Rorug02G0283700

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014019
Physical Location & Seq
Reverse (-)
30845260 .. 30847570
2311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0283700.1

Sequence Viewer

Length: 1305 bp
ATGATGTGCATACCTGAGCTGTTTATATGCCCAATTAGTCTGGAGCTGTTCAAAGATCCAGTGACTCTAAGCACAGGCCTAACCTATGACAGGTCGAGCATTCAACAATGGCTGGCTGCTGGTAATCTGACATGTCCAGTCACAATGCAGAAGCTTGATGATCCAATCACCATGGTTCCGAATCACACTCTTCGCCATTTGATCACTCAGTGGCTGCAAATGGGTAGTCAAACTCAAAACTCGAATCATTCTGATGATCATTGTCACTTGGAAACCACAACTACTGATTCTTTAGCTTCACTCAAACACGTACTAGAGTCTCGTGAGTTTGCCTTCGAGAACAAGGTTCAAGCACTCGAAAAGATTTCATCTTCACCGTCCACAAATTACTTGCTACTGCAGCTCGGGTACTTGCCTTTGCTACTAGAACTAGTCTTTGGACTAGTTCCAGAAGCCAGAGTACTACTCATCAGTGAAGAGTACTACTACATCAAGTTTGTTGAGCTTGCGCTCTCTCGTGTTCTGATACTGCTGCCTCTAGGGGGTGGGTTCGAGCCTCTAAATATTTTGAAAGAAGAGAGTAAATTGTCATCTTTCGAAGTCTTGTTGGCGGGCGGCTCTGCATTCATCAGAATCAACTTATGCCACCTTATAGAGGCAGTTTCAGCATCAGAGAGCAGCAGCAGCAGAACAAAAGGGCTGCGTGTTGTTCTTGGAAAGAACCAGGGGATCTTGACTCAGCTGGTTCAGCTAATTCTTCACCCGAGTGATTCGGAGGAGGAGGCTGCAGATGCTGCAATCAGAGCCGTGTCAACATTGTCTTCCTTTGAAGATAACATAGAGTCTTTGGTCAGAAATGGCATGTTAAATGGACTAGTGACATACATTACTAGGACCGAAAAGCGCGAAAGAAGCTTGGCGCCATTGGCAACGGCGATAATTGAGAGGCTTTTAGGAGTAGAGAGTGGAAAAGAGGAATTGCTTAATAGTAATAACAATAATGGCACCGGTGGCAATGGCATTCATGCTCTTGTTAAGATGGTTTTCAGGGTATCGTGGTCCAATGTTGATGATGACCATGAACACCACCGAGGGAGTGAGAGTGCCGTTACCTCACTTTTGATTGTGTGCAATGATTCTTTATCGGCACGAGAGGAAGCCATTAGCGCCGGAGTGTTGACTCAGTTACTATTGCTTATGCAGAGCCAGTGCAGCAATAGCACCAAAGCGAAGGCGAGAATGTTACTCAAACTCCTTAGAACCAAGTGGTCTCAGGACTCCAAGCAATTAATCTCAATGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

434

Amino Acids

47.9

Weight (kDa)

5.6

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 4 - 73 8.3e-18 U-box domain
ARM_PUB PF25598 190 - 426 1.2e-25 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014019)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06240
fragaria_vesca FvH4_6g27080 FvH4_6g27080
malus_domestica MD09G1240300.v1.1
prunus_persica Prupe.3G124300_v2.0.a1
pyrus_communis pycom09g15890
rosa_chinensis RchiOBHm_Chr2g0129041
rosa_laevigata RLG00000019046
rosa_multiflora Rmu_co8451771.1_g000001
rosa_roxburghii Rroxscaffold_2G00114940
rosa_rugosa Rorug02G0283600 Rorug02G0283700
rosa_samantha Rh2AG336100 Rh2BG344100 Rh2CG323000 Rh2DG360700
rosa_wichuraiana Rw2G027250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 919, 1004
AccII CGCG 1 cut(s) 906
AciI CCGC 2 cut(s) 611, 615
AclWI GGATC 3 cut(s) 50, 155, 737
AcyI GRCGYC 1 cut(s) 920
AdeI CACNNNGTG 1 cut(s) 210
AfaI GTAC 4 cut(s) 312, 410, 462, 482
AfiI CCNNNNNNNGG 3 cut(s) 90, 542, 655
AflIII ACRYGT 2 cut(s) 131, 307
AgeI ACCGGT 1 cut(s) 1007
AgsI TTSAA 5 cut(s) 52, 104, 350, 571, 830
AhlI ACTAGT 3 cut(s) 430, 442, 874
AjnI CCWGG 1 cut(s) 723
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
AleI CACNNNNGTG 1 cut(s) 765
AluBI AGCT 9 cut(s) 19, 46, 154, 296, 403, 505, 742, 751, 915
AluI AGCT 9 cut(s) 19, 46, 154, 296, 403, 505, 742, 751, 915
Alw26I GTCTC 2 cut(s) 324, 1275
AlwI GGATC 3 cut(s) 50, 155, 737
AlwNI CAGNNNCTG 2 cut(s) 214, 794
Ama87I CYCGRG 2 cut(s) 404, 763
AoxI GGCC 1 cut(s) 76
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
AseI ATTAAT 1 cut(s) 1289
AsiGI ACCGGT 1 cut(s) 1007
AspLEI GCGC 4 cut(s) 511, 906, 922, 1169
AspS9I GGNCC 2 cut(s) 894, 1059
AsuHPI GGTGA 3 cut(s) 160, 366, 752
AsuII TTCGAA 1 cut(s) 597
AvaI CYCGRG 2 cut(s) 404, 763
AvaII GGWCC 2 cut(s) 894, 1059
BanI GGYRCC 2 cut(s) 919, 1004
BarI GAAGNNNNNNTAC 2 cut(s) 444, 476
BauI CACGAG 3 cut(s) 321, 516, 1149
BbsI GAAGAC 1 cut(s) 813
BccI CCATC 1 cut(s) 1033
BceAI ACGGC 3 cut(s) 791, 948, 1091
BciT130I CCWGG 1 cut(s) 725
BclI TGATCA 2 cut(s) 201, 256
BcoDI GTCTC 2 cut(s) 324, 1275
BcuI ACTAGT 3 cut(s) 430, 442, 874
BfaI CTAG 8 cut(s) 314, 425, 431, 443, 539, 875, 891, 1303
BfmI CTRYAG 2 cut(s) 398, 786
BfoI RGCGCY 2 cut(s) 923, 1170
BmcAI AGTACT 2 cut(s) 462, 482
Bme1390I CCNGG 1 cut(s) 725
Bme18I GGWCC 2 cut(s) 894, 1059
BmeT110I CYCGRG 2 cut(s) 404, 763
BmgT120I GGNCC 2 cut(s) 894, 1059
BmiI GGNNCC 3 cut(s) 177, 921, 1006
BmrFI CCNGG 1 cut(s) 725
BmsI GCATC 2 cut(s) 677, 781
BpiI GAAGAC 1 cut(s) 813
BplI GAGNNNNNCTC 2 cut(s) 450, 482
BpmI CTGGAG 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 15
Bpu14I TTCGAA 1 cut(s) 597
BsaAI YACGTR 1 cut(s) 310
BsaHI GRCGYC 1 cut(s) 920
BsaI GGTCTC 1 cut(s) 1275
BsaJI CCNNGG 3 cut(s) 171, 724, 1090
BsaWI WCCGGW 1 cut(s) 1007
BsaXI ACNNNNNCTCC 4 cut(s) 1087, 1117, 1236, 1266
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 542, 655
Bse118I RCCGGY 1 cut(s) 1007
Bse1I ACTGG 3 cut(s) 59, 137, 1207
Bse3DI GCAATG 2 cut(s) 1021, 1138
BseBI CCWGG 1 cut(s) 725
BseDI CCNNGG 3 cut(s) 171, 724, 1090
BseLI CCNNNNNNNGG 3 cut(s) 90, 542, 655
BseMI GCAATG 2 cut(s) 1021, 1138
BseMII CTCAG 5 cut(s) 6, 221, 752, 1196, 1286
BseNI ACTGG 3 cut(s) 59, 137, 1207
BseRI GAGGAG 2 cut(s) 791, 794
BsgI GTGCAG 1 cut(s) 1231
Bsh1236I CGCG 1 cut(s) 906
BshFI GGCC 1 cut(s) 78
BshNI GGYRCC 2 cut(s) 919, 1004
BshTI ACCGGT 1 cut(s) 1007
BsiHKCI CYCGRG 2 cut(s) 404, 763
BsiSI CCGG 2 cut(s) 1008, 1170
BslI CCNNNNNNNGG 3 cut(s) 90, 542, 655
BsmAI GTCTC 2 cut(s) 324, 1275
BsmI GAATGC 3 cut(s) 99, 623, 1020
BsnI GGCC 1 cut(s) 78
Bso31I GGTCTC 1 cut(s) 1275
BsoBI CYCGRG 2 cut(s) 404, 763
Bsp119I TTCGAA 1 cut(s) 597
Bsp143I GATC 5 cut(s) 55, 160, 201, 256, 729
Bsp19I CCATGG 1 cut(s) 171
BspACI CCGC 2 cut(s) 611, 615
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 5 cut(s) 7, 220, 751, 1195, 1285
BspFNI CGCG 1 cut(s) 906
BspLI GGNNCC 3 cut(s) 177, 921, 1006
BspMAI CTGCAG 2 cut(s) 402, 790
BspPI GGATC 3 cut(s) 50, 155, 737
BspT104I TTCGAA 1 cut(s) 597
BspT107I GGYRCC 2 cut(s) 919, 1004
BspTNI GGTCTC 1 cut(s) 1275
BsrDI GCAATG 2 cut(s) 1021, 1138
BsrFI RCCGGY 1 cut(s) 1007
BsrI ACTGG 3 cut(s) 59, 137, 1207
BssAI RCCGGY 1 cut(s) 1007
BssECI CCNNGG 3 cut(s) 171, 724, 1090
BssMI GATC 5 cut(s) 55, 160, 201, 256, 729
BssNI GRCGYC 1 cut(s) 920
BssSI CACGAG 3 cut(s) 321, 516, 1149
BssT1I CCWWGG 1 cut(s) 171
Bst2BI CACGAG 3 cut(s) 321, 516, 1149
Bst2UI CCWGG 1 cut(s) 725
Bst4CI ACNGT 1 cut(s) 378
Bst6I CTCTTC 3 cut(s) 195, 471, 570
BstACI GRCGYC 1 cut(s) 920
BstAPI GCANNNNNTGC 1 cut(s) 794
BstBAI YACGTR 1 cut(s) 310
BstBI TTCGAA 1 cut(s) 597
BstC8I GCNNGC 3 cut(s) 114, 507, 613
BstDEI CTNAG 7 cut(s) 15, 68, 207, 738, 1182, 1256, 1272
BstDSI CCRYGG 1 cut(s) 171
BstENI CCTNNNNNAGG 2 cut(s) 88, 653
BstFNI CGCG 1 cut(s) 906
BstH2I RGCGCY 2 cut(s) 923, 1170
BstHHI GCGC 4 cut(s) 511, 906, 922, 1169
BstKTI GATC 5 cut(s) 58, 163, 204, 259, 732
BstMAI GTCTC 2 cut(s) 324, 1275
BstMBI GATC 5 cut(s) 55, 160, 201, 256, 729
BstNI CCWGG 1 cut(s) 725
BstNSI RCATGY 2 cut(s) 135, 865
BstSCI CCNGG 1 cut(s) 723
BstSFI CTRYAG 2 cut(s) 398, 786
BstUI CGCG 1 cut(s) 906
BstV2I GAAGAC 1 cut(s) 813
BstX2I RGATCY 2 cut(s) 55, 729
BstYI RGATCY 2 cut(s) 55, 729
BsuRI GGCC 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 171
BtsIMutI CAGTG 4 cut(s) 66, 215, 478, 1214
Cac8I GCNNGC 3 cut(s) 114, 507, 613
CaiI CAGNNNCTG 2 cut(s) 214, 794
CfoI GCGC 4 cut(s) 511, 906, 922, 1169
Cfr10I RCCGGY 1 cut(s) 1007
Cfr13I GGNCC 2 cut(s) 894, 1059
Csp6I GTAC 4 cut(s) 311, 409, 461, 481
CspAI ACCGGT 1 cut(s) 1007
CviAII CATG 5 cut(s) 132, 172, 862, 1025, 1079
CviQI GTAC 4 cut(s) 311, 409, 461, 481
DdeI CTNAG 7 cut(s) 15, 68, 207, 738, 1182, 1256, 1272
DinI GGCGCC 1 cut(s) 921
DpnI GATC 5 cut(s) 57, 162, 203, 258, 731
DpnII GATC 5 cut(s) 55, 160, 201, 256, 729
DraIII CACNNNGTG 1 cut(s) 210
Eam1104I CTCTTC 3 cut(s) 195, 471, 570
EarI CTCTTC 3 cut(s) 195, 471, 570
Eco130I CCWWGG 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 1275
Eco47I GGWCC 2 cut(s) 894, 1059
Eco88I CYCGRG 2 cut(s) 404, 763
EcoNI CCTNNNNNAGG 2 cut(s) 88, 653
EcoRII CCWGG 1 cut(s) 723
EcoT14I CCWWGG 1 cut(s) 171
EgeI GGCGCC 1 cut(s) 921
EheI GGCGCC 1 cut(s) 921
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 5 cut(s) 135, 175, 865, 1028, 1082
FatI CATG 5 cut(s) 131, 171, 861, 1024, 1078
FauI CCCGC 1 cut(s) 604
FbaI TGATCA 2 cut(s) 201, 256
FspBI CTAG 8 cut(s) 314, 425, 431, 443, 539, 875, 891, 1303
GlaI GCGC 4 cut(s) 510, 905, 921, 1168
GsuI CTGGAG 1 cut(s) 62
HaeII RGCGCY 2 cut(s) 923, 1170
HaeIII GGCC 1 cut(s) 78
HapII CCGG 2 cut(s) 1008, 1170
HhaI GCGC 4 cut(s) 511, 906, 922, 1169
Hin1I GRCGYC 1 cut(s) 920
Hin1II CATG 5 cut(s) 135, 175, 865, 1028, 1082
Hin6I GCGC 4 cut(s) 509, 904, 920, 1167
HinP1I GCGC 4 cut(s) 509, 904, 920, 1167
HincII GTYRAC 2 cut(s) 813, 1179
HindII GTYRAC 2 cut(s) 813, 1179
HindIII AAGCTT 2 cut(s) 152, 913
HpaII CCGG 2 cut(s) 1008, 1170
HphI GGTGA 3 cut(s) 160, 366, 752
Hpy166II GTNNAC 3 cut(s) 381, 813, 1179
Hpy188I TCNGA 9 cut(s) 129, 180, 253, 525, 632, 673, 775, 803, 854
Hpy188III TCNNGA 6 cut(s) 41, 323, 337, 449, 733, 1274
Hpy8I GTNNAC 3 cut(s) 381, 813, 1179
HpyAV CCTTC 2 cut(s) 343, 1225
HpyCH4III ACNGT 1 cut(s) 378
HpyCH4IV ACGT 1 cut(s) 309
HpyF3I CTNAG 7 cut(s) 15, 68, 207, 738, 1182, 1256, 1272
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 1 cut(s) 920
Hsp92II CATG 5 cut(s) 135, 175, 865, 1028, 1082
HspAI GCGC 4 cut(s) 509, 904, 920, 1167
KasI GGCGCC 1 cut(s) 919
Ksp22I TGATCA 2 cut(s) 201, 256
Kzo9I GATC 5 cut(s) 55, 160, 201, 256, 729
LmnI GCTCC 1 cut(s) 43
LweI GCATC 2 cut(s) 677, 781
MaeI CTAG 8 cut(s) 314, 425, 431, 443, 539, 875, 891, 1303
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 7 cut(s) 61, 139, 263, 877, 1108, 1185, 1242
MalI GATC 5 cut(s) 57, 162, 203, 258, 731
MboI GATC 5 cut(s) 55, 160, 201, 256, 729
MboII GAAGA 7 cut(s) 182, 363, 488, 587, 749, 813, 842
MflI RGATCY 2 cut(s) 55, 729
MluCI AATT 7 cut(s) 33, 385, 584, 753, 939, 977, 1286
Mly113I GGCGCC 1 cut(s) 920
MlyI GAGTC 6 cut(s) 58, 326, 730, 851, 1174, 1271
MseI TTAA 4 cut(s) 866, 984, 1035, 1289
MslI CAYNNNNRTG 2 cut(s) 252, 765
MspA1I CMGCKG 1 cut(s) 742
MspI CCGG 2 cut(s) 1008, 1170
MspR9I CCNGG 1 cut(s) 725
Mva1269I GAATGC 3 cut(s) 99, 623, 1020
MvaI CCWGG 1 cut(s) 725
MvnI CGCG 1 cut(s) 906
NarI GGCGCC 1 cut(s) 920
NcoI CCATGG 1 cut(s) 171
NdeII GATC 5 cut(s) 55, 160, 201, 256, 729
NlaIII CATG 5 cut(s) 135, 175, 865, 1028, 1082
NlaIV GGNNCC 3 cut(s) 177, 921, 1006
NmuCI GTSAC 4 cut(s) 61, 139, 263, 877
NspI RCATGY 2 cut(s) 135, 865
NspV TTCGAA 1 cut(s) 597
OliI CACNNNNGTG 1 cut(s) 765
PceI AGGCCT 1 cut(s) 78
PciI ACATGT 1 cut(s) 131
PctI GAATGC 3 cut(s) 99, 623, 1020
PfeI GAWTC 6 cut(s) 181, 244, 287, 633, 770, 1136
PinAI ACCGGT 1 cut(s) 1007
PleI GAGTC 6 cut(s) 58, 325, 730, 850, 1174, 1271
PluTI GGCGCC 1 cut(s) 923
PpsI GAGTC 6 cut(s) 58, 325, 730, 850, 1174, 1271
Ppu21I YACGTR 1 cut(s) 310
PscI ACATGT 1 cut(s) 131
PshBI ATTAAT 1 cut(s) 1289
Psp6I CCWGG 1 cut(s) 723
PspGI CCWGG 1 cut(s) 723
PspN4I GGNNCC 3 cut(s) 177, 921, 1006
PspPI GGNCC 2 cut(s) 894, 1059
PstI CTGCAG 2 cut(s) 402, 790
PstNI CAGNNNCTG 2 cut(s) 214, 794
PsuI RGATCY 2 cut(s) 55, 729
PvuII CAGCTG 1 cut(s) 742
RsaI GTAC 4 cut(s) 312, 410, 462, 482
RsaNI GTAC 4 cut(s) 311, 409, 461, 481
RseI CAYNNNNRTG 2 cut(s) 252, 765
SaqAI TTAA 4 cut(s) 866, 984, 1035, 1289
Sau3AI GATC 5 cut(s) 55, 160, 201, 256, 729
Sau96I GGNCC 2 cut(s) 894, 1059
ScaI AGTACT 2 cut(s) 462, 482
SchI GAGTC 6 cut(s) 58, 326, 730, 851, 1174, 1271
ScrFI CCNGG 1 cut(s) 725
SfaNI GCATC 2 cut(s) 677, 781
SfcI CTRYAG 2 cut(s) 398, 786
SfoI GGCGCC 1 cut(s) 921
SfuI TTCGAA 1 cut(s) 597
SgrAI CRCCGGYG 1 cut(s) 1007
SinI GGWCC 2 cut(s) 894, 1059
SmiMI CAYNNNNRTG 2 cut(s) 252, 765
SpeI ACTAGT 3 cut(s) 430, 442, 874
Sse9I AATT 7 cut(s) 33, 385, 584, 753, 939, 977, 1286
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 2 cut(s) 611, 615
SspDI GGCGCC 1 cut(s) 919
SspI AATATT 1 cut(s) 565
SspMI CTAG 8 cut(s) 314, 425, 431, 443, 539, 875, 891, 1303
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 723
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 378
TaiI ACGT 1 cut(s) 312
TaqI TCGA 6 cut(s) 95, 242, 336, 357, 552, 597
TaqII GACCGA 1 cut(s) 911
TasI AATT 7 cut(s) 33, 385, 584, 753, 939, 977, 1286
TatI WGTACW 2 cut(s) 460, 480
TauI GCSGC 1 cut(s) 618
TfiI GAWTC 6 cut(s) 181, 244, 287, 633, 770, 1136
Tru1I TTAA 4 cut(s) 866, 984, 1035, 1289
Tru9I TTAA 4 cut(s) 866, 984, 1035, 1289
TscAI CASTG 4 cut(s) 66, 215, 478, 1214
TseFI GTSAC 4 cut(s) 61, 139, 263, 877
Tsp45I GTSAC 4 cut(s) 61, 139, 263, 877
TspDTI ATGAA 4 cut(s) 357, 616, 1013, 1095
TspRI CASTG 4 cut(s) 66, 215, 478, 1214
VpaK11BI GGWCC 2 cut(s) 894, 1059
VspI ATTAAT 1 cut(s) 1289
XagI CCTNNNNNAGG 2 cut(s) 88, 653
XceI RCATGY 2 cut(s) 135, 865
XspI CTAG 8 cut(s) 314, 425, 431, 443, 539, 875, 891, 1303
ZrmI AGTACT 2 cut(s) 462, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.