Rorug02G0283600

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014019
Physical Location & Seq
Forward (+)
30840372 .. 30844298
3927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0283600.1

Sequence Viewer

Length: 678 bp
ATGGGCGCATGTAAAGCACCCATTCCCAATCTTCTCCTCACCTCTTCTTCTTCCTCCTCCTCCTCAACCCAAAAAACCCTAATTCCCATTTCCAGAACCCCATTACTTACGAGGCGGTTGGTCCTCCTGTCTCTCCCTCTAGCTAACTTTCTGCTTCCAAGTAACAGCAGTGCTGTTGATGCAATCGAGTCCACTTCTGCTGTCGTCACAACCTTCAACCCAATCAGTGATGCGGAGAGAGACGCAAGTGCTGCCATTTCCCGGAGAATATCTGAAGCCTTGGACTTGTTGGAGAGAGGGAGGGACTTCCAGGCCCGCGGTGACTTTGACCAAGCTCTTCTCAGCTTTACTCAGGTGATTGAGAAGTACAAGGAATTTGCATTTTCAGACTATGCAAGAGTAGGCAGAGCACTGACTTTGTATGAAGTTGGCAACAGAGATGATGCAATTGCAGAGATGGAGGATGTTTCCATGTCTTTGAAGGGATATCCAGAAGTGCATGCAGCTCTGGCCGCAGCGTTGTATGTAGACAAACATGCTCCACTGCTCGCAGAAAACCAGTTCACAATTGCAACTCTTCTTGATCCTCACTATACAGACCTCTCATACGTAAAAGACACAAAACATTGGCCTCCGAGTTTGGTTAGTTCATTGCAACACTTTATCACACTTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

225

Amino Acids

24.61

Weight (kDa)

5.35

Isoelectric Point (pI)

36.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014019)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06240
fragaria_vesca FvH4_6g27080 FvH4_6g27080
malus_domestica MD09G1240300.v1.1
prunus_persica Prupe.3G124300_v2.0.a1
pyrus_communis pycom09g15890
rosa_chinensis RchiOBHm_Chr2g0129041
rosa_laevigata RLG00000019046
rosa_multiflora Rmu_co8451771.1_g000001
rosa_roxburghii Rroxscaffold_2G00114940
rosa_rugosa Rorug02G0283600 Rorug02G0283700
rosa_samantha Rh2AG336100 Rh2BG344100 Rh2CG323000 Rh2DG360700
rosa_wichuraiana Rw2G027250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 528
AccII CGCG 1 cut(s) 318
AciI CCGC 5 cut(s) 115, 233, 316, 318, 513
AclWI GGATC 1 cut(s) 578
AcoI YGGCCR 1 cut(s) 510
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 261
AgsI TTSAA 2 cut(s) 217, 481
AjnI CCWGG 1 cut(s) 309
AluBI AGCT 4 cut(s) 143, 335, 345, 506
AluI AGCT 4 cut(s) 143, 335, 345, 506
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 2 cut(s) 135, 234
AlwI GGATC 1 cut(s) 578
AoxI GGCC 3 cut(s) 312, 510, 629
ApeKI GCWGC 3 cut(s) 251, 503, 515
ApoI RAATTY 1 cut(s) 374
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 121, 313
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 3 cut(s) 31, 332, 367
AvaII GGWCC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 3 cut(s) 238, 515, 527
BccI CCATC 1 cut(s) 451
BciT130I CCWGG 1 cut(s) 311
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 2 cut(s) 135, 234
BfaI CTAG 2 cut(s) 140, 676
BisI GCNGC 4 cut(s) 252, 504, 513, 516
BlsI GCNGC 4 cut(s) 253, 505, 514, 517
Bme1390I CCNGG 2 cut(s) 262, 311
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 121, 313
BmrFI CCNGG 2 cut(s) 262, 311
BmsI GCATC 3 cut(s) 169, 220, 433
BpuMI CCSGG 1 cut(s) 262
BsaAI YACGTR 1 cut(s) 610
BsaJI CCNNGG 2 cut(s) 279, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 559
Bse3DI GCAATG 1 cut(s) 650
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 2 cut(s) 279, 316
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMI GCAATG 1 cut(s) 650
BseMII CTCAG 2 cut(s) 355, 365
BseNI ACTGG 1 cut(s) 559
BseRI GAGGAG 4 cut(s) 26, 46, 49, 52
BseXI GCAGC 3 cut(s) 238, 515, 527
Bsh1236I CGCG 1 cut(s) 318
BshFI GGCC 3 cut(s) 314, 512, 631
BsiHKAI GWGCWC 1 cut(s) 412
BsiSI CCGG 1 cut(s) 262
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 261
BsmAI GTCTC 2 cut(s) 135, 234
BsmBI CGTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 3 cut(s) 314, 512, 631
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 1 cut(s) 583
BspACI CCGC 5 cut(s) 115, 233, 316, 318, 513
BspANI GGCC 3 cut(s) 314, 512, 631
BspCNI CTCAG 2 cut(s) 354, 364
BspFNI CGCG 1 cut(s) 318
BspPI GGATC 1 cut(s) 578
BspQI GCTCTTC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 650
BsrI ACTGG 1 cut(s) 559
BssECI CCNNGG 2 cut(s) 279, 316
BssMI GATC 1 cut(s) 583
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 311
Bst6I CTCTTC 3 cut(s) 49, 342, 582
BstAPI GCANNNNNTGC 1 cut(s) 251
BstBAI YACGTR 1 cut(s) 610
BstC8I GCNNGC 3 cut(s) 316, 501, 549
BstDEI CTNAG 2 cut(s) 341, 351
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 1 cut(s) 469
BstFNI CGCG 1 cut(s) 318
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 1 cut(s) 586
BstMAI GTCTC 2 cut(s) 135, 234
BstMBI GATC 1 cut(s) 583
BstMWI GCNNNNNNNGC 5 cut(s) 14, 179, 251, 509, 512
BstNI CCWGG 1 cut(s) 311
BstNSI RCATGY 3 cut(s) 12, 503, 539
BstSCI CCNGG 2 cut(s) 260, 309
BstSNI TACGTA 1 cut(s) 610
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 3 cut(s) 238, 515, 527
BsuRI GGCC 3 cut(s) 314, 512, 631
BtgI CCRYGG 1 cut(s) 316
BtsCI GGATG 1 cut(s) 469
BtsI GCAGTG 2 cut(s) 175, 542
BtsIMutI CAGTG 4 cut(s) 175, 232, 410, 542
Cac8I GCNNGC 3 cut(s) 316, 501, 549
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 121, 313
Cfr42I CCGCGG 1 cut(s) 319
CseI GACGC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 367
CviAII CATG 4 cut(s) 9, 472, 500, 536
CviJI RGCY 8 cut(s) 143, 278, 314, 335, 345, 506, 512, 631
CviKI_1 RGCY 8 cut(s) 143, 278, 314, 335, 345, 506, 512, 631
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 2 cut(s) 341, 351
DpnI GATC 1 cut(s) 585
DpnII GATC 1 cut(s) 583
EaeI YGGCCR 1 cut(s) 510
Eam1104I CTCTTC 3 cut(s) 49, 342, 582
EarI CTCTTC 3 cut(s) 49, 342, 582
Eco105I TACGTA 1 cut(s) 610
Eco130I CCWWGG 1 cut(s) 279
Eco32I GATATC 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 309
EcoRV GATATC 1 cut(s) 488
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 4 cut(s) 12, 475, 503, 539
FaiI YATR 9 cut(s) 10, 393, 423, 473, 501, 525, 537, 594, 607
FaqI GGGAC 1 cut(s) 317
FatI CATG 4 cut(s) 8, 471, 499, 535
FauI CCCGC 1 cut(s) 323
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 4 cut(s) 252, 504, 513, 516
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 4 cut(s) 252, 504, 513, 516
FspBI CTAG 2 cut(s) 140, 676
GlaI GCGC 1 cut(s) 7
GluI GCNGC 4 cut(s) 252, 504, 513, 516
HaeIII GGCC 3 cut(s) 314, 512, 631
HapII CCGG 1 cut(s) 262
HgaI GACGC 1 cut(s) 251
HhaI GCGC 1 cut(s) 8
Hin1II CATG 4 cut(s) 12, 475, 503, 539
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 1 cut(s) 188
HpaII CCGG 1 cut(s) 262
HphI GGTGA 3 cut(s) 31, 332, 367
Hpy166II GTNNAC 3 cut(s) 192, 529, 564
Hpy188I TCNGA 3 cut(s) 274, 388, 636
Hpy188III TCNNGA 3 cut(s) 93, 491, 581
Hpy8I GTNNAC 3 cut(s) 192, 529, 564
HpyAV CCTTC 2 cut(s) 223, 475
HpyCH4IV ACGT 1 cut(s) 609
HpyCH4V TGCA 9 cut(s) 182, 380, 395, 446, 452, 499, 503, 572, 655
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 179, 251, 509, 512
HpyF3I CTNAG 2 cut(s) 341, 351
HpySE526I ACGT 1 cut(s) 609
Hsp92II CATG 4 cut(s) 12, 475, 503, 539
HspAI GCGC 1 cut(s) 6
KspI CCGCGG 1 cut(s) 319
Kzo9I GATC 1 cut(s) 583
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 1 cut(s) 544
LpnPI CCDG 9 cut(s) 106, 140, 275, 296, 323, 338, 494, 504, 572
Lsp1109I GCAGC 3 cut(s) 238, 515, 527
LweI GCATC 3 cut(s) 169, 220, 433
MaeI CTAG 2 cut(s) 140, 676
MaeII ACGT 1 cut(s) 609
MaeIII GTNAC 3 cut(s) 161, 205, 320
MalI GATC 1 cut(s) 585
MboI GATC 1 cut(s) 583
MboII GAAGA 6 cut(s) 23, 36, 39, 42, 329, 569
MfeI CAATTG 2 cut(s) 447, 567
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 4 cut(s) 81, 374, 447, 567
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 318
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 2 cut(s) 262, 311
MunI CAATTG 2 cut(s) 447, 567
MvaI CCWGG 1 cut(s) 311
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 5 cut(s) 14, 179, 251, 509, 512
NciI CCSGG 1 cut(s) 262
NdeII GATC 1 cut(s) 583
NlaIII CATG 4 cut(s) 12, 475, 503, 539
NmuCI GTSAC 2 cut(s) 205, 320
NspI RCATGY 3 cut(s) 12, 503, 539
PaeI GCATGC 1 cut(s) 503
PciSI GCTCTTC 1 cut(s) 342
PfoI TCCNGGA 1 cut(s) 260
PkrI GCNGC 4 cut(s) 253, 505, 514, 517
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Ppu21I YACGTR 1 cut(s) 610
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspPI GGNCC 2 cut(s) 121, 313
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SacII CCGCGG 1 cut(s) 319
SapI GCTCTTC 1 cut(s) 342
SatI GCNGC 4 cut(s) 252, 504, 513, 516
Sau3AI GATC 1 cut(s) 583
Sau96I GGNCC 2 cut(s) 121, 313
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 2 cut(s) 262, 311
SduI GDGCHC 1 cut(s) 412
SetI ASST 9 cut(s) 44, 145, 215, 337, 347, 357, 508, 603, 612
SfaNI GCATC 3 cut(s) 169, 220, 433
Sfr303I CCGCGG 1 cut(s) 319
SgrBI CCGCGG 1 cut(s) 319
SinI GGWCC 1 cut(s) 121
SnaBI TACGTA 1 cut(s) 610
SphI GCATGC 1 cut(s) 503
Sse9I AATT 4 cut(s) 81, 374, 447, 567
SsiI CCGC 5 cut(s) 115, 233, 316, 318, 513
SspMI CTAG 2 cut(s) 140, 676
StyD4I CCNGG 2 cut(s) 260, 309
StyI CCWWGG 1 cut(s) 279
TaiI ACGT 1 cut(s) 612
TaqI TCGA 1 cut(s) 186
TasI AATT 4 cut(s) 81, 374, 447, 567
TatI WGTACW 1 cut(s) 366
TauI GCSGC 1 cut(s) 515
TscAI CASTG 4 cut(s) 175, 232, 417, 549
TseFI GTSAC 2 cut(s) 205, 320
TseI GCWGC 3 cut(s) 251, 503, 515
Tsp45I GTSAC 2 cut(s) 205, 320
TspDTI ATGAA 2 cut(s) 438, 639
TspRI CASTG 4 cut(s) 175, 232, 417, 549
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 1 cut(s) 374
XceI RCATGY 3 cut(s) 12, 503, 539
XmiI GTMKAC 1 cut(s) 528
XspI CTAG 2 cut(s) 140, 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.