Rh2CG323000

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014019
Physical Location & Seq
Forward (+)
41639894 .. 41645179
5286 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG323000.1

Sequence Viewer

Length: 945 bp
ATGCAGCGTCTCAAACTCCACCATCCATTGTGCTCCTCCAAAGGAGCTCCTTTGTTATCATCATGCCTCAGAACCAAGTCTCTTTCCTCTTCTTGTATGCAACCCTCACCCTGGTCTGGTCTCGAAACCTGGAGGAATAGCCCCCTCAATGAGAACCGTTGCTGGGGACCCAAGGGCCCCCAAACGATTGACAACGCCGACACTCCACTGGTGTCGTCGGCTTCCTCTCTTGCAGAGCTTGGTGCTCTCGTTCTCTCCACCAGTGACCCCCTCGCCAAGTCCAACCTTTCCCACATCGCTTACTCCACGTGGCGCCAACACAACCTTCCACTTGGTGCATGCCAACCTCCTCCTCGTCCTGCCCGCCCTCTGAAACCCCAACTGGTTCATCCGAAAGAAATTCCAGCTCCCAAGAACTCGGGTTTGCCTCTCAATGCGTATATGCTTCATAATCTTGCACATGTTGAGCTCAATGCGATTGATTTAGCATGGGATACTGTTGTCCGTTTCTCTCCTTTTAGTGAGATTCTAGGCCAAGGGTTTTTCGCTGACTTTGCTCACGTTGCCGACGATGAGAGTCGCCATTTTGCTTGGTGTTCTCAGAGGCTTGCCGAACTTGGTTTCAAGTATGGAGATATGCCTGCTCATAATCTGCTCTGGAGGGAGTGTGAGAAATCATCTGACAATGTTGCTGCACGTTTGGCTGTCATACCACTGGTCCAGGAGGCCAGAGGACTAGATGCTGGACCTCGACTTGTGCAAAAATTGGTTGGCTTCGGAGATCTCAGGACATCTGAAATCGTAGCTAGAATTGCTAATGAAGAAGTGGCACATGTAGCTGTTGGTGTCCACTGGTTTGTCAGTGTCTGTCAGAAATTAGGTTGCGCACCGTCTTCTGCATTTAAAGGTTTGGCTGTCCTGTTTCTTTTCTGGTCTGTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

314

Amino Acids

34.41

Weight (kDa)

8.37

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF455 PF04305 87 - 304 3.3e-76 Protein of unknown function (DUF455)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014019)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06240
fragaria_vesca FvH4_6g27080 FvH4_6g27080
malus_domestica MD09G1240300.v1.1
prunus_persica Prupe.3G124300_v2.0.a1
pyrus_communis pycom09g15890
rosa_chinensis RchiOBHm_Chr2g0129041
rosa_laevigata RLG00000019046
rosa_multiflora Rmu_co8451771.1_g000001
rosa_roxburghii Rroxscaffold_2G00114940
rosa_rugosa Rorug02G0283600 Rorug02G0283700
rosa_samantha Rh2AG336100 Rh2BG344100 Rh2CG323000 Rh2DG360700
rosa_wichuraiana Rw2G027250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 886
AccB1I GGYRCC 1 cut(s) 312
AciI CCGC 1 cut(s) 364
AcsI RAATTY 1 cut(s) 399
AcvI CACGTG 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 313
AdeI CACNNNGTG 1 cut(s) 335
AfiI CCNNNNNNNGG 3 cut(s) 111, 116, 163
AflIII ACRYGT 2 cut(s) 460, 832
AgsI TTSAA 1 cut(s) 625
AjnI CCWGG 3 cut(s) 110, 128, 720
AjuI GAANNNNNNNTTGG 2 cut(s) 309, 341
AluBI AGCT 6 cut(s) 47, 238, 407, 469, 806, 839
AluI AGCT 6 cut(s) 47, 238, 407, 469, 806, 839
Alw21I GWGCWC 4 cut(s) 35, 49, 247, 471
Alw26I GTCTC 3 cut(s) 14, 84, 125
AlwNI CAGNNNCTG 1 cut(s) 867
Ama87I CYCGRG 1 cut(s) 418
AoxI GGCC 3 cut(s) 175, 532, 726
ApaI GGGCCC 1 cut(s) 179
ApeKI GCWGC 2 cut(s) 4, 692
ApoI RAATTY 1 cut(s) 399
AspLEI GCGC 2 cut(s) 315, 887
AspS9I GGNCC 5 cut(s) 167, 175, 176, 718, 746
AsuHPI GGTGA 1 cut(s) 99
AvaI CYCGRG 1 cut(s) 418
AvaII GGWCC 3 cut(s) 167, 718, 746
BaeGI GKGCMC 1 cut(s) 179
BaeI ACNNNNGTAYC 2 cut(s) 486, 519
BanI GGYRCC 1 cut(s) 312
BanII GRGCYC 3 cut(s) 49, 179, 471
BbrPI CACGTG 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 885
Bbv12I GWGCWC 4 cut(s) 35, 49, 247, 471
BbvI GCAGC 2 cut(s) 16, 679
BccI CCATC 1 cut(s) 30
BciT130I CCWGG 3 cut(s) 112, 130, 722
BciVI GTATCC 1 cut(s) 487
BcoDI GTCTC 3 cut(s) 14, 84, 125
BfaI CTAG 3 cut(s) 530, 737, 807
BfoI RGCGCY 1 cut(s) 316
BfuI GTATCC 1 cut(s) 487
BglII AGATCT 1 cut(s) 781
BisI GCNGC 2 cut(s) 5, 693
BlsI GCNGC 2 cut(s) 6, 694
Bme1390I CCNGG 3 cut(s) 112, 130, 722
Bme18I GGWCC 3 cut(s) 167, 718, 746
BmeT110I CYCGRG 1 cut(s) 418
BmgT120I GGNCC 5 cut(s) 167, 175, 176, 718, 746
BmiI GGNNCC 5 cut(s) 168, 169, 177, 178, 314
BmrFI CCNGG 3 cut(s) 112, 130, 722
BmsI GCATC 1 cut(s) 730
BpiI GAAGAC 1 cut(s) 885
BpmI CTGGAG 2 cut(s) 151, 679
BsaAI YACGTR 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 313
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 3 cut(s) 110, 171, 535
BsaXI ACNNNNNCTCC 2 cut(s) 652, 682
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 116, 163
Bse1I ACTGG 5 cut(s) 213, 261, 387, 720, 857
BseBI CCWGG 3 cut(s) 112, 130, 722
BseDI CCNNGG 3 cut(s) 110, 171, 535
BseGI GGATG 2 cut(s) 22, 388
BseLI CCNNNNNNNGG 3 cut(s) 111, 116, 163
BseMII CTCAG 3 cut(s) 82, 614, 799
BseNI ACTGG 5 cut(s) 213, 261, 387, 720, 857
BseRI GAGGAG 3 cut(s) 25, 339, 342
BseSI GKGCMC 1 cut(s) 179
BseXI GCAGC 2 cut(s) 16, 679
BseYI CCCAGC 1 cut(s) 162
BsgI GTGCAG 1 cut(s) 678
BshFI GGCC 3 cut(s) 177, 534, 728
BshNI GGYRCC 1 cut(s) 312
BsiHKAI GWGCWC 4 cut(s) 35, 49, 247, 471
BsiHKCI CYCGRG 1 cut(s) 418
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 3 cut(s) 111, 116, 163
BsmAI GTCTC 3 cut(s) 14, 84, 125
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 180
BsnI GGCC 3 cut(s) 177, 534, 728
Bso31I GGTCTC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 418
Bsp120I GGGCCC 1 cut(s) 175
Bsp1286I GDGCHC 5 cut(s) 35, 49, 179, 247, 471
Bsp143I GATC 1 cut(s) 781
BspACI CCGC 1 cut(s) 364
BspANI GGCC 3 cut(s) 177, 534, 728
BspCNI CTCAG 3 cut(s) 81, 613, 798
BspLI GGNNCC 5 cut(s) 168, 169, 177, 178, 314
BspT107I GGYRCC 1 cut(s) 312
BspTNI GGTCTC 1 cut(s) 125
BsrI ACTGG 5 cut(s) 213, 261, 387, 720, 857
BssECI CCNNGG 3 cut(s) 110, 171, 535
BssMI GATC 1 cut(s) 781
BssNI GRCGYC 1 cut(s) 313
BssT1I CCWWGG 2 cut(s) 171, 535
Bst2UI CCWGG 3 cut(s) 112, 130, 722
Bst4CI ACNGT 3 cut(s) 158, 499, 891
Bst6I CTCTTC 1 cut(s) 94
BstACI GRCGYC 1 cut(s) 313
BstBAI YACGTR 1 cut(s) 309
BstC8I GCNNGC 4 cut(s) 340, 364, 609, 642
BstDEI CTNAG 3 cut(s) 68, 600, 785
BstF5I GGATG 2 cut(s) 22, 388
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 2 cut(s) 315, 887
BstKTI GATC 1 cut(s) 784
BstMAI GTCTC 3 cut(s) 14, 84, 125
BstMBI GATC 1 cut(s) 781
BstMWI GCNNNNNNNGC 5 cut(s) 554, 563, 701, 812, 836
BstNI CCWGG 3 cut(s) 112, 130, 722
BstNSI RCATGY 3 cut(s) 342, 464, 836
BstSCI CCNGG 3 cut(s) 110, 128, 720
BstSLI GKGCMC 1 cut(s) 179
BstV1I GCAGC 2 cut(s) 16, 679
BstV2I GAAGAC 1 cut(s) 885
BstX2I RGATCY 1 cut(s) 781
BstYI RGATCY 1 cut(s) 781
BsuI GTATCC 1 cut(s) 487
BsuRI GGCC 3 cut(s) 177, 534, 728
BtgZI GCGATG 1 cut(s) 280
BtsCI GGATG 2 cut(s) 22, 388
BtsIMutI CAGTG 5 cut(s) 206, 268, 713, 850, 868
Cac8I GCNNGC 4 cut(s) 340, 364, 609, 642
CaiI CAGNNNCTG 1 cut(s) 867
CfoI GCGC 2 cut(s) 315, 887
Cfr13I GGNCC 5 cut(s) 167, 175, 176, 718, 746
CviAII CATG 5 cut(s) 63, 339, 461, 489, 833
DdeI CTNAG 3 cut(s) 68, 600, 785
DinI GGCGCC 1 cut(s) 314
DpnI GATC 1 cut(s) 783
DpnII GATC 1 cut(s) 781
DraI TTTAAA 1 cut(s) 904
DraIII CACNNNGTG 1 cut(s) 335
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Ecl136II GAGCTC 2 cut(s) 47, 469
Eco130I CCWWGG 2 cut(s) 171, 535
Eco24I GRGCYC 3 cut(s) 49, 179, 471
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 3 cut(s) 167, 718, 746
Eco53kI GAGCTC 2 cut(s) 47, 469
Eco72I CACGTG 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 418
EcoICRI GAGCTC 2 cut(s) 47, 469
EcoO109I RGGNCCY 3 cut(s) 167, 175, 176
EcoRII CCWGG 3 cut(s) 110, 128, 720
EcoT14I CCWWGG 2 cut(s) 171, 535
EcoT38I GRGCYC 3 cut(s) 49, 179, 471
EgeI GGCGCC 1 cut(s) 314
EheI GGCGCC 1 cut(s) 314
ErhI CCWWGG 2 cut(s) 171, 535
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 5 cut(s) 66, 342, 464, 492, 836
FaqI GGGAC 1 cut(s) 180
FatI CATG 5 cut(s) 62, 338, 460, 488, 832
FauI CCCGC 1 cut(s) 371
Fnu4HI GCNGC 2 cut(s) 5, 693
FokI GGATG 2 cut(s) 9, 375
FriOI GRGCYC 3 cut(s) 49, 179, 471
Fsp4HI GCNGC 2 cut(s) 5, 693
FspBI CTAG 3 cut(s) 530, 737, 807
FspI TGCGCA 1 cut(s) 886
GlaI GCGC 2 cut(s) 314, 886
GluI GCNGC 2 cut(s) 5, 693
GsaI CCCAGC 1 cut(s) 166
GsuI CTGGAG 2 cut(s) 151, 679
HaeII RGCGCY 1 cut(s) 316
HaeIII GGCC 3 cut(s) 177, 534, 728
HhaI GCGC 2 cut(s) 315, 887
Hin1I GRCGYC 1 cut(s) 313
Hin1II CATG 5 cut(s) 66, 342, 464, 492, 836
Hin6I GCGC 2 cut(s) 313, 885
HinP1I GCGC 2 cut(s) 313, 885
HinfI GANTC 2 cut(s) 526, 577
HphI GGTGA 1 cut(s) 99
Hpy166II GTNNAC 1 cut(s) 850
Hpy188I TCNGA 8 cut(s) 71, 372, 393, 603, 682, 779, 796, 873
Hpy188III TCNNGA 3 cut(s) 122, 658, 787
Hpy8I GTNNAC 1 cut(s) 850
Hpy99I CGWCG 2 cut(s) 220, 572
HpyAV CCTTC 1 cut(s) 335
HpyCH4III ACNGT 3 cut(s) 158, 499, 891
HpyCH4IV ACGT 3 cut(s) 308, 561, 697
HpyCH4V TGCA 8 cut(s) 4, 100, 233, 338, 458, 695, 760, 899
HpyF10VI GCNNNNNNNGC 5 cut(s) 554, 563, 701, 812, 836
HpyF3I CTNAG 3 cut(s) 68, 600, 785
HpySE526I ACGT 3 cut(s) 308, 561, 697
Hsp92I GRCGYC 1 cut(s) 313
Hsp92II CATG 5 cut(s) 66, 342, 464, 492, 836
HspAI GCGC 2 cut(s) 313, 885
KasI GGCGCC 1 cut(s) 312
KflI GGGWCCC 1 cut(s) 167
Kzo9I GATC 1 cut(s) 781
LmnI GCTCC 4 cut(s) 38, 44, 52, 412
Lsp1109I GCAGC 2 cut(s) 16, 679
LweI GCATC 1 cut(s) 730
MaeI CTAG 3 cut(s) 530, 737, 807
MaeII ACGT 3 cut(s) 308, 561, 697
MaeIII GTNAC 1 cut(s) 263
MalI GATC 1 cut(s) 783
MboI GATC 1 cut(s) 781
MboII GAAGA 3 cut(s) 81, 833, 885
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 5 cut(s) 35, 49, 179, 247, 471
MluCI AATT 4 cut(s) 399, 764, 810, 875
Mly113I GGCGCC 1 cut(s) 313
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 1 cut(s) 306
MseI TTAA 1 cut(s) 903
MspR9I CCNGG 3 cut(s) 112, 130, 722
MvaI CCWGG 3 cut(s) 112, 130, 722
MwoI GCNNNNNNNGC 5 cut(s) 554, 563, 701, 812, 836
NarI GGCGCC 1 cut(s) 313
NdeII GATC 1 cut(s) 781
NlaIII CATG 5 cut(s) 66, 342, 464, 492, 836
NlaIV GGNNCC 5 cut(s) 168, 169, 177, 178, 314
NmuCI GTSAC 1 cut(s) 263
NsbI TGCGCA 1 cut(s) 886
NspI RCATGY 3 cut(s) 342, 464, 836
PaeI GCATGC 1 cut(s) 342
PciI ACATGT 2 cut(s) 460, 832
PcsI WCGNNNNNNNCGW 1 cut(s) 567
PfeI GAWTC 1 cut(s) 526
PfoI TCCNGGA 1 cut(s) 720
PkrI GCNGC 2 cut(s) 6, 694
PleI GAGTC 1 cut(s) 585
PluTI GGCGCC 1 cut(s) 316
PmaCI CACGTG 1 cut(s) 309
PmlI CACGTG 1 cut(s) 309
PpsI GAGTC 1 cut(s) 585
Ppu21I YACGTR 1 cut(s) 309
PpuMI RGGWCCY 1 cut(s) 167
PscI ACATGT 2 cut(s) 460, 832
Psp124BI GAGCTC 2 cut(s) 49, 471
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 3 cut(s) 110, 128, 720
PspCI CACGTG 1 cut(s) 309
PspFI CCCAGC 1 cut(s) 162
PspGI CCWGG 3 cut(s) 110, 128, 720
PspN4I GGNNCC 5 cut(s) 168, 169, 177, 178, 314
PspOMI GGGCCC 1 cut(s) 175
PspPI GGNCC 5 cut(s) 167, 175, 176, 718, 746
PspPPI RGGWCCY 1 cut(s) 167
PstNI CAGNNNCTG 1 cut(s) 867
PsuI RGATCY 1 cut(s) 781
SacI GAGCTC 2 cut(s) 49, 471
SaqAI TTAA 1 cut(s) 903
SatI GCNGC 2 cut(s) 5, 693
Sau3AI GATC 1 cut(s) 781
Sau96I GGNCC 5 cut(s) 167, 175, 176, 718, 746
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 3 cut(s) 112, 130, 722
SduI GDGCHC 5 cut(s) 35, 49, 179, 247, 471
SfaNI GCATC 1 cut(s) 730
SfoI GGCGCC 1 cut(s) 314
SinI GGWCC 3 cut(s) 167, 718, 746
SphI GCATGC 1 cut(s) 342
Sse9I AATT 4 cut(s) 399, 764, 810, 875
SsiI CCGC 1 cut(s) 364
SspDI GGCGCC 1 cut(s) 312
SspMI CTAG 3 cut(s) 530, 737, 807
SstI GAGCTC 2 cut(s) 49, 471
StyD4I CCNGG 3 cut(s) 110, 128, 720
StyI CCWWGG 2 cut(s) 171, 535
TaaI ACNGT 3 cut(s) 158, 499, 891
TaiI ACGT 3 cut(s) 311, 564, 700
TaqI TCGA 2 cut(s) 123, 751
TasI AATT 4 cut(s) 399, 764, 810, 875
TfiI GAWTC 1 cut(s) 526
Tru1I TTAA 1 cut(s) 903
Tru9I TTAA 1 cut(s) 903
TscAI CASTG 5 cut(s) 213, 268, 720, 857, 868
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 2 cut(s) 4, 692
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 3 cut(s) 377, 437, 834
TspGWI ACGGA 1 cut(s) 494
TspRI CASTG 5 cut(s) 213, 268, 720, 857, 868
VpaK11BI GGWCC 3 cut(s) 167, 718, 746
XapI RAATTY 1 cut(s) 399
XceI RCATGY 3 cut(s) 342, 464, 836
XspI CTAG 3 cut(s) 530, 737, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.