Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012364

Physical Location & Seq

Genomic Coordinates Forward (+)

2001382 .. 2002802

Gene Structure 1421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCGGAAGAGAGGAGCTTGAACGGCGAAGCGACTGGTCAGGATGATGAGAGTTTCTTCGATTCTGATCAGCAAGGCGACGACGGCAAGTCCACGGAACTCAATCAGAAGATCGGAGACCTCGAGTCTCAGAATCAGGAACTGGCCAGAGATAACGATGCTATCAATCGTAAAATTGAGAGCTTGACGGCGGAGATTGAGGAGTTGAGAGGAGCCGAATCCAAGGCCAAGCGTAAGATGGGTGAGATGGAGCGAGAGATTGACAAGTCCGATGAGGAGAGGAAGGTTCTTGAAGCCATAGCTTCTAGAGCTTCGGAGTTAGAGACCGAAGTTGCACGGCTGCAGCATGAACTGATCACGGCCAGGACGGAAGGGGAAGAGGCTACGGCGGAGGCGGAGAAGCTGAGGTCTGAGATTTCACAGAAAGGTGGTGGAATTGAGGAATTGGAGAAAGAGGTCGCTGGTTTAAGGACTGTCAAGGAGGAGAATGAGAAGAGAATGAAGGAATTGGAGTCAAAGCTTGGTGCTTTGGAGGTGAAGGAGTTAGATGAGAAGAACAAAAAGTTCCGTGCAGAGGAAGAGATGAGGGAGAAGATTGACAATAAGGAGAAGGAGGTTCATGATTTGAAGGAGAAGATTAAGAGTTTGGAATCAGATGTAGCAAAAGGGAAAACAGAGTTGCAGAAGTGGATAACAGAGAAGATGGTTGTGGAAGATTCGTTGAAAGATTCAGAGAAGAAAGTGGTGGCTTTGGAATCAGAGATTGTGGAGTTACAGAAACAGTTGGATGATGCTGAGAAGATGATCAATGGATTGAAGAATGTGGTTGAGGAGCCACTGAATGGCATTGAGTTCAAGTCATGGTCGCCGAATGTGACTGCTGTTGGTTCCGGTGGAGCTGTGGCAGCGGTTGCAGTTGCAGTGGCAGGAGCAGCTGTTGTCTGCTACATTTACCACTCGAGGAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005773 GO:0005774 GO:0006996 GO:0007005 GO:0008150 GO:0009536 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0071840 GO:0098573 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

36.12

Weight (kDa)

4.77

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCDC39	PF24161	55 - 269	1.2e-06	Coiled-coil domain-containing protein 39

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06530
malus_domestica	MD09G1151900.v1.1 MD17G1139500.v1.1
prunus_persica	Prupe.3G172600_v2.0.a1 Prupe.3G172600_v2.0.a1
pyrus_communis	pycom09g07140 pycom17g13260
rosa_chinensis	RchiOBHm_Chr2g0151481
rosa_laevigata	RLG00000020553
rosa_multiflora	Rmu_co8152832.1_g000001 Rmu_sc0000940.1_g000018 Rmu_sc0021528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096430
rosa_rugosa	Rorug02G0426500
rosa_samantha	Rh2AG487200 Rh2BG499600 Rh2CG473600 Rh2DG510800
rosa_wichuraiana	Rw2G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	842
AciI	CCGC	5 cut(s)	5, 191, 389, 395, 908
AcoI	YGGCCR	2 cut(s)	144, 360
AfiI	CCNNNNNNNGG	2 cut(s)	574, 842
AgsI	TTSAA	6 cut(s)	22, 293, 628, 724, 817, 856
AhdI	GACNNNNNGTC	2 cut(s)	88, 124
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	8 cut(s)	18, 183, 302, 311, 403, 520, 899, 935
AluI	AGCT	8 cut(s)	18, 183, 302, 311, 403, 520, 899, 935
Alw26I	GTCTC	3 cut(s)	111, 132, 317
AlwNI	CAGNNNCTG	1 cut(s)	142
Ama87I	CYCGRG	2 cut(s)	122, 958
AoxI	GGCC	3 cut(s)	144, 225, 360
ApeKI	GCWGC	4 cut(s)	340, 343, 905, 932
AsuHPI	GGTGA	2 cut(s)	254, 547
AvaI	CYCGRG	2 cut(s)	122, 958
BalI	TGGCCA	1 cut(s)	146
BbvCI	CCTCAGC	1 cut(s)	404
BbvI	GCAGC	4 cut(s)	327, 355, 917, 944
BccI	CCATC	3 cut(s)	232, 241, 697
BceAI	ACGGC	6 cut(s)	40, 100, 204, 353, 375, 402
BciT130I	CCWGG	1 cut(s)	364
BclI	TGATCA	3 cut(s)	67, 354, 804
BcoDI	GTCTC	3 cut(s)	111, 132, 317
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	341
BisI	GCNGC	4 cut(s)	341, 344, 906, 933
BlsI	GCNGC	4 cut(s)	342, 345, 907, 934
Bme1390I	CCNGG	1 cut(s)	364
BmeRI	GACNNNNNGTC	2 cut(s)	88, 124
BmeT110I	CYCGRG	2 cut(s)	122, 958
BmiI	GGNNCC	3 cut(s)	214, 834, 889
BmrFI	CCNGG	1 cut(s)	364
BmsI	GCATC	2 cut(s)	148, 781
Bpu10I	CCTNAGC	1 cut(s)	404
BsaBI	GATNNNNATC	1 cut(s)	66
BsaI	GGTCTC	2 cut(s)	111, 317
BsaJI	CCNNGG	2 cut(s)	93, 222
BsaWI	WCCGGW	1 cut(s)	890
BsaXI	ACNNNNNCTCC	2 cut(s)	921, 951
Bsc4I	CCNNNNNNNGG	2 cut(s)	574, 842
Bse1I	ACTGG	2 cut(s)	40, 147
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	2 cut(s)	93, 222
BseGI	GGATG	2 cut(s)	49, 793
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	574, 842
BseMII	CTCAG	4 cut(s)	143, 395, 402, 786
BseNI	ACTGG	2 cut(s)	40, 147
BseRI	GAGGAG	6 cut(s)	28, 215, 225, 290, 497, 845
BseXI	GCAGC	4 cut(s)	327, 355, 917, 944
BsgI	GTGCAG	1 cut(s)	591
BshFI	GGCC	3 cut(s)	146, 227, 362
BsiHKCI	CYCGRG	2 cut(s)	122, 958
BsiSI	CCGG	1 cut(s)	891
BslI	CCNNNNNNNGG	2 cut(s)	574, 842
BsmAI	GTCTC	3 cut(s)	111, 132, 317
BsnI	GGCC	3 cut(s)	146, 227, 362
Bso31I	GGTCTC	2 cut(s)	111, 317
BsoBI	CYCGRG	2 cut(s)	122, 958
Bsp143I	GATC	4 cut(s)	67, 111, 354, 804
BspACI	CCGC	5 cut(s)	5, 191, 389, 395, 908
BspANI	GGCC	3 cut(s)	146, 227, 362
BspCNI	CTCAG	4 cut(s)	142, 396, 403, 787
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	3 cut(s)	214, 834, 889
BspMAI	CTGCAG	1 cut(s)	345
BspTNI	GGTCTC	2 cut(s)	111, 317
BsrI	ACTGG	2 cut(s)	40, 147
BssECI	CCNNGG	2 cut(s)	93, 222
BssMI	GATC	4 cut(s)	67, 111, 354, 804
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	2 cut(s)	475, 783
Bst6I	CTCTTC	4 cut(s)	3, 372, 488, 573
BstAPI	GCANNNNNTGC	1 cut(s)	911
BstDEI	CTNAG	4 cut(s)	129, 404, 411, 795
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	49, 793
BstKTI	GATC	4 cut(s)	70, 114, 357, 807
BstMAI	GTCTC	3 cut(s)	111, 132, 317
BstMBI	GATC	4 cut(s)	67, 111, 354, 804
BstMWI	GCNNNNNNNGC	6 cut(s)	24, 84, 308, 905, 911, 932
BstNI	CCWGG	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	341
BstV1I	GCAGC	4 cut(s)	327, 355, 917, 944
BsuRI	GGCC	3 cut(s)	146, 227, 362
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	49, 793
BtsI	GCAGTG	1 cut(s)	927
BtsIMutI	CAGTG	2 cut(s)	836, 927
CaiI	CAGNNNCTG	1 cut(s)	142
CciI	TCATGA	1 cut(s)	619
CviAII	CATG	3 cut(s)	347, 620, 861
DdeI	CTNAG	4 cut(s)	129, 404, 411, 795
DpnI	GATC	4 cut(s)	69, 113, 356, 806
DpnII	GATC	4 cut(s)	67, 111, 354, 804
DriI	GACNNNNNGTC	2 cut(s)	88, 124
EaeI	YGGCCR	2 cut(s)	144, 360
Eam1104I	CTCTTC	4 cut(s)	3, 372, 488, 573
Eam1105I	GACNNNNNGTC	2 cut(s)	88, 124
EarI	CTCTTC	4 cut(s)	3, 372, 488, 573
EciI	GGCGGA	4 cut(s)	20, 206, 404, 410
Eco130I	CCWWGG	1 cut(s)	222
Eco31I	GGTCTC	2 cut(s)	111, 317
Eco88I	CYCGRG	2 cut(s)	122, 958
EcoRII	CCWGG	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	3 cut(s)	350, 623, 864
FaiI	YATR	4 cut(s)	299, 348, 621, 862
FatI	CATG	3 cut(s)	346, 619, 860
FbaI	TGATCA	3 cut(s)	67, 354, 804
Fnu4HI	GCNGC	4 cut(s)	341, 344, 906, 933
FokI	GGATG	2 cut(s)	56, 800
Fsp4HI	GCNGC	4 cut(s)	341, 344, 906, 933
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	4 cut(s)	341, 344, 906, 933
HaeIII	GGCC	3 cut(s)	146, 227, 362
HapII	CCGG	1 cut(s)	891
Hin1II	CATG	3 cut(s)	350, 623, 864
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	9 cut(s)	62, 125, 133, 218, 512, 650, 716, 728, 755
HpaII	CCGG	1 cut(s)	891
HphI	GGTGA	2 cut(s)	254, 547
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188III	TCNNGA	5 cut(s)	41, 137, 290, 306, 620
Hpy8I	GTNNAC	1 cut(s)	93
Hpy99I	CGWCG	2 cut(s)	83, 86
HpyAV	CCTTC	6 cut(s)	277, 365, 496, 532, 604, 622
HpyCH4III	ACNGT	2 cut(s)	475, 783
HpyCH4V	TGCA	6 cut(s)	335, 343, 572, 682, 914, 920
HpyF10VI	GCNNNNNNNGC	6 cut(s)	24, 84, 308, 905, 911, 932
HpyF3I	CTNAG	4 cut(s)	129, 404, 411, 795
Hsp92II	CATG	3 cut(s)	350, 623, 864
Ksp22I	TGATCA	3 cut(s)	67, 354, 804
Kzo9I	GATC	4 cut(s)	67, 111, 354, 804
LmnI	GCTCC	6 cut(s)	15, 212, 250, 832, 896, 929
Lsp1109I	GCAGC	4 cut(s)	327, 355, 917, 944
LweI	GCATC	2 cut(s)	148, 781
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	771, 874
MalI	GATC	4 cut(s)	69, 113, 356, 806
MboI	GATC	4 cut(s)	67, 111, 354, 804
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	4 cut(s)	174, 435, 443, 506
MluNI	TGGCCA	1 cut(s)	146
MlyI	GAGTC	2 cut(s)	134, 521
MmeI	TCCRAC	1 cut(s)	765
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	2 cut(s)	467, 639
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	2 cut(s)	908, 935
MspI	CCGG	1 cut(s)	891
MspR9I	CCNGG	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	6 cut(s)	24, 84, 308, 905, 911, 932
NdeII	GATC	4 cut(s)	67, 111, 354, 804
NlaIII	CATG	3 cut(s)	350, 623, 864
NlaIV	GGNNCC	3 cut(s)	214, 834, 889
NmuCI	GTSAC	1 cut(s)	874
PaeR7I	CTCGAG	2 cut(s)	122, 958
PagI	TCATGA	1 cut(s)	619
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	7 cut(s)	62, 133, 218, 650, 716, 728, 755
PflMI	CCANNNNNTGG	1 cut(s)	842
PkrI	GCNGC	4 cut(s)	342, 345, 907, 934
PleI	GAGTC	2 cut(s)	133, 520
PpsI	GAGTC	2 cut(s)	133, 520
Psp6I	CCWGG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	3 cut(s)	214, 834, 889
PspXI	VCTCGAGB	2 cut(s)	122, 958
PstI	CTGCAG	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	935
SaqAI	TTAA	2 cut(s)	467, 639
SatI	GCNGC	4 cut(s)	341, 344, 906, 933
Sau3AI	GATC	4 cut(s)	67, 111, 354, 804
SchI	GAGTC	2 cut(s)	134, 521
ScrFI	CCNGG	1 cut(s)	364
SfaNI	GCATC	2 cut(s)	148, 781
SfcI	CTRYAG	1 cut(s)	341
Sfr274I	CTCGAG	2 cut(s)	122, 958
SlaI	CTCGAG	2 cut(s)	122, 958
SmlI	CTYRAG	2 cut(s)	122, 958
SmoI	CTYRAG	2 cut(s)	122, 958
Sse9I	AATT	4 cut(s)	174, 435, 443, 506
SsiI	CCGC	5 cut(s)	5, 191, 389, 395, 908
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	475, 783
TaqI	TCGA	3 cut(s)	60, 123, 959
TaqII	GACCGA	1 cut(s)	341
TasI	AATT	4 cut(s)	174, 435, 443, 506
TfiI	GAWTC	7 cut(s)	62, 133, 218, 650, 716, 728, 755
Tru1I	TTAA	2 cut(s)	467, 639
Tru9I	TTAA	2 cut(s)	467, 639
TscAI	CASTG	2 cut(s)	843, 927
TseFI	GTSAC	1 cut(s)	874
TseI	GCWGC	4 cut(s)	340, 343, 905, 932
Tsp45I	GTSAC	1 cut(s)	874
TspDTI	ATGAA	3 cut(s)	363, 515, 608
TspGWI	ACGGA	3 cut(s)	110, 383, 557
TspRI	CASTG	2 cut(s)	843, 927
Van91I	CCANNNNNTGG	1 cut(s)	842
XbaI	TCTAGA	1 cut(s)	305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XhoI	CTCGAG	2 cut(s)	122, 958
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.