Rmu_co8451771.1_g000001

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8451771.1
OG0014019
Physical Location & Seq
Reverse (-)
1 .. 1609
1609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8451771.1_g000001.1.cds

Sequence Viewer

Length: 729 bp
atgcagcgtctcaaactccaccacatgctctctcctccattgtgctcctcccatgctcctttgttatcatcatgcctcagaaccaagtctctttcctcttctatgcaaccctcaccctggtctggtctcgaaacctggaggaatagccccctgaatgagaaccgttgctggggacccaagggcccccaaacgattgacaacgccgacactccaccggtgtcgtcggcttcctctcttgcagagcttggtgctctcgttctctccaccagtgaccccctcgccaagtccaacctttcccacatcgcttactccacgtggcgccaacacaaccttccacttggtgcatgccaacctcctcctcgtcctgcccgccctctgaaaccccaactggttcatccgaaagaaattccagctcccaagaactcgggtttgcctctcaatgcgtatatgcttcataatcttgcacatgttgagctcaatgcgattgatttagcatgggatactgttgtccgtttctctccttttagtgagattctaggcgaagggtttttcgctgactttgctcacgtcgccgacgatgagagtcgccattttgcttggtgttctcagaggcttgccgaacttggtttcaagtatggagatatgcctgctcataatctgctctggagggagtgtgagaaatcatctgacaatgttgctgcacgtttggctgtcataccactggtccag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

243

Amino Acids

26.8

Weight (kDa)

7.17

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014019)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06240
fragaria_vesca FvH4_6g27080 FvH4_6g27080
malus_domestica MD09G1240300.v1.1
prunus_persica Prupe.3G124300_v2.0.a1
pyrus_communis pycom09g15890
rosa_chinensis RchiOBHm_Chr2g0129041
rosa_laevigata RLG00000019046
rosa_multiflora Rmu_co8451771.1_g000001
rosa_roxburghii Rroxscaffold_2G00114940
rosa_rugosa Rorug02G0283600 Rorug02G0283700
rosa_samantha Rh2AG336100 Rh2BG344100 Rh2CG323000 Rh2DG360700
rosa_wichuraiana Rw2G027250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 318
AciI CCGC 1 cut(s) 370
AcsI RAATTY 1 cut(s) 405
AcvI CACGTG 1 cut(s) 315
AcyI GRCGYC 1 cut(s) 319
AdeI CACNNNGTG 1 cut(s) 341
AfiI CCNNNNNNNGG 3 cut(s) 117, 122, 169
AflIII ACRYGT 1 cut(s) 466
AgeI ACCGGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 631
AjiI CACGTC 1 cut(s) 568
AjnI CCWGG 2 cut(s) 116, 134
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AluBI AGCT 3 cut(s) 244, 413, 475
AluI AGCT 3 cut(s) 244, 413, 475
Alw21I GWGCWC 3 cut(s) 47, 253, 477
Alw26I GTCTC 3 cut(s) 14, 93, 131
Ama87I CYCGRG 1 cut(s) 424
AoxI GGCC 1 cut(s) 181
ApaI GGGCCC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 4, 698
ApoI RAATTY 1 cut(s) 405
AsiGI ACCGGT 1 cut(s) 214
AspLEI GCGC 1 cut(s) 321
AspS9I GGNCC 4 cut(s) 173, 181, 182, 724
AsuHPI GGTGA 1 cut(s) 105
AvaI CYCGRG 1 cut(s) 424
AvaII GGWCC 2 cut(s) 173, 724
BaeGI GKGCMC 1 cut(s) 185
BaeI ACNNNNGTAYC 2 cut(s) 492, 525
BanI GGYRCC 1 cut(s) 318
BanII GRGCYC 2 cut(s) 185, 477
BbrPI CACGTG 1 cut(s) 315
Bbv12I GWGCWC 3 cut(s) 47, 253, 477
BbvI GCAGC 2 cut(s) 16, 685
BciT130I CCWGG 2 cut(s) 118, 136
BciVI GTATCC 1 cut(s) 493
BcoDI GTCTC 3 cut(s) 14, 93, 131
BfaI CTAG 1 cut(s) 536
BfoI RGCGCY 1 cut(s) 322
BfuI GTATCC 1 cut(s) 493
BisI GCNGC 2 cut(s) 5, 699
BlsI GCNGC 2 cut(s) 6, 700
Bme1390I CCNGG 2 cut(s) 118, 136
Bme18I GGWCC 2 cut(s) 173, 724
BmeT110I CYCGRG 1 cut(s) 424
BmgBI CACGTC 1 cut(s) 568
BmgT120I GGNCC 4 cut(s) 173, 181, 182, 724
BmiI GGNNCC 5 cut(s) 174, 175, 183, 184, 320
BmrFI CCNGG 2 cut(s) 118, 136
BpmI CTGGAG 2 cut(s) 157, 685
BsaAI YACGTR 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 319
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 2 cut(s) 116, 177
BsaWI WCCGGW 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 658, 688
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 122, 169
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 3 cut(s) 267, 393, 726
BseBI CCWGG 2 cut(s) 118, 136
BseDI CCNNGG 2 cut(s) 116, 177
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 3 cut(s) 117, 122, 169
BseMII CTCAG 2 cut(s) 91, 620
BseNI ACTGG 3 cut(s) 267, 393, 726
BseRI GAGGAG 4 cut(s) 24, 37, 345, 348
BseSI GKGCMC 1 cut(s) 185
BseXI GCAGC 2 cut(s) 16, 685
BseYI CCCAGC 1 cut(s) 168
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 318
BshTI ACCGGT 1 cut(s) 214
BsiHKAI GWGCWC 3 cut(s) 47, 253, 477
BsiHKCI CYCGRG 1 cut(s) 424
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 186
BslI CCNNNNNNNGG 3 cut(s) 117, 122, 169
BsmAI GTCTC 3 cut(s) 14, 93, 131
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 1 cut(s) 183
Bso31I GGTCTC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 424
Bsp120I GGGCCC 1 cut(s) 181
Bsp1286I GDGCHC 4 cut(s) 47, 185, 253, 477
BspACI CCGC 1 cut(s) 370
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 2 cut(s) 90, 619
BspLI GGNNCC 5 cut(s) 174, 175, 183, 184, 320
BspT107I GGYRCC 1 cut(s) 318
BspTNI GGTCTC 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 3 cut(s) 267, 393, 726
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 2 cut(s) 116, 177
BssNI GRCGYC 1 cut(s) 319
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 2 cut(s) 118, 136
Bst4CI ACNGT 2 cut(s) 164, 505
Bst6I CTCTTC 1 cut(s) 103
BstACI GRCGYC 1 cut(s) 319
BstBAI YACGTR 1 cut(s) 315
BstC8I GCNNGC 4 cut(s) 346, 370, 615, 648
BstDEI CTNAG 2 cut(s) 77, 606
BstF5I GGATG 1 cut(s) 394
BstH2I RGCGCY 1 cut(s) 322
BstHHI GCGC 1 cut(s) 321
BstMAI GTCTC 3 cut(s) 14, 93, 131
BstMWI GCNNNNNNNGC 3 cut(s) 560, 569, 707
BstNI CCWGG 2 cut(s) 118, 136
BstNSI RCATGY 3 cut(s) 28, 348, 470
BstSCI CCNGG 2 cut(s) 116, 134
BstSLI GKGCMC 1 cut(s) 185
BstV1I GCAGC 2 cut(s) 16, 685
BsuI GTATCC 1 cut(s) 493
BsuRI GGCC 1 cut(s) 183
BtgZI GCGATG 1 cut(s) 286
BtrI CACGTC 1 cut(s) 568
BtsCI GGATG 1 cut(s) 394
BtsIMutI CAGTG 2 cut(s) 274, 719
Cac8I GCNNGC 4 cut(s) 346, 370, 615, 648
CfoI GCGC 1 cut(s) 321
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 4 cut(s) 173, 181, 182, 724
CspAI ACCGGT 1 cut(s) 214
CviAII CATG 6 cut(s) 25, 53, 72, 345, 467, 495
CviJI RGCY 8 cut(s) 147, 183, 227, 244, 413, 475, 613, 710
CviKI_1 RGCY 8 cut(s) 147, 183, 227, 244, 413, 475, 613, 710
DdeI CTNAG 2 cut(s) 77, 606
DinI GGCGCC 1 cut(s) 320
DraIII CACNNNGTG 1 cut(s) 341
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 475
Eco130I CCWWGG 1 cut(s) 177
Eco24I GRGCYC 2 cut(s) 185, 477
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 173, 724
Eco53kI GAGCTC 1 cut(s) 475
Eco72I CACGTG 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 424
EcoICRI GAGCTC 1 cut(s) 475
EcoO109I RGGNCCY 3 cut(s) 173, 181, 182
EcoRII CCWGG 2 cut(s) 116, 134
EcoT14I CCWWGG 1 cut(s) 177
EcoT38I GRGCYC 2 cut(s) 185, 477
EgeI GGCGCC 1 cut(s) 320
EheI GGCGCC 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 6 cut(s) 28, 56, 75, 348, 470, 498
FaqI GGGAC 1 cut(s) 186
FatI CATG 6 cut(s) 24, 52, 71, 344, 466, 494
FauI CCCGC 1 cut(s) 377
Fnu4HI GCNGC 2 cut(s) 5, 699
FokI GGATG 1 cut(s) 381
FriOI GRGCYC 2 cut(s) 185, 477
Fsp4HI GCNGC 2 cut(s) 5, 699
FspBI CTAG 1 cut(s) 536
GlaI GCGC 1 cut(s) 320
GluI GCNGC 2 cut(s) 5, 699
GsaI CCCAGC 1 cut(s) 172
GsuI CTGGAG 2 cut(s) 157, 685
HaeII RGCGCY 1 cut(s) 322
HaeIII GGCC 1 cut(s) 183
HapII CCGG 1 cut(s) 215
HhaI GCGC 1 cut(s) 321
Hin1I GRCGYC 1 cut(s) 319
Hin1II CATG 6 cut(s) 28, 56, 75, 348, 470, 498
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HinfI GANTC 2 cut(s) 532, 583
HpaII CCGG 1 cut(s) 215
HphI GGTGA 1 cut(s) 105
Hpy188I TCNGA 5 cut(s) 80, 378, 399, 609, 688
Hpy188III TCNNGA 2 cut(s) 128, 664
Hpy99I CGWCG 3 cut(s) 226, 572, 578
HpyAV CCTTC 2 cut(s) 341, 536
HpyCH4III ACNGT 2 cut(s) 164, 505
HpyCH4IV ACGT 3 cut(s) 314, 567, 703
HpyCH4V TGCA 6 cut(s) 4, 106, 239, 344, 464, 701
HpyF10VI GCNNNNNNNGC 3 cut(s) 560, 569, 707
HpyF3I CTNAG 2 cut(s) 77, 606
HpySE526I ACGT 3 cut(s) 314, 567, 703
Hsp92I GRCGYC 1 cut(s) 319
Hsp92II CATG 6 cut(s) 28, 56, 75, 348, 470, 498
HspAI GCGC 1 cut(s) 319
KasI GGCGCC 1 cut(s) 318
KflI GGGWCCC 1 cut(s) 173
LmnI GCTCC 3 cut(s) 50, 61, 418
Lsp1109I GCAGC 2 cut(s) 16, 685
MaeI CTAG 1 cut(s) 536
MaeII ACGT 3 cut(s) 314, 567, 703
MaeIII GTNAC 1 cut(s) 269
MboII GAAGA 1 cut(s) 90
MhlI GDGCHC 4 cut(s) 47, 185, 253, 477
MluCI AATT 1 cut(s) 405
Mly113I GGCGCC 1 cut(s) 319
MlyI GAGTC 1 cut(s) 592
MmeI TCCRAC 1 cut(s) 312
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 2 cut(s) 118, 136
MvaI CCWGG 2 cut(s) 118, 136
MwoI GCNNNNNNNGC 3 cut(s) 560, 569, 707
NarI GGCGCC 1 cut(s) 319
NlaIII CATG 6 cut(s) 28, 56, 75, 348, 470, 498
NlaIV GGNNCC 5 cut(s) 174, 175, 183, 184, 320
NmuCI GTSAC 1 cut(s) 269
NspI RCATGY 3 cut(s) 28, 348, 470
PaeI GCATGC 1 cut(s) 348
PciI ACATGT 1 cut(s) 466
PcsI WCGNNNNNNNCGW 1 cut(s) 573
PfeI GAWTC 1 cut(s) 532
PinAI ACCGGT 1 cut(s) 214
PkrI GCNGC 2 cut(s) 6, 700
PleI GAGTC 1 cut(s) 591
PluTI GGCGCC 1 cut(s) 322
PmaCI CACGTG 1 cut(s) 315
PmlI CACGTG 1 cut(s) 315
PpsI GAGTC 1 cut(s) 591
Ppu21I YACGTR 1 cut(s) 315
PpuMI RGGWCCY 1 cut(s) 173
PscI ACATGT 1 cut(s) 466
Psp124BI GAGCTC 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 116, 134
PspCI CACGTG 1 cut(s) 315
PspFI CCCAGC 1 cut(s) 168
PspGI CCWGG 2 cut(s) 116, 134
PspN4I GGNNCC 5 cut(s) 174, 175, 183, 184, 320
PspOMI GGGCCC 1 cut(s) 181
PspPI GGNCC 4 cut(s) 173, 181, 182, 724
PspPPI RGGWCCY 1 cut(s) 173
SacI GAGCTC 1 cut(s) 477
SatI GCNGC 2 cut(s) 5, 699
Sau96I GGNCC 4 cut(s) 173, 181, 182, 724
SchI GAGTC 1 cut(s) 592
ScrFI CCNGG 2 cut(s) 118, 136
SduI GDGCHC 4 cut(s) 47, 185, 253, 477
SfoI GGCGCC 1 cut(s) 320
SgrAI CRCCGGYG 1 cut(s) 214
SinI GGWCC 2 cut(s) 173, 724
SphI GCATGC 1 cut(s) 348
Sse9I AATT 1 cut(s) 405
SsiI CCGC 1 cut(s) 370
SspDI GGCGCC 1 cut(s) 318
SspMI CTAG 1 cut(s) 536
SstI GAGCTC 1 cut(s) 477
StyD4I CCNGG 2 cut(s) 116, 134
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 164, 505
TaiI ACGT 3 cut(s) 317, 570, 706
TaqI TCGA 1 cut(s) 129
TasI AATT 1 cut(s) 405
TfiI GAWTC 1 cut(s) 532
TscAI CASTG 2 cut(s) 274, 726
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 2 cut(s) 4, 698
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 2 cut(s) 383, 443
TspGWI ACGGA 1 cut(s) 500
TspRI CASTG 2 cut(s) 274, 726
VpaK11BI GGWCC 2 cut(s) 173, 724
XapI RAATTY 1 cut(s) 405
XceI RCATGY 3 cut(s) 28, 348, 470
XspI CTAG 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.