAAAGGCCCAAAACCTCAGCCGCTGCAGTCACAGCCGTCTTCTCTTAACAGCGATGACTGTCCAATGGTGTCATCAGTTTCCTCTCTTGCAGAGCTTGGTGCTCTGGTTCTCTCCACCAGTGACCCTCTCGCCAAATCCAAGCTTTCCCATCTTGCTTTTTCCAGGTGGCGCCTAGAGAACCTTCCAATTGGCTCGTGTGAACCCCCTCCTCGACCCGCTCGCCCTCTCAAACCTCAACTGGTTTCCCCGAAAGAAATTCCAGCTCCCAAGAACTCGGGTTTGCCTCTTAATGCTTATATGCTTCATAATCTTGCTCATGTTGAGCTCAATGCGATTGACTTGGCTTGGGATACTGTTGTTCGTTTTTCACCTTTTAGTGAGACTCTAGGGGAGGGATTTTTTGCTGACTTTTCTCATGTCGCTGACGATGAGAGTCGCCATTTTGCTTGGTGTTCTCAGAGACTTGCTGAACTTGGTTTCAATTATGGAGACATGCCTGCTCATAATCTGCTTTGGAGGGAGTGTGAGAAATCATCTGAAAATGTTGCTGCCCGTTTGGCAGTGATCCCTCTAGTCCAGGAAGCTCGAGGACTAGATGCTGGACCACGACTTGTGCAAAAATTGGTTGGCTTTGGAGATCTCAGGACATCAGACATTGTAGCTAGAATTGCTGATGAAGAAGTTGCACATGTGGCTGTTGGAGTCCATTGGTTTGTTGATGTCTGTCAGAAAATGGATTGTACCCCATCTTCCGCATTTAAAGACTTGTTAAAAGAGTATAATGTGGAGTTGAGAGGGCCCTTCAATTATTCTGCTCGTGATGAGGCTGGAATTCCTCGTGATTGGTATGACTTACCTACAAATGACCAGGATAAGAATAAGAAAAAGGATAAAACTGGGAAGCTTACGGAGGTTTATGATAGGCTTGCTTCCATAATTTCCATAGAGAGTGAGAACTCAAGTTTGAACAGGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

393

Amino Acids

43.57

Weight (kDa)

6.33

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014019)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06240
fragaria_vesca FvH4_6g27080 FvH4_6g27080
malus_domestica MD09G1240300.v1.1
prunus_persica Prupe.3G124300_v2.0.a1
pyrus_communis pycom09g15890
rosa_chinensis RchiOBHm_Chr2g0129041
rosa_laevigata RLG00000019046
rosa_multiflora Rmu_co8451771.1_g000001
rosa_roxburghii Rroxscaffold_2G00114940
rosa_rugosa Rorug02G0283600 Rorug02G0283700
rosa_samantha Rh2AG336100 Rh2BG344100 Rh2CG323000 Rh2DG360700
rosa_wichuraiana Rw2G027250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 369
AccBSI CCGCTC 1 cut(s) 419
AciI CCGC 3 cut(s) 221, 417, 954
AclWI GGATC 1 cut(s) 760
AcsI RAATTY 2 cut(s) 456, 1032
AcyI GRCGYC 1 cut(s) 370
AfaI GTAC 1 cut(s) 943
AfiI CCNNNNNNNGG 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 889
AgsI TTSAA 3 cut(s) 682, 1006, 1168
AjnI CCWGG 4 cut(s) 158, 362, 777, 1068
AluBI AGCT 7 cut(s) 295, 343, 464, 526, 785, 863, 1105
AluI AGCT 7 cut(s) 295, 343, 464, 526, 785, 863, 1105
Alw21I GWGCWC 3 cut(s) 59, 304, 528
Alw26I GTCTC 3 cut(s) 575, 655, 684
AlwI GGATC 1 cut(s) 760
AlwNI CAGNNNCTG 2 cut(s) 10, 223
Ama87I CYCGRG 2 cut(s) 475, 786
AoxI GGCC 3 cut(s) 205, 998, 1172
ApaI GGGCCC 1 cut(s) 1002
ApeKI GCWGC 3 cut(s) 4, 223, 749
ApoI RAATTY 2 cut(s) 456, 1032
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 5 cut(s) 197, 206, 803, 998, 999
AsuHPI GGTGA 2 cut(s) 129, 561
AvaI CYCGRG 2 cut(s) 475, 786
AvaII GGWCC 2 cut(s) 197, 803
BaeGI GKGCMC 1 cut(s) 1002
BaeI ACNNNNGTAYC 2 cut(s) 543, 576
BanI GGYRCC 1 cut(s) 369
BanII GRGCYC 2 cut(s) 528, 1002
BarI GAAGNNNNNNTAC 2 cut(s) 934, 966
BauI CACGAG 3 cut(s) 394, 1017, 1038
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 3 cut(s) 59, 304, 528
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 3 cut(s) 16, 210, 736
BccI CCATC 2 cut(s) 357, 955
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 4 cut(s) 160, 364, 779, 1070
BciVI GTATCC 1 cut(s) 544
BcoDI GTCTC 3 cut(s) 575, 655, 684
BfaI CTAG 5 cut(s) 374, 587, 773, 794, 864
BfmI CTRYAG 1 cut(s) 224
BfoI RGCGCY 1 cut(s) 373
BfuI GTATCC 1 cut(s) 544
BglI GCCNNNNNGGC 1 cut(s) 758
BglII AGATCT 1 cut(s) 838
BisI GCNGC 4 cut(s) 5, 221, 224, 750
BlsI GCNGC 4 cut(s) 6, 222, 225, 751
Bme1390I CCNGG 4 cut(s) 160, 364, 779, 1070
Bme18I GGWCC 2 cut(s) 197, 803
BmeT110I CYCGRG 2 cut(s) 475, 786
BmgT120I GGNCC 5 cut(s) 197, 206, 803, 998, 999
BmiI GGNNCC 4 cut(s) 198, 199, 371, 1000
BmrFI CCNGG 4 cut(s) 160, 364, 779, 1070
BmrI ACTGGG 1 cut(s) 1107
BmsI GCATC 1 cut(s) 787
BmuI ACTGGG 1 cut(s) 1107
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 181
Bpu10I CCTNAGC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 1144
BsaHI GRCGYC 1 cut(s) 370
BsaJI CCNNGG 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 709, 739
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 3 cut(s) 318, 444, 1102
Bse3DI GCAATG 1 cut(s) 137
BseBI CCWGG 4 cut(s) 160, 364, 779, 1070
BseDI CCNNGG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMI GCAATG 1 cut(s) 137
BseMII CTCAG 3 cut(s) 230, 671, 856
BseNI ACTGG 3 cut(s) 318, 444, 1102
BseRI GAGGAG 1 cut(s) 399
BseSI GKGCMC 1 cut(s) 1002
BseXI GCAGC 3 cut(s) 16, 210, 736
BseYI CCCAGC 1 cut(s) 192
BshFI GGCC 3 cut(s) 207, 1000, 1174
BshNI GGYRCC 1 cut(s) 369
BsiHKAI GWGCWC 3 cut(s) 59, 304, 528
BsiHKCI CYCGRG 2 cut(s) 475, 786
BslFI GGGAC 3 cut(s) 50, 154, 210
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 3 cut(s) 575, 655, 684
BsmFI GGGAC 3 cut(s) 50, 154, 210
BsnI GGCC 3 cut(s) 207, 1000, 1174
BsoBI CYCGRG 2 cut(s) 475, 786
Bsp120I GGGCCC 1 cut(s) 998
Bsp1286I GDGCHC 4 cut(s) 59, 304, 528, 1002
Bsp143I GATC 2 cut(s) 765, 838
BspACI CCGC 3 cut(s) 221, 417, 954
BspANI GGCC 3 cut(s) 207, 1000, 1174
BspCNI CTCAG 3 cut(s) 229, 670, 855
BspLI GGNNCC 4 cut(s) 198, 199, 371, 1000
BspMAI CTGCAG 1 cut(s) 228
BspPI GGATC 1 cut(s) 760
BspT107I GGYRCC 1 cut(s) 369
BsrBI CCGCTC 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 137
BsrI ACTGG 3 cut(s) 318, 444, 1102
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 2 cut(s) 765, 838
BssNI GRCGYC 1 cut(s) 370
BssSI CACGAG 3 cut(s) 394, 1017, 1038
BssT1I CCWWGG 1 cut(s) 140
Bst2BI CACGAG 3 cut(s) 394, 1017, 1038
Bst2UI CCWGG 4 cut(s) 160, 364, 779, 1070
Bst4CI ACNGT 2 cut(s) 260, 556
BstACI GRCGYC 1 cut(s) 370
BstC8I GCNNGC 3 cut(s) 421, 699, 1128
BstDEI CTNAG 4 cut(s) 216, 657, 842, 1176
BstENI CCTNNNNNAGG 1 cut(s) 144
BstH2I RGCGCY 1 cut(s) 373
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 2 cut(s) 768, 841
BstMAI GTCTC 3 cut(s) 575, 655, 684
BstMBI GATC 2 cut(s) 765, 838
BstMWI GCNNNNNNNGC 5 cut(s) 54, 232, 758, 869, 893
BstNI CCWGG 4 cut(s) 160, 364, 779, 1070
BstNSI RCATGY 2 cut(s) 697, 893
BstSCI CCNGG 4 cut(s) 158, 362, 777, 1068
BstSFI CTRYAG 1 cut(s) 224
BstSLI GKGCMC 1 cut(s) 1002
BstV1I GCAGC 3 cut(s) 16, 210, 736
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 838
BstYI RGATCY 1 cut(s) 838
BsuI GTATCC 1 cut(s) 544
BsuRI GGCC 3 cut(s) 207, 1000, 1174
BtgZI GCGATG 1 cut(s) 267
BtsI GCAGTG 1 cut(s) 768
BtsIMutI CAGTG 2 cut(s) 325, 768
Cac8I GCNNGC 3 cut(s) 421, 699, 1128
CaiI CAGNNNCTG 2 cut(s) 10, 223
CfoI GCGC 1 cut(s) 372
Cfr13I GGNCC 5 cut(s) 197, 206, 803, 998, 999
Csp6I GTAC 1 cut(s) 942
CviAII CATG 6 cut(s) 25, 62, 518, 617, 694, 890
CviQI GTAC 1 cut(s) 942
DdeI CTNAG 4 cut(s) 216, 657, 842, 1176
DinI GGCGCC 1 cut(s) 371
DpnI GATC 2 cut(s) 767, 840
DpnII GATC 2 cut(s) 765, 838
DraI TTTAAA 1 cut(s) 961
Ecl136II GAGCTC 1 cut(s) 526
Eco130I CCWWGG 1 cut(s) 140
Eco147I AGGCCT 1 cut(s) 1174
Eco24I GRGCYC 2 cut(s) 528, 1002
Eco47I GGWCC 2 cut(s) 197, 803
Eco53kI GAGCTC 1 cut(s) 526
Eco88I CYCGRG 2 cut(s) 475, 786
EcoICRI GAGCTC 1 cut(s) 526
EcoNI CCTNNNNNAGG 1 cut(s) 144
EcoO109I RGGNCCY 3 cut(s) 197, 998, 999
EcoRI GAATTC 1 cut(s) 1032
EcoRII CCWGG 4 cut(s) 158, 362, 777, 1068
EcoT14I CCWWGG 1 cut(s) 140
EcoT38I GRGCYC 2 cut(s) 528, 1002
EgeI GGCGCC 1 cut(s) 371
EheI GGCGCC 1 cut(s) 371
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 6 cut(s) 28, 65, 521, 620, 697, 893
FaqI GGGAC 3 cut(s) 50, 154, 210
FatI CATG 6 cut(s) 24, 61, 517, 616, 693, 889
FauI CCCGC 1 cut(s) 424
Fnu4HI GCNGC 4 cut(s) 5, 221, 224, 750
FriOI GRGCYC 2 cut(s) 528, 1002
Fsp4HI GCNGC 4 cut(s) 5, 221, 224, 750
FspBI CTAG 5 cut(s) 374, 587, 773, 794, 864
GlaI GCGC 1 cut(s) 371
GluI GCNGC 4 cut(s) 5, 221, 224, 750
GsaI CCCAGC 1 cut(s) 196
GsuI CTGGAG 1 cut(s) 181
HaeII RGCGCY 1 cut(s) 373
HaeIII GGCC 3 cut(s) 207, 1000, 1174
HhaI GCGC 1 cut(s) 372
Hin1I GRCGYC 1 cut(s) 370
Hin1II CATG 6 cut(s) 28, 65, 521, 620, 697, 893
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HindIII AAGCTT 2 cut(s) 341, 1103
HinfI GANTC 5 cut(s) 167, 184, 583, 634, 903
HphI GGTGA 2 cut(s) 129, 561
Hpy166II GTNNAC 2 cut(s) 137, 401
Hpy188I TCNGA 5 cut(s) 12, 660, 739, 853, 930
Hpy188III TCNNGA 3 cut(s) 844, 1019, 1040
Hpy8I GTNNAC 2 cut(s) 137, 401
HpyAV CCTTC 2 cut(s) 392, 1012
HpyCH4III ACNGT 2 cut(s) 260, 556
HpyCH4V TGCA 7 cut(s) 4, 130, 154, 226, 290, 817, 887
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 232, 758, 869, 893
HpyF3I CTNAG 4 cut(s) 216, 657, 842, 1176
Hsp92I GRCGYC 1 cut(s) 370
Hsp92II CATG 6 cut(s) 28, 65, 521, 620, 697, 893
HspAI GCGC 1 cut(s) 370
KasI GGCGCC 1 cut(s) 369
KflI GGGWCCC 1 cut(s) 197
Kzo9I GATC 2 cut(s) 765, 838
LmnI GCTCC 3 cut(s) 53, 62, 469
Lsp1109I GCAGC 3 cut(s) 16, 210, 736
LweI GCATC 1 cut(s) 787
MaeI CTAG 5 cut(s) 374, 587, 773, 794, 864
MaeIII GTNAC 2 cut(s) 228, 320
MalI GATC 2 cut(s) 767, 840
MbiI CCGCTC 1 cut(s) 419
MboI GATC 2 cut(s) 765, 838
MfeI CAATTG 1 cut(s) 387
MflI RGATCY 1 cut(s) 838
MhlI GDGCHC 4 cut(s) 59, 304, 528, 1002
MluCI AATT 8 cut(s) 387, 456, 682, 821, 867, 1006, 1032, 1137
Mly113I GGCGCC 1 cut(s) 370
MlyI GAGTC 4 cut(s) 176, 577, 643, 912
MmeI TCCRAC 2 cut(s) 59, 880
MseI TTAA 4 cut(s) 246, 489, 960, 971
MspA1I CMGCKG 1 cut(s) 223
MspR9I CCNGG 4 cut(s) 160, 364, 779, 1070
MunI CAATTG 1 cut(s) 387
MvaI CCWGG 4 cut(s) 160, 364, 779, 1070
MwoI GCNNNNNNNGC 5 cut(s) 54, 232, 758, 869, 893
NarI GGCGCC 1 cut(s) 370
NdeII GATC 2 cut(s) 765, 838
NlaIII CATG 6 cut(s) 28, 65, 521, 620, 697, 893
NlaIV GGNNCC 4 cut(s) 198, 199, 371, 1000
NmuCI GTSAC 2 cut(s) 228, 320
NspI RCATGY 2 cut(s) 697, 893
PaeR7I CTCGAG 1 cut(s) 786
PceI AGGCCT 1 cut(s) 1174
PciI ACATGT 1 cut(s) 889
PfeI GAWTC 1 cut(s) 184
PfoI TCCNGGA 1 cut(s) 777
PkrI GCNGC 4 cut(s) 6, 222, 225, 751
PleI GAGTC 4 cut(s) 175, 577, 642, 911
PluTI GGCGCC 1 cut(s) 373
PpsI GAGTC 4 cut(s) 175, 577, 642, 911
PpuMI RGGWCCY 1 cut(s) 197
PscI ACATGT 1 cut(s) 889
Psp124BI GAGCTC 1 cut(s) 528
Psp5II RGGWCCY 1 cut(s) 197
Psp6I CCWGG 4 cut(s) 158, 362, 777, 1068
PspFI CCCAGC 1 cut(s) 192
PspGI CCWGG 4 cut(s) 158, 362, 777, 1068
PspN4I GGNNCC 4 cut(s) 198, 199, 371, 1000
PspOMI GGGCCC 1 cut(s) 998
PspPI GGNCC 5 cut(s) 197, 206, 803, 998, 999
PspPPI RGGWCCY 1 cut(s) 197
PspXI VCTCGAGB 1 cut(s) 786
PstI CTGCAG 1 cut(s) 228
PstNI CAGNNNCTG 2 cut(s) 10, 223
PsuI RGATCY 1 cut(s) 838
RsaI GTAC 1 cut(s) 943
RsaNI GTAC 1 cut(s) 942
SacI GAGCTC 1 cut(s) 528
SaqAI TTAA 4 cut(s) 246, 489, 960, 971
SatI GCNGC 4 cut(s) 5, 221, 224, 750
Sau3AI GATC 2 cut(s) 765, 838
Sau96I GGNCC 5 cut(s) 197, 206, 803, 998, 999
SchI GAGTC 4 cut(s) 176, 577, 643, 912
ScrFI CCNGG 4 cut(s) 160, 364, 779, 1070
SduI GDGCHC 4 cut(s) 59, 304, 528, 1002
SfaNI GCATC 1 cut(s) 787
SfcI CTRYAG 1 cut(s) 224
SfoI GGCGCC 1 cut(s) 371
Sfr274I CTCGAG 1 cut(s) 786
SinI GGWCC 2 cut(s) 197, 803
SlaI CTCGAG 1 cut(s) 786
SmlI CTYRAG 2 cut(s) 786, 1159
SmoI CTYRAG 2 cut(s) 786, 1159
Sse9I AATT 8 cut(s) 387, 456, 682, 821, 867, 1006, 1032, 1137
SseBI AGGCCT 1 cut(s) 1174
SsiI CCGC 3 cut(s) 221, 417, 954
SspDI GGCGCC 1 cut(s) 369
SspMI CTAG 5 cut(s) 374, 587, 773, 794, 864
SstI GAGCTC 1 cut(s) 528
StuI AGGCCT 1 cut(s) 1174
StyD4I CCNGG 4 cut(s) 158, 362, 777, 1068
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 2 cut(s) 260, 556
TaqI TCGA 2 cut(s) 412, 787
TasI AATT 8 cut(s) 387, 456, 682, 821, 867, 1006, 1032, 1137
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 4 cut(s) 246, 489, 960, 971
Tru9I TTAA 4 cut(s) 246, 489, 960, 971
TscAI CASTG 2 cut(s) 325, 768
TseFI GTSAC 2 cut(s) 228, 320
TseI GCWGC 3 cut(s) 4, 223, 749
Tsp45I GTSAC 2 cut(s) 228, 320
TspDTI ATGAA 2 cut(s) 494, 891
TspGWI ACGGA 1 cut(s) 1124
TspRI CASTG 2 cut(s) 325, 768
VpaK11BI GGWCC 2 cut(s) 197, 803
XagI CCTNNNNNAGG 1 cut(s) 144
XapI RAATTY 2 cut(s) 456, 1032
XceI RCATGY 2 cut(s) 697, 893
XhoI CTCGAG 1 cut(s) 786
XspI CTAG 5 cut(s) 374, 587, 773, 794, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.