Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0012364

Physical Location & Seq

Genomic Coordinates Forward (+)

10934634 .. 10935311

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g13260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAGCTTGAGACTGAGGTAGCGAGGCTCCAACACGATCTGATCTCCGCCATGGCCGAAGGGGAGGACGCGAATCACGAAGTTGCGGAGCTGAAGCGTGAGTTGGGAGAGAAGGGGGAGAAAATTGATAGCTTGGAGAAGGAGCTCGATAGCCTGAAGAAGGCGAAGGCTGATAGCGAGAAGAGGGTTAGGGAATTGGAGAGGAAGATTGGGGTTTTGGAAGTGAAGGAGACTGAGGAGAAGAGCAAGAAAATTAGGGTTGAGGAGGAGATGAGAGAGAGACTTGATGAGAAAGAGAGCGAGCTTAGCTTGTTCAAGAAAAAAGTGGAGGATTTGGAGTCAGTTATTGCGAAGAACAGTGCTGAATTGGGGAAGAGAGTGAACGAGAGGGTCAATGTCGAGGCAGCGCTGAGGGAATCGGAGGATAAGTGCAGAGCCATGGAAGTGAAGATGGGACAATTACAGAAGGACCTGATGGATGCTGAGAAGGTTATTACTGGATTGAAGGAGAGGACTGTTGAGGCCATTAATGGTAGTGCGAATGAAATGAAGGAGATTCTGGAAGGTGGAGAGACGGGGTCGAAAGGATTGAGCTTGCCAGTTGTGGCAGGGTCTACTGGAGTCGTTGTTGCCGCAGCAGCTGCTGTTGTCTATGTGTTGTATGTAAGGCAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009536 GO:0009987 GO:0016020 GO:0016043 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0042579 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

25.11

Weight (kDa)

5.11

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCDC39	PF24161	2 - 165	1.7e-06	Coiled-coil domain-containing protein 39

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06530
malus_domestica	MD09G1151900.v1.1 MD17G1139500.v1.1
prunus_persica	Prupe.3G172600_v2.0.a1 Prupe.3G172600_v2.0.a1
pyrus_communis	pycom09g07140 pycom17g13260
rosa_chinensis	RchiOBHm_Chr2g0151481
rosa_laevigata	RLG00000020553
rosa_multiflora	Rmu_co8152832.1_g000001 Rmu_sc0000940.1_g000018 Rmu_sc0021528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096430
rosa_rugosa	Rorug02G0426500
rosa_samantha	Rh2AG487200 Rh2BG499600 Rh2CG473600 Rh2DG510800
rosa_wichuraiana	Rw2G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	614
AccII	CGCG	1 cut(s)	71
AciI	CCGC	3 cut(s)	48, 86, 633
AcoI	YGGCCR	1 cut(s)	54
AcuI	CTGAAG	2 cut(s)	113, 176
AfeI	AGCGCT	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	316, 505
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	8 cut(s)	7, 91, 132, 145, 304, 309, 594, 641
AluI	AGCT	8 cut(s)	7, 91, 132, 145, 304, 309, 594, 641
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	4 cut(s)	5, 224, 274, 566
AlwNI	CAGNNNCTG	2 cut(s)	641, 644
Aor51HI	AGCGCT	1 cut(s)	408
AoxI	GGCC	2 cut(s)	54, 522
ApeKI	GCWGC	4 cut(s)	404, 635, 638, 641
AseI	ATTAAT	1 cut(s)	528
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	469
AvaII	GGWCC	1 cut(s)	469
BanII	GRGCYC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	147
BbvCI	CCTCAGC	1 cut(s)	410
BbvI	GCAGC	4 cut(s)	416, 628, 647, 650
BccI	CCATC	2 cut(s)	445, 469
BcoDI	GTCTC	4 cut(s)	5, 224, 274, 566
BfoI	RGCGCY	1 cut(s)	410
BisI	GCNGC	5 cut(s)	405, 633, 636, 639, 642
BlpI	GCTNAGC	1 cut(s)	305
BlsI	GCNGC	5 cut(s)	406, 634, 637, 640, 643
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	29
BmsI	GCATC	1 cut(s)	469
BpmI	CTGGAG	1 cut(s)	639
Bpu10I	CCTNAGC	1 cut(s)	410
Bpu1102I	GCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	51, 438
BsaXI	ACNNNNNCTCC	4 cut(s)	413, 443, 612, 642
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	3 cut(s)	502, 599, 622
BseDI	CCNNGG	2 cut(s)	51, 438
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	4 cut(s)	6, 225, 401, 474
BseNI	ACTGG	3 cut(s)	502, 599, 622
BseRI	GAGGAG	3 cut(s)	251, 278, 281
BseXI	GCAGC	4 cut(s)	416, 628, 647, 650
BsgI	GTGCAG	1 cut(s)	451
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	2 cut(s)	56, 524
BsiHKAI	GWGCWC	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	4 cut(s)	5, 224, 274, 566
BsmBI	CGTCTC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	468
BsnI	GGCC	2 cut(s)	56, 524
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	37, 42
Bsp1720I	GCTNAGC	1 cut(s)	305
Bsp19I	CCATGG	2 cut(s)	51, 438
BspACI	CCGC	3 cut(s)	48, 86, 633
BspANI	GGCC	2 cut(s)	56, 524
BspCNI	CTCAG	4 cut(s)	7, 226, 402, 475
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	29
BspQI	GCTCTTC	1 cut(s)	236
BsrI	ACTGG	3 cut(s)	502, 599, 622
BssECI	CCNNGG	2 cut(s)	51, 438
BssMI	GATC	2 cut(s)	37, 42
BssT1I	CCWWGG	2 cut(s)	51, 438
Bst4CI	ACNGT	2 cut(s)	359, 517
Bst6I	CTCTTC	3 cut(s)	176, 236, 368
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstC8I	GCNNGC	2 cut(s)	302, 596
BstDEI	CTNAG	5 cut(s)	15, 234, 305, 410, 483
BstDSI	CCRYGG	2 cut(s)	51, 438
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	1 cut(s)	71
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	2 cut(s)	40, 45
BstMAI	GTCTC	4 cut(s)	5, 224, 274, 566
BstMBI	GATC	2 cut(s)	37, 42
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 638, 641
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	4 cut(s)	416, 628, 647, 650
BsuRI	GGCC	2 cut(s)	56, 524
BtgI	CCRYGG	2 cut(s)	51, 438
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	302, 596
CaiI	CAGNNNCTG	2 cut(s)	641, 644
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	469
CseI	GACGC	1 cut(s)	77
CviAII	CATG	2 cut(s)	52, 439
DdeI	CTNAG	5 cut(s)	15, 234, 305, 410, 483
DpnI	GATC	2 cut(s)	39, 44
DpnII	GATC	2 cut(s)	37, 42
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	3 cut(s)	176, 236, 368
EarI	CTCTTC	3 cut(s)	176, 236, 368
EciI	GGCGGA	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	2 cut(s)	51, 438
Eco24I	GRGCYC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	469
Eco47III	AGCGCT	1 cut(s)	408
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	2 cut(s)	113, 176
EcoICRI	GAGCTC	1 cut(s)	145
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	469
EcoT14I	CCWWGG	2 cut(s)	51, 438
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	2 cut(s)	51, 438
Esp3I	CGTCTC	1 cut(s)	566
FaeI	CATG	2 cut(s)	55, 442
FaiI	YATR	4 cut(s)	53, 440, 654, 663
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	2 cut(s)	51, 438
FblI	GTMKAC	1 cut(s)	614
Fnu4HI	GCNGC	5 cut(s)	405, 633, 636, 639, 642
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	5 cut(s)	405, 633, 636, 639, 642
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	5 cut(s)	405, 633, 636, 639, 642
GsuI	CTGGAG	1 cut(s)	639
HaeII	RGCGCY	1 cut(s)	410
HaeIII	GGCC	2 cut(s)	56, 524
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	2 cut(s)	55, 442
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HinfI	GANTC	5 cut(s)	73, 338, 416, 556, 621
Hpy166II	GTNNAC	2 cut(s)	382, 615
Hpy188I	TCNGA	2 cut(s)	42, 421
Hpy188III	TCNNGA	3 cut(s)	77, 316, 560
Hpy8I	GTNNAC	2 cut(s)	382, 615
HpyCH4III	ACNGT	2 cut(s)	359, 517
HpyCH4V	TGCA	1 cut(s)	432
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 638, 641
HpyF3I	CTNAG	5 cut(s)	15, 234, 305, 410, 483
Hsp92II	CATG	2 cut(s)	55, 442
HspAI	GCGC	1 cut(s)	407
Kzo9I	GATC	2 cut(s)	37, 42
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	4 cut(s)	4, 33, 88, 142
LpnPI	CCDG	7 cut(s)	167, 483, 485, 545, 594, 603, 612
Lsp1109I	GCAGC	4 cut(s)	416, 628, 647, 650
LweI	GCATC	1 cut(s)	469
MalI	GATC	2 cut(s)	39, 44
MboI	GATC	2 cut(s)	37, 42
MboII	GAAGA	7 cut(s)	169, 193, 217, 253, 364, 385, 460
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	5 cut(s)	123, 194, 252, 365, 458
MlyI	GAGTC	2 cut(s)	347, 630
MmeI	TCCRAC	1 cut(s)	55
MseI	TTAA	1 cut(s)	528
MslI	CAYNNNNRTG	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	641
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	3 cut(s)	306, 638, 641
NcoI	CCATGG	2 cut(s)	51, 438
NdeII	GATC	2 cut(s)	37, 42
NlaIII	CATG	2 cut(s)	55, 442
NlaIV	GGNNCC	1 cut(s)	29
PciSI	GCTCTTC	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	3 cut(s)	73, 416, 556
PflFI	GACNNNGTC	1 cut(s)	577
PkrI	GCNGC	5 cut(s)	406, 634, 637, 640, 643
PleI	GAGTC	2 cut(s)	346, 629
PpsI	GAGTC	2 cut(s)	346, 629
PpuMI	RGGWCCY	1 cut(s)	469
PshBI	ATTAAT	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	469
PspPPI	RGGWCCY	1 cut(s)	469
PstNI	CAGNNNCTG	2 cut(s)	641, 644
PsyI	GACNNNGTC	1 cut(s)	577
PvuII	CAGCTG	1 cut(s)	641
RseI	CAYNNNNRTG	1 cut(s)	443
SacI	GAGCTC	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	5 cut(s)	405, 633, 636, 639, 642
Sau3AI	GATC	2 cut(s)	37, 42
Sau96I	GGNCC	1 cut(s)	469
SchI	GAGTC	2 cut(s)	347, 630
SduI	GDGCHC	1 cut(s)	147
SfaNI	GCATC	1 cut(s)	469
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	5 cut(s)	123, 194, 252, 365, 458
SsiI	CCGC	3 cut(s)	48, 86, 633
SstI	GAGCTC	1 cut(s)	147
StyI	CCWWGG	2 cut(s)	51, 438
TaaI	ACNGT	2 cut(s)	359, 517
TaqI	TCGA	3 cut(s)	147, 399, 581
TasI	AATT	5 cut(s)	123, 194, 252, 365, 458
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	3 cut(s)	73, 416, 556
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	4 cut(s)	404, 635, 638, 641
TspDTI	ATGAA	2 cut(s)	558, 563
TspRI	CASTG	1 cut(s)	364
Tth111I	GACNNNGTC	1 cut(s)	577
VpaK11BI	GGWCC	1 cut(s)	469
VspI	ATTAAT	1 cut(s)	528
XagI	CCTNNNNNAGG	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.