RchiOBHm_Chr2g0129041

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014019
Physical Location & Seq
Forward (+)
44638794 .. 44644585
5792 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50073

Sequence Viewer

Length: 1131 bp
ATGCAGCGTCTCAAACTCCACCACATGCTCTCTCCTCCATCGTGCTCCTCCCATGCTGCTTTGTTATCATCATGCCTCAGAACCAAGTCTCTTTCCTCTTCTTGTATGCAACCCTCACCCTGGTCTGGTCTCGAAACCTGGAGGAATAGCCCCCTGAATGAGAACCGTTGCTGGGGACCCAAGGGCCCCCAAACGATTGGCAACGCCGACACTCCACCGGTGTCGTCGGCTTCCTCTCTTGCAGAGCTTGGTGCTCTCGTTCTCTCCACCAGTGACCCCCTCGCCAAGTCCAACCTTTCCCACATCGCTTACTTCACGTGGCGCCAACACAACCTTCCACTTGGTGCATGCCAACCTCCTCCTCGTCCTGCCCGCCCTCTGAAACCCCAACTGGTTCATCCGAAAGAAATTCCAGCTCCCAAGAACTCGGGTTTGCCTCTCAATGCGTATATGCTTCATAATCTTGCACATGTTGAGCTCAATGCGATTGATTTAGCATGGGATACTGTTGTCCGTTTCTCTCCTTTTAGTGAGATTCTAGGCGAAGGGTTTTTCGCTGACTTTGCTCACGTCGCCGACGATGAGAGTCGCCATTTTGCTTGGTGTTCTCAGAGGCTTGCCGAACTTGGTTTCAAGTATGGAGATATGCCTGCTCATAATCTGCTCTGGAGGGAGTGTGAGAAATCATCTGACAATGTTGCTGCACGTTTGGCTGTCATACCACTGGTCCAGGAGGCCAGAGGACTAGATGCTGGACCACGACTTGTGCAAAAATTGGTTGGCTTCGGAGATCTCAGGACATCTGAAATCGTAGCTAGAATTGCTAATGAAGAAGTGGCACATGTAGCTGTTGGTGTCCACTGGTTTGTCAGTGTCTGTCAGAAATTAGGTTGCGCACCGTCTTCTGCATTTAAAGACTTGTTAGAAGATTATAACGTTGAGTTGAAAGGGCCCTTCAATTATTCAGCTCGTGATGAAGCTGGCATTCCTCGTGATTGGTATGATTTATCTACAAATAACAAGGACAAGAACAAGAAAAGGGCTAACAGTGAGAAGCTTTCTGAGGTGTATGAGAGGCTTGCTTCCATAATTTCCATGGAGAGTGAGAACTCGAGTTTGAACAGGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

376

Amino Acids

41.54

Weight (kDa)

6.89

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF455 PF04305 90 - 335 5.1e-85 Protein of unknown function (DUF455)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014019)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06240
fragaria_vesca FvH4_6g27080 FvH4_6g27080
malus_domestica MD09G1240300.v1.1
prunus_persica Prupe.3G124300_v2.0.a1
pyrus_communis pycom09g15890
rosa_chinensis RchiOBHm_Chr2g0129041
rosa_laevigata RLG00000019046
rosa_multiflora Rmu_co8451771.1_g000001
rosa_roxburghii Rroxscaffold_2G00114940
rosa_rugosa Rorug02G0283600 Rorug02G0283700
rosa_samantha Rh2AG336100 Rh2BG344100 Rh2CG323000 Rh2DG360700
rosa_wichuraiana Rw2G027250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 933
Acc16I TGCGCA 1 cut(s) 895
AccB1I GGYRCC 1 cut(s) 321
AciI CCGC 1 cut(s) 373
AclI AACGTT 1 cut(s) 936
AcsI RAATTY 1 cut(s) 408
AcvI CACGTG 1 cut(s) 318
AcyI GRCGYC 1 cut(s) 322
AdeI CACNNNGTG 1 cut(s) 344
AfiI CCNNNNNNNGG 3 cut(s) 120, 125, 172
AflIII ACRYGT 2 cut(s) 469, 841
AgeI ACCGGT 1 cut(s) 217
AgsI TTSAA 4 cut(s) 634, 946, 958, 1120
AjiI CACGTC 1 cut(s) 571
AjnI CCWGG 3 cut(s) 119, 137, 729
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 8 cut(s) 247, 416, 478, 815, 848, 968, 980, 1057
AluI AGCT 8 cut(s) 247, 416, 478, 815, 848, 968, 980, 1057
Alw21I GWGCWC 3 cut(s) 47, 256, 480
Alw26I GTCTC 3 cut(s) 14, 93, 134
AlwNI CAGNNNCTG 1 cut(s) 876
Ama87I CYCGRG 2 cut(s) 427, 1111
AoxI GGCC 4 cut(s) 184, 735, 950, 1124
ApaI GGGCCC 2 cut(s) 188, 954
ApeKI GCWGC 3 cut(s) 4, 56, 701
ApoI RAATTY 1 cut(s) 408
AsiGI ACCGGT 1 cut(s) 217
AspLEI GCGC 2 cut(s) 324, 896
AspS9I GGNCC 7 cut(s) 176, 184, 185, 727, 755, 950, 951
AsuHPI GGTGA 1 cut(s) 108
AvaI CYCGRG 2 cut(s) 427, 1111
AvaII GGWCC 3 cut(s) 176, 727, 755
BaeGI GKGCMC 2 cut(s) 188, 954
BaeI ACNNNNGTAYC 2 cut(s) 495, 528
BanI GGYRCC 1 cut(s) 321
BanII GRGCYC 3 cut(s) 188, 480, 954
BauI CACGAG 2 cut(s) 969, 990
BbrPI CACGTG 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 894
Bbv12I GWGCWC 3 cut(s) 47, 256, 480
BbvI GCAGC 3 cut(s) 16, 43, 688
BccI CCATC 1 cut(s) 46
BciT130I CCWGG 3 cut(s) 121, 139, 731
BciVI GTATCC 1 cut(s) 496
BcoDI GTCTC 3 cut(s) 14, 93, 134
BfaI CTAG 3 cut(s) 539, 746, 816
BfoI RGCGCY 1 cut(s) 325
BfuI GTATCC 1 cut(s) 496
BglII AGATCT 1 cut(s) 790
BisI GCNGC 3 cut(s) 5, 57, 702
BlsI GCNGC 3 cut(s) 6, 58, 703
Bme1390I CCNGG 3 cut(s) 121, 139, 731
Bme18I GGWCC 3 cut(s) 176, 727, 755
BmeT110I CYCGRG 2 cut(s) 427, 1111
BmgBI CACGTC 1 cut(s) 571
BmgT120I GGNCC 7 cut(s) 176, 184, 185, 727, 755, 950, 951
BmiI GGNNCC 6 cut(s) 177, 178, 186, 187, 323, 952
BmrFI CCNGG 3 cut(s) 121, 139, 731
BmsI GCATC 1 cut(s) 739
BpiI GAAGAC 1 cut(s) 894
BpmI CTGGAG 2 cut(s) 160, 688
BsaAI YACGTR 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 322
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 3 cut(s) 119, 180, 1095
BsaWI WCCGGW 1 cut(s) 217
BsaXI ACNNNNNCTCC 2 cut(s) 661, 691
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 125, 172
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 4 cut(s) 270, 396, 729, 866
BseBI CCWGG 3 cut(s) 121, 139, 731
BseDI CCNNGG 3 cut(s) 119, 180, 1095
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 3 cut(s) 120, 125, 172
BseMII CTCAG 4 cut(s) 91, 623, 808, 1053
BseNI ACTGG 4 cut(s) 270, 396, 729, 866
BseRI GAGGAG 4 cut(s) 24, 37, 348, 351
BseSI GKGCMC 2 cut(s) 188, 954
BseXI GCAGC 3 cut(s) 16, 43, 688
BseYI CCCAGC 1 cut(s) 171
BsgI GTGCAG 1 cut(s) 687
BshFI GGCC 4 cut(s) 186, 737, 952, 1126
BshNI GGYRCC 1 cut(s) 321
BshTI ACCGGT 1 cut(s) 217
BsiHKAI GWGCWC 3 cut(s) 47, 256, 480
BsiHKCI CYCGRG 2 cut(s) 427, 1111
BsiSI CCGG 1 cut(s) 218
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 3 cut(s) 120, 125, 172
BsmAI GTCTC 3 cut(s) 14, 93, 134
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 984
BsnI GGCC 4 cut(s) 186, 737, 952, 1126
Bso31I GGTCTC 1 cut(s) 134
BsoBI CYCGRG 2 cut(s) 427, 1111
Bsp120I GGGCCC 2 cut(s) 184, 950
Bsp1286I GDGCHC 5 cut(s) 47, 188, 256, 480, 954
Bsp143I GATC 1 cut(s) 790
Bsp19I CCATGG 1 cut(s) 1095
BspACI CCGC 1 cut(s) 373
BspANI GGCC 4 cut(s) 186, 737, 952, 1126
BspCNI CTCAG 4 cut(s) 90, 622, 807, 1054
BspLI GGNNCC 6 cut(s) 177, 178, 186, 187, 323, 952
BspT107I GGYRCC 1 cut(s) 321
BspTNI GGTCTC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 4 cut(s) 270, 396, 729, 866
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 3 cut(s) 119, 180, 1095
BssMI GATC 1 cut(s) 790
BssNI GRCGYC 1 cut(s) 322
BssSI CACGAG 2 cut(s) 969, 990
BssT1I CCWWGG 2 cut(s) 180, 1095
Bst2BI CACGAG 2 cut(s) 969, 990
Bst2UI CCWGG 3 cut(s) 121, 139, 731
Bst4CI ACNGT 4 cut(s) 167, 508, 900, 1049
Bst6I CTCTTC 1 cut(s) 103
BstACI GRCGYC 1 cut(s) 322
BstBAI YACGTR 1 cut(s) 318
BstC8I GCNNGC 6 cut(s) 349, 373, 618, 651, 982, 1080
BstDEI CTNAG 5 cut(s) 77, 609, 794, 1062, 1128
BstDSI CCRYGG 1 cut(s) 1095
BstF5I GGATG 1 cut(s) 397
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 2 cut(s) 324, 896
BstKTI GATC 1 cut(s) 793
BstMAI GTCTC 3 cut(s) 14, 93, 134
BstMBI GATC 1 cut(s) 790
BstMWI GCNNNNNNNGC 5 cut(s) 563, 572, 710, 821, 845
BstNI CCWGG 3 cut(s) 121, 139, 731
BstNSI RCATGY 4 cut(s) 28, 351, 473, 845
BstSCI CCNGG 3 cut(s) 119, 137, 729
BstSLI GKGCMC 2 cut(s) 188, 954
BstV1I GCAGC 3 cut(s) 16, 43, 688
BstV2I GAAGAC 1 cut(s) 894
BstX2I RGATCY 1 cut(s) 790
BstXI CCANNNNNNTGG 1 cut(s) 197
BstYI RGATCY 1 cut(s) 790
BsuI GTATCC 1 cut(s) 496
BsuRI GGCC 4 cut(s) 186, 737, 952, 1126
BtgI CCRYGG 1 cut(s) 1095
BtgZI GCGATG 1 cut(s) 289
BtrI CACGTC 1 cut(s) 571
BtsCI GGATG 1 cut(s) 397
BtsIMutI CAGTG 5 cut(s) 277, 722, 859, 877, 1054
Cac8I GCNNGC 6 cut(s) 349, 373, 618, 651, 982, 1080
CaiI CAGNNNCTG 1 cut(s) 876
CfoI GCGC 2 cut(s) 324, 896
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 7 cut(s) 176, 184, 185, 727, 755, 950, 951
CspAI ACCGGT 1 cut(s) 217
CviAII CATG 8 cut(s) 25, 53, 72, 348, 470, 498, 842, 1096
DdeI CTNAG 5 cut(s) 77, 609, 794, 1062, 1128
DinI GGCGCC 1 cut(s) 323
DpnI GATC 1 cut(s) 792
DpnII GATC 1 cut(s) 790
DraI TTTAAA 1 cut(s) 913
DraIII CACNNNGTG 1 cut(s) 344
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 478
Eco130I CCWWGG 2 cut(s) 180, 1095
Eco147I AGGCCT 1 cut(s) 1126
Eco24I GRGCYC 3 cut(s) 188, 480, 954
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 3 cut(s) 176, 727, 755
Eco53kI GAGCTC 1 cut(s) 478
Eco72I CACGTG 1 cut(s) 318
Eco88I CYCGRG 2 cut(s) 427, 1111
EcoICRI GAGCTC 1 cut(s) 478
EcoO109I RGGNCCY 5 cut(s) 176, 184, 185, 950, 951
EcoRII CCWGG 3 cut(s) 119, 137, 729
EcoT14I CCWWGG 2 cut(s) 180, 1095
EcoT38I GRGCYC 3 cut(s) 188, 480, 954
EgeI GGCGCC 1 cut(s) 323
EheI GGCGCC 1 cut(s) 323
ErhI CCWWGG 2 cut(s) 180, 1095
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 8 cut(s) 28, 56, 75, 351, 473, 501, 845, 1099
FaqI GGGAC 1 cut(s) 189
FatI CATG 8 cut(s) 24, 52, 71, 347, 469, 497, 841, 1095
FauI CCCGC 1 cut(s) 380
Fnu4HI GCNGC 3 cut(s) 5, 57, 702
FokI GGATG 1 cut(s) 384
FriOI GRGCYC 3 cut(s) 188, 480, 954
Fsp4HI GCNGC 3 cut(s) 5, 57, 702
FspBI CTAG 3 cut(s) 539, 746, 816
FspI TGCGCA 1 cut(s) 895
GlaI GCGC 2 cut(s) 323, 895
GluI GCNGC 3 cut(s) 5, 57, 702
GsaI CCCAGC 1 cut(s) 175
GsuI CTGGAG 2 cut(s) 160, 688
HaeII RGCGCY 1 cut(s) 325
HaeIII GGCC 4 cut(s) 186, 737, 952, 1126
HapII CCGG 1 cut(s) 218
HhaI GCGC 2 cut(s) 324, 896
Hin1I GRCGYC 1 cut(s) 322
Hin1II CATG 8 cut(s) 28, 56, 75, 351, 473, 501, 845, 1099
Hin6I GCGC 2 cut(s) 322, 894
HinP1I GCGC 2 cut(s) 322, 894
HindIII AAGCTT 1 cut(s) 1055
HinfI GANTC 2 cut(s) 535, 586
HpaII CCGG 1 cut(s) 218
HphI GGTGA 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 859
Hpy188I TCNGA 9 cut(s) 80, 381, 402, 612, 691, 788, 805, 882, 1063
Hpy188III TCNNGA 5 cut(s) 131, 667, 796, 971, 992
Hpy8I GTNNAC 1 cut(s) 859
Hpy99I CGWCG 3 cut(s) 229, 575, 581
HpyAV CCTTC 3 cut(s) 344, 539, 964
HpyCH4III ACNGT 4 cut(s) 167, 508, 900, 1049
HpyCH4IV ACGT 4 cut(s) 317, 570, 706, 936
HpyCH4V TGCA 8 cut(s) 4, 109, 242, 347, 467, 704, 769, 908
HpyF10VI GCNNNNNNNGC 5 cut(s) 563, 572, 710, 821, 845
HpyF3I CTNAG 5 cut(s) 77, 609, 794, 1062, 1128
HpySE526I ACGT 4 cut(s) 317, 570, 706, 936
Hsp92I GRCGYC 1 cut(s) 322
Hsp92II CATG 8 cut(s) 28, 56, 75, 351, 473, 501, 845, 1099
HspAI GCGC 2 cut(s) 322, 894
KasI GGCGCC 1 cut(s) 321
KflI GGGWCCC 1 cut(s) 176
Kzo9I GATC 1 cut(s) 790
LmnI GCTCC 2 cut(s) 50, 421
Lsp1109I GCAGC 3 cut(s) 16, 43, 688
LweI GCATC 1 cut(s) 739
MaeI CTAG 3 cut(s) 539, 746, 816
MaeII ACGT 4 cut(s) 317, 570, 706, 936
MaeIII GTNAC 1 cut(s) 272
MalI GATC 1 cut(s) 792
MboI GATC 1 cut(s) 790
MboII GAAGA 4 cut(s) 90, 842, 894, 938
MflI RGATCY 1 cut(s) 790
MhlI GDGCHC 5 cut(s) 47, 188, 256, 480, 954
MluCI AATT 6 cut(s) 408, 773, 819, 884, 958, 1089
Mly113I GGCGCC 1 cut(s) 322
MlyI GAGTC 1 cut(s) 595
MmeI TCCRAC 1 cut(s) 315
MseI TTAA 1 cut(s) 912
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 3 cut(s) 121, 139, 731
Mva1269I GAATGC 1 cut(s) 984
MvaI CCWGG 3 cut(s) 121, 139, 731
MwoI GCNNNNNNNGC 5 cut(s) 563, 572, 710, 821, 845
NarI GGCGCC 1 cut(s) 322
NcoI CCATGG 1 cut(s) 1095
NdeII GATC 1 cut(s) 790
NlaIII CATG 8 cut(s) 28, 56, 75, 351, 473, 501, 845, 1099
NlaIV GGNNCC 6 cut(s) 177, 178, 186, 187, 323, 952
NmuCI GTSAC 1 cut(s) 272
NsbI TGCGCA 1 cut(s) 895
NspI RCATGY 4 cut(s) 28, 351, 473, 845
PaeI GCATGC 1 cut(s) 351
PaeR7I CTCGAG 1 cut(s) 1111
PceI AGGCCT 1 cut(s) 1126
PciI ACATGT 2 cut(s) 469, 841
PcsI WCGNNNNNNNCGW 1 cut(s) 576
PctI GAATGC 1 cut(s) 984
PfeI GAWTC 1 cut(s) 535
PfoI TCCNGGA 1 cut(s) 729
PinAI ACCGGT 1 cut(s) 217
PkrI GCNGC 3 cut(s) 6, 58, 703
PleI GAGTC 1 cut(s) 594
PluTI GGCGCC 1 cut(s) 325
PmaCI CACGTG 1 cut(s) 318
PmlI CACGTG 1 cut(s) 318
PpsI GAGTC 1 cut(s) 594
Ppu21I YACGTR 1 cut(s) 318
PpuMI RGGWCCY 1 cut(s) 176
PscI ACATGT 2 cut(s) 469, 841
PsiI TTATAA 1 cut(s) 933
Psp124BI GAGCTC 1 cut(s) 480
Psp1406I AACGTT 1 cut(s) 936
Psp5II RGGWCCY 1 cut(s) 176
Psp6I CCWGG 3 cut(s) 119, 137, 729
PspCI CACGTG 1 cut(s) 318
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 3 cut(s) 119, 137, 729
PspN4I GGNNCC 6 cut(s) 177, 178, 186, 187, 323, 952
PspOMI GGGCCC 2 cut(s) 184, 950
PspPI GGNCC 7 cut(s) 176, 184, 185, 727, 755, 950, 951
PspPPI RGGWCCY 1 cut(s) 176
PspXI VCTCGAGB 1 cut(s) 1111
PstNI CAGNNNCTG 1 cut(s) 876
PsuI RGATCY 1 cut(s) 790
SacI GAGCTC 1 cut(s) 480
SaqAI TTAA 1 cut(s) 912
SatI GCNGC 3 cut(s) 5, 57, 702
Sau3AI GATC 1 cut(s) 790
Sau96I GGNCC 7 cut(s) 176, 184, 185, 727, 755, 950, 951
SchI GAGTC 1 cut(s) 595
ScrFI CCNGG 3 cut(s) 121, 139, 731
SduI GDGCHC 5 cut(s) 47, 188, 256, 480, 954
SfaNI GCATC 1 cut(s) 739
SfoI GGCGCC 1 cut(s) 323
Sfr274I CTCGAG 1 cut(s) 1111
SgrAI CRCCGGYG 1 cut(s) 217
SinI GGWCC 3 cut(s) 176, 727, 755
SlaI CTCGAG 1 cut(s) 1111
SmlI CTYRAG 1 cut(s) 1111
SmoI CTYRAG 1 cut(s) 1111
SphI GCATGC 1 cut(s) 351
Sse9I AATT 6 cut(s) 408, 773, 819, 884, 958, 1089
SseBI AGGCCT 1 cut(s) 1126
SsiI CCGC 1 cut(s) 373
SspDI GGCGCC 1 cut(s) 321
SspMI CTAG 3 cut(s) 539, 746, 816
SstI GAGCTC 1 cut(s) 480
StuI AGGCCT 1 cut(s) 1126
StyD4I CCNGG 3 cut(s) 119, 137, 729
StyI CCWWGG 2 cut(s) 180, 1095
TaaI ACNGT 4 cut(s) 167, 508, 900, 1049
TaiI ACGT 4 cut(s) 320, 573, 709, 939
TaqI TCGA 2 cut(s) 132, 1112
TasI AATT 6 cut(s) 408, 773, 819, 884, 958, 1089
TfiI GAWTC 1 cut(s) 535
Tru1I TTAA 1 cut(s) 912
Tru9I TTAA 1 cut(s) 912
TscAI CASTG 5 cut(s) 277, 729, 866, 877, 1054
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 3 cut(s) 4, 56, 701
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 4 cut(s) 386, 446, 843, 990
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 5 cut(s) 277, 729, 866, 877, 1054
VpaK11BI GGWCC 3 cut(s) 176, 727, 755
XapI RAATTY 1 cut(s) 408
XceI RCATGY 4 cut(s) 28, 351, 473, 845
XcmI CCANNNNNNNNNTGG 1 cut(s) 1093
XhoI CTCGAG 1 cut(s) 1111
XspI CTAG 3 cut(s) 539, 746, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.