Rroxscaffold_2G00114940

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014019
Physical Location & Seq
Reverse (-)
41032866 .. 41041848
8983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00114940.1

Sequence Viewer

Length: 1197 bp
ATGCTTTTCCATGTTGACATGACAATATGGGTAACTTCTATAGAAAATCTGGTGTCCGATAACCATTATTCAAGCCTAGGAACTACCAAAGCTGGTGTCAATGTTATCAGTCTCTTGAGCAAAATTGTCAACCCTTTTCCTGGTCTTATCTATTGGTCTGCTTTTGGTCTTTACTTGGATTTGAATCAACTTTGGTTTGCTGCTACTCCATCTAGCCCCCTCAATGAGAACCGTTGCTGGGGACCCAAGGGCCCCCAAACGATTGACAACGCCGACACTCCAATGGTGTCGTCTGCTTCCTCTCTTGCAGAGCTTGGTGCTCTCGTTCTCTCCACCAGTGACCCCCTTGCTAAGTCCAACCTTTCCCACATCGCTTACTCCACGTGGCGCCAACACAATCTTCCACTTGGTACATGCCAACCTCCTCCTCGTCCTGCCCGCCCTCTGAAACCCCAACTGGTTCATCCGAAAGAAATTCCAGCTCCCAAGAACTCGGGTTTGCCTCTCAATGCGTATATGCTTCATAATCTTGCACATGTTGAGCTCAATGCGATTGATTTAGCATGGGATACTGTTGTCCGTTTCTCTCCTTTTAGTGAGATTCTAGGGGAAGGGTTTTTCGCTGACTTTGCTCACGTTGCCGACGATGAGAGTCGCCATTTTGCTTGGTGTTCTCAGAGGCTTGCCGAACTTGGTTTCAAGTATGGAGATATGCCTGCTCATAATCTGCTCTGGAGGGTGTGTGAGAAATCATCTGACAATGTTGCTGCACGTTTGGCTGTCATACCACTGGTCCAGGAGGCCAGAGGACTAGATGCTGGACCACGACTTGTGCAAAAATTGGTTGGCTTCGGAGATCTCAGGACATCTGAAATCGTTGCTAGAATTGCTAAGGAAGAAGTGGCACATGTAGCTGTTGGTGTCCACTGGTTTGTCAGTGTCTGTCAGAAATTAGGTTGCGCACCGTCTTCTGCATTTAAAGACTTGTTAGAAGACTATAACGTTGAGTTGAAAGGGCCCTTCAATTATTCAGCTCGTGATGAAGCTGGCATTCCTCGTGATTGGTATGATTTATCTACAAATAACAAGGACAAGAACAAGAAAAGTGCTAACAGTGAGAAGCTTTCTGAGGTGTATGAGAGGCTTGCTTCCATAATTTCCATGGAGAGTGAGAACTCGAGTTTGAACAGGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

398

Amino Acids

43.96

Weight (kDa)

5.96

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF455 PF04305 112 - 357 3.7e-85 Protein of unknown function (DUF455)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014019)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06240
fragaria_vesca FvH4_6g27080 FvH4_6g27080
malus_domestica MD09G1240300.v1.1
prunus_persica Prupe.3G124300_v2.0.a1
pyrus_communis pycom09g15890
rosa_chinensis RchiOBHm_Chr2g0129041
rosa_laevigata RLG00000019046
rosa_multiflora Rmu_co8451771.1_g000001
rosa_roxburghii Rroxscaffold_2G00114940
rosa_rugosa Rorug02G0283600 Rorug02G0283700
rosa_samantha Rh2AG336100 Rh2BG344100 Rh2CG323000 Rh2DG360700
rosa_wichuraiana Rw2G027250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 961
AccB1I GGYRCC 1 cut(s) 387
AciI CCGC 1 cut(s) 439
AclI AACGTT 1 cut(s) 1002
AcsI RAATTY 1 cut(s) 474
AcvI CACGTG 1 cut(s) 384
AcyI GRCGYC 1 cut(s) 388
AfaI GTAC 1 cut(s) 412
AfiI CCNNNNNNNGG 2 cut(s) 140, 238
AflIII ACRYGT 2 cut(s) 535, 907
AgsI TTSAA 6 cut(s) 72, 184, 700, 1012, 1024, 1186
AjnI CCWGG 2 cut(s) 139, 795
AjuI GAANNNNNNNTTGG 2 cut(s) 384, 416
AluBI AGCT 8 cut(s) 92, 313, 482, 544, 914, 1034, 1046, 1123
AluI AGCT 8 cut(s) 92, 313, 482, 544, 914, 1034, 1046, 1123
Alw21I GWGCWC 2 cut(s) 322, 546
Alw26I GTCTC 1 cut(s) 116
AlwNI CAGNNNCTG 1 cut(s) 942
Ama87I CYCGRG 2 cut(s) 493, 1177
AoxI GGCC 4 cut(s) 250, 801, 1016, 1190
ApaI GGGCCC 2 cut(s) 254, 1020
ApeKI GCWGC 2 cut(s) 200, 767
ApoI RAATTY 1 cut(s) 474
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
AspA2I CCTAGG 1 cut(s) 76
AspLEI GCGC 2 cut(s) 390, 962
AspS9I GGNCC 7 cut(s) 242, 250, 251, 793, 821, 1016, 1017
AvaI CYCGRG 2 cut(s) 493, 1177
AvaII GGWCC 3 cut(s) 242, 793, 821
AvrII CCTAGG 1 cut(s) 76
BaeGI GKGCMC 2 cut(s) 254, 1020
BaeI ACNNNNGTAYC 2 cut(s) 561, 594
BanI GGYRCC 1 cut(s) 387
BanII GRGCYC 3 cut(s) 254, 546, 1020
BauI CACGAG 2 cut(s) 1035, 1056
BbrPI CACGTG 1 cut(s) 384
BbsI GAAGAC 2 cut(s) 960, 999
Bbv12I GWGCWC 2 cut(s) 322, 546
BbvI GCAGC 2 cut(s) 187, 754
BccI CCATC 1 cut(s) 217
BciT130I CCWGG 2 cut(s) 141, 797
BciVI GTATCC 1 cut(s) 562
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 5 cut(s) 77, 213, 605, 812, 882
BfmI CTRYAG 1 cut(s) 39
BfoI RGCGCY 1 cut(s) 391
BfuI GTATCC 1 cut(s) 562
BglII AGATCT 1 cut(s) 856
BisI GCNGC 2 cut(s) 201, 768
BlnI CCTAGG 1 cut(s) 76
BlsI GCNGC 2 cut(s) 202, 769
Bme1390I CCNGG 2 cut(s) 141, 797
Bme18I GGWCC 3 cut(s) 242, 793, 821
BmeT110I CYCGRG 2 cut(s) 493, 1177
BmgT120I GGNCC 7 cut(s) 242, 250, 251, 793, 821, 1016, 1017
BmiI GGNNCC 6 cut(s) 243, 244, 252, 253, 389, 1018
BmrFI CCNGG 2 cut(s) 141, 797
BmsI GCATC 1 cut(s) 805
BpiI GAAGAC 2 cut(s) 960, 999
BpmI CTGGAG 1 cut(s) 754
Bpu10I CCTNAGC 1 cut(s) 891
BpuEI CTTGAG 1 cut(s) 136
BsaAI YACGTR 1 cut(s) 384
BsaBI GATNNNNATC 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 388
BsaJI CCNNGG 3 cut(s) 76, 246, 1161
BsaXI ACNNNNNCTCC 2 cut(s) 727, 757
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 238
Bse1I ACTGG 4 cut(s) 336, 462, 795, 932
Bse8I GATNNNNATC 1 cut(s) 183
BseBI CCWGG 2 cut(s) 141, 797
BseDI CCNNGG 3 cut(s) 76, 246, 1161
BseGI GGATG 1 cut(s) 463
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 2 cut(s) 140, 238
BseMII CTCAG 3 cut(s) 689, 874, 1119
BseNI ACTGG 4 cut(s) 336, 462, 795, 932
BseRI GAGGAG 2 cut(s) 414, 417
BseSI GKGCMC 2 cut(s) 254, 1020
BseXI GCAGC 2 cut(s) 187, 754
BseYI CCCAGC 1 cut(s) 237
BsgI GTGCAG 1 cut(s) 753
BshFI GGCC 4 cut(s) 252, 803, 1018, 1192
BshNI GGYRCC 1 cut(s) 387
BsiHKAI GWGCWC 2 cut(s) 322, 546
BsiHKCI CYCGRG 2 cut(s) 493, 1177
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 2 cut(s) 140, 238
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 1050
BsnI GGCC 4 cut(s) 252, 803, 1018, 1192
BsoBI CYCGRG 2 cut(s) 493, 1177
Bsp120I GGGCCC 2 cut(s) 250, 1016
Bsp1286I GDGCHC 4 cut(s) 254, 322, 546, 1020
Bsp143I GATC 1 cut(s) 856
Bsp19I CCATGG 1 cut(s) 1161
BspACI CCGC 1 cut(s) 439
BspANI GGCC 4 cut(s) 252, 803, 1018, 1192
BspCNI CTCAG 3 cut(s) 688, 873, 1120
BspLI GGNNCC 6 cut(s) 243, 244, 252, 253, 389, 1018
BspT107I GGYRCC 1 cut(s) 387
BsrI ACTGG 4 cut(s) 336, 462, 795, 932
BssECI CCNNGG 3 cut(s) 76, 246, 1161
BssMI GATC 1 cut(s) 856
BssNI GRCGYC 1 cut(s) 388
BssSI CACGAG 2 cut(s) 1035, 1056
BssT1I CCWWGG 3 cut(s) 76, 246, 1161
Bst2BI CACGAG 2 cut(s) 1035, 1056
Bst2UI CCWGG 2 cut(s) 141, 797
Bst4CI ACNGT 4 cut(s) 233, 574, 966, 1115
BstACI GRCGYC 1 cut(s) 388
BstBAI YACGTR 1 cut(s) 384
BstC8I GCNNGC 5 cut(s) 439, 684, 717, 1048, 1146
BstDEI CTNAG 6 cut(s) 351, 675, 860, 891, 1128, 1194
BstDSI CCRYGG 1 cut(s) 1161
BstF5I GGATG 1 cut(s) 463
BstH2I RGCGCY 1 cut(s) 391
BstHHI GCGC 2 cut(s) 390, 962
BstKTI GATC 1 cut(s) 859
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 1 cut(s) 856
BstMWI GCNNNNNNNGC 5 cut(s) 629, 638, 776, 887, 911
BstNI CCWGG 2 cut(s) 141, 797
BstNSI RCATGY 3 cut(s) 417, 539, 911
BstSCI CCNGG 2 cut(s) 139, 795
BstSFI CTRYAG 1 cut(s) 39
BstSLI GKGCMC 2 cut(s) 254, 1020
BstV1I GCAGC 2 cut(s) 187, 754
BstV2I GAAGAC 2 cut(s) 960, 999
BstX2I RGATCY 1 cut(s) 856
BstYI RGATCY 1 cut(s) 856
BsuI GTATCC 1 cut(s) 562
BsuRI GGCC 4 cut(s) 252, 803, 1018, 1192
BtgI CCRYGG 1 cut(s) 1161
BtgZI GCGATG 1 cut(s) 355
BtsCI GGATG 1 cut(s) 463
BtsIMutI CAGTG 5 cut(s) 343, 788, 925, 943, 1120
Cac8I GCNNGC 5 cut(s) 439, 684, 717, 1048, 1146
CaiI CAGNNNCTG 1 cut(s) 942
CfoI GCGC 2 cut(s) 390, 962
Cfr13I GGNCC 7 cut(s) 242, 250, 251, 793, 821, 1016, 1017
Csp6I GTAC 1 cut(s) 411
CviAII CATG 7 cut(s) 11, 19, 414, 536, 564, 908, 1162
CviQI GTAC 1 cut(s) 411
DdeI CTNAG 6 cut(s) 351, 675, 860, 891, 1128, 1194
DinI GGCGCC 1 cut(s) 389
DpnI GATC 1 cut(s) 858
DpnII GATC 1 cut(s) 856
DraI TTTAAA 1 cut(s) 979
Ecl136II GAGCTC 1 cut(s) 544
Eco130I CCWWGG 3 cut(s) 76, 246, 1161
Eco147I AGGCCT 1 cut(s) 1192
Eco24I GRGCYC 3 cut(s) 254, 546, 1020
Eco47I GGWCC 3 cut(s) 242, 793, 821
Eco53kI GAGCTC 1 cut(s) 544
Eco72I CACGTG 1 cut(s) 384
Eco88I CYCGRG 2 cut(s) 493, 1177
EcoICRI GAGCTC 1 cut(s) 544
EcoO109I RGGNCCY 5 cut(s) 242, 250, 251, 1016, 1017
EcoRII CCWGG 2 cut(s) 139, 795
EcoT14I CCWWGG 3 cut(s) 76, 246, 1161
EcoT38I GRGCYC 3 cut(s) 254, 546, 1020
EgeI GGCGCC 1 cut(s) 389
EheI GGCGCC 1 cut(s) 389
ErhI CCWWGG 3 cut(s) 76, 246, 1161
FaeI CATG 7 cut(s) 14, 22, 417, 539, 567, 911, 1165
FaqI GGGAC 1 cut(s) 255
FatI CATG 7 cut(s) 10, 18, 413, 535, 563, 907, 1161
FauI CCCGC 1 cut(s) 446
Fnu4HI GCNGC 2 cut(s) 201, 768
FokI GGATG 1 cut(s) 450
FriOI GRGCYC 3 cut(s) 254, 546, 1020
Fsp4HI GCNGC 2 cut(s) 201, 768
FspBI CTAG 5 cut(s) 77, 213, 605, 812, 882
FspI TGCGCA 1 cut(s) 961
GlaI GCGC 2 cut(s) 389, 961
GluI GCNGC 2 cut(s) 201, 768
GsaI CCCAGC 1 cut(s) 241
GsuI CTGGAG 1 cut(s) 754
HaeII RGCGCY 1 cut(s) 391
HaeIII GGCC 4 cut(s) 252, 803, 1018, 1192
HhaI GCGC 2 cut(s) 390, 962
Hin1I GRCGYC 1 cut(s) 388
Hin1II CATG 7 cut(s) 14, 22, 417, 539, 567, 911, 1165
Hin6I GCGC 2 cut(s) 388, 960
HinP1I GCGC 2 cut(s) 388, 960
HincII GTYRAC 2 cut(s) 16, 130
HindII GTYRAC 2 cut(s) 16, 130
HindIII AAGCTT 1 cut(s) 1121
HinfI GANTC 3 cut(s) 184, 601, 652
Hpy166II GTNNAC 3 cut(s) 16, 130, 925
Hpy188I TCNGA 9 cut(s) 58, 447, 468, 678, 757, 854, 871, 948, 1129
Hpy188III TCNNGA 5 cut(s) 115, 733, 862, 1037, 1058
Hpy8I GTNNAC 3 cut(s) 16, 130, 925
Hpy99I CGWCG 1 cut(s) 647
HpyAV CCTTC 2 cut(s) 605, 1030
HpyCH4III ACNGT 4 cut(s) 233, 574, 966, 1115
HpyCH4IV ACGT 4 cut(s) 383, 636, 772, 1002
HpyCH4V TGCA 5 cut(s) 308, 533, 770, 835, 974
HpyF10VI GCNNNNNNNGC 5 cut(s) 629, 638, 776, 887, 911
HpyF3I CTNAG 6 cut(s) 351, 675, 860, 891, 1128, 1194
HpySE526I ACGT 4 cut(s) 383, 636, 772, 1002
Hsp92I GRCGYC 1 cut(s) 388
Hsp92II CATG 7 cut(s) 14, 22, 417, 539, 567, 911, 1165
HspAI GCGC 2 cut(s) 388, 960
KasI GGCGCC 1 cut(s) 387
KflI GGGWCCC 1 cut(s) 242
Kzo9I GATC 1 cut(s) 856
LmnI GCTCC 1 cut(s) 487
Lsp1109I GCAGC 2 cut(s) 187, 754
LweI GCATC 1 cut(s) 805
MaeI CTAG 5 cut(s) 77, 213, 605, 812, 882
MaeII ACGT 4 cut(s) 383, 636, 772, 1002
MaeIII GTNAC 2 cut(s) 31, 338
MalI GATC 1 cut(s) 858
MboI GATC 1 cut(s) 856
MboII GAAGA 4 cut(s) 392, 908, 960, 1004
MflI RGATCY 1 cut(s) 856
MhlI GDGCHC 4 cut(s) 254, 322, 546, 1020
MluCI AATT 7 cut(s) 123, 474, 839, 885, 950, 1024, 1155
Mly113I GGCGCC 1 cut(s) 388
MlyI GAGTC 1 cut(s) 661
MmeI TCCRAC 1 cut(s) 381
MseI TTAA 1 cut(s) 978
MslI CAYNNNNRTG 1 cut(s) 281
MspR9I CCNGG 2 cut(s) 141, 797
Mva1269I GAATGC 1 cut(s) 1050
MvaI CCWGG 2 cut(s) 141, 797
MwoI GCNNNNNNNGC 5 cut(s) 629, 638, 776, 887, 911
NarI GGCGCC 1 cut(s) 388
NcoI CCATGG 1 cut(s) 1161
NdeII GATC 1 cut(s) 856
NlaIII CATG 7 cut(s) 14, 22, 417, 539, 567, 911, 1165
NlaIV GGNNCC 6 cut(s) 243, 244, 252, 253, 389, 1018
NmuCI GTSAC 1 cut(s) 338
NsbI TGCGCA 1 cut(s) 961
NspI RCATGY 3 cut(s) 417, 539, 911
PaeR7I CTCGAG 1 cut(s) 1177
PceI AGGCCT 1 cut(s) 1192
PciI ACATGT 2 cut(s) 535, 907
PcsI WCGNNNNNNNCGW 1 cut(s) 642
PctI GAATGC 1 cut(s) 1050
PfeI GAWTC 2 cut(s) 184, 601
PfoI TCCNGGA 1 cut(s) 795
PkrI GCNGC 2 cut(s) 202, 769
PleI GAGTC 1 cut(s) 660
PluTI GGCGCC 1 cut(s) 391
PmaCI CACGTG 1 cut(s) 384
PmlI CACGTG 1 cut(s) 384
PpsI GAGTC 1 cut(s) 660
Ppu21I YACGTR 1 cut(s) 384
PpuMI RGGWCCY 1 cut(s) 242
PscI ACATGT 2 cut(s) 535, 907
Psp124BI GAGCTC 1 cut(s) 546
Psp1406I AACGTT 1 cut(s) 1002
Psp5II RGGWCCY 1 cut(s) 242
Psp6I CCWGG 2 cut(s) 139, 795
PspCI CACGTG 1 cut(s) 384
PspFI CCCAGC 1 cut(s) 237
PspGI CCWGG 2 cut(s) 139, 795
PspN4I GGNNCC 6 cut(s) 243, 244, 252, 253, 389, 1018
PspOMI GGGCCC 2 cut(s) 250, 1016
PspPI GGNCC 7 cut(s) 242, 250, 251, 793, 821, 1016, 1017
PspPPI RGGWCCY 1 cut(s) 242
PspXI VCTCGAGB 1 cut(s) 1177
PstNI CAGNNNCTG 1 cut(s) 942
PsuI RGATCY 1 cut(s) 856
RsaI GTAC 1 cut(s) 412
RsaNI GTAC 1 cut(s) 411
RseI CAYNNNNRTG 1 cut(s) 281
SacI GAGCTC 1 cut(s) 546
SaqAI TTAA 1 cut(s) 978
SatI GCNGC 2 cut(s) 201, 768
Sau3AI GATC 1 cut(s) 856
Sau96I GGNCC 7 cut(s) 242, 250, 251, 793, 821, 1016, 1017
SchI GAGTC 1 cut(s) 661
ScrFI CCNGG 2 cut(s) 141, 797
SduI GDGCHC 4 cut(s) 254, 322, 546, 1020
SfaNI GCATC 1 cut(s) 805
SfcI CTRYAG 1 cut(s) 39
SfoI GGCGCC 1 cut(s) 389
Sfr274I CTCGAG 1 cut(s) 1177
SinI GGWCC 3 cut(s) 242, 793, 821
SlaI CTCGAG 1 cut(s) 1177
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 2 cut(s) 115, 1177
SmoI CTYRAG 2 cut(s) 115, 1177
Sse9I AATT 7 cut(s) 123, 474, 839, 885, 950, 1024, 1155
SseBI AGGCCT 1 cut(s) 1192
SsiI CCGC 1 cut(s) 439
SspDI GGCGCC 1 cut(s) 387
SspMI CTAG 5 cut(s) 77, 213, 605, 812, 882
SstI GAGCTC 1 cut(s) 546
StuI AGGCCT 1 cut(s) 1192
StyD4I CCNGG 2 cut(s) 139, 795
StyI CCWWGG 3 cut(s) 76, 246, 1161
TaaI ACNGT 4 cut(s) 233, 574, 966, 1115
TaiI ACGT 4 cut(s) 386, 639, 775, 1005
TaqI TCGA 1 cut(s) 1178
TasI AATT 7 cut(s) 123, 474, 839, 885, 950, 1024, 1155
TfiI GAWTC 2 cut(s) 184, 601
Tru1I TTAA 1 cut(s) 978
Tru9I TTAA 1 cut(s) 978
TscAI CASTG 5 cut(s) 343, 795, 932, 943, 1120
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 2 cut(s) 200, 767
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 3 cut(s) 452, 512, 1056
TspGWI ACGGA 1 cut(s) 569
TspRI CASTG 5 cut(s) 343, 795, 932, 943, 1120
VpaK11BI GGWCC 3 cut(s) 242, 793, 821
XapI RAATTY 1 cut(s) 474
XceI RCATGY 3 cut(s) 417, 539, 911
XcmI CCANNNNNNNNNTGG 1 cut(s) 1159
XhoI CTCGAG 1 cut(s) 1177
XmaJI CCTAGG 1 cut(s) 76
XspI CTAG 5 cut(s) 77, 213, 605, 812, 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.