Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012364

Physical Location & Seq

Genomic Coordinates Reverse (-)

54728932 .. 54730293

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0426500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGACCAAGTTGACCAAGCAAATGTGTACGGTGTGCGGGTTGCTTGACATTCCTACTAAGGGTCTATCTTTTACGTGGACTAATCGACGAACTGAGGTTCGGTTGGATAGAGCTTTGGGAAACCTAAATTGGTTGGACTTTTGGCAAAAGTTGGAATGCTGCACTCTAACTAAATCAACTTCAGACCATTGTCCAATTTTGTTGTCCTTCTCAAGATTTGCTCTTAATTTTCGTCCTCATTTTAAGTTCCAGGGAATGTGGCTCAATCATCCTAACTTTATTCAACTAGTTGATGGGTTTTGGAATGCTCTGCAATTTCATGGTTGCCCACTGTTCATACTAAGCTCTAAGTTGAGTGCTTTGAAGATTATGCTCAAGAGTTGGAATAAGACACACTTTGGGAACATTCATGCAAGAGTGAACATGGCAAGACAGGCCCTCGATATTGTTCAGGCAGAAATTAATTTGATGGGGCCTTCTGAGGATCGGTGTTTAAGGGAAGATGAAGCTCTTGCCACATTCCAGTCTGAGCTGTTCATGCAGTATACCCTACTTAGAGAAAAGTCAAGGATTAGGTGGCTAAAGGATGGGGATCGCAACACTTCCTTTCTTCATAACATGGTTAAAGTCCAGAGTCTAAACAAGTCCATTACCTCCTTATTGACAGGACAAACTACTTTGCAGGATCAAGAGTCTATTGCGGACTACATTGTGCAACACTACACAAACTTGTTTTCTAGGGATCACAACATTATTGATTCTGGGTTGGTGGAGAGGACCATCCCTCACTTGGTTACAGAAGATGAGAATTTCTCTCTAGTTCGTATTCCCTGTGACGAGGAGGTGGCACAGGTAGTTCATTCCATGGATAGTAGTAGCTCACCTGACCCGGATGGTTTTGGGGGAGAATTTTTTAAGGCTTGCTGGTCTGTGGTCTCTAGGGATGTGATTGCTGCTGTGCGTAGCTTCTTTGAGTTGGGCTTTATTCCTCCTCACTTTAATTCTAATCTCATCATTCTAATTCCAAAGAAGTTGGAAGCGGAGAGTATATCTAATTACAGGCCAATAACTTTGGCTAACTTTGTTTTTAAGGTTATCACCAAGATATTGGCGGATCGCTTGGGTCTAGTTGCCTCGAGGATTGTCTCCCCCAACCAGAGTGCTTTCATACGAGGTAGATCGATTGTCGACCCGATTACCCTTACTTCAGAGTGTTTGAATCTTCTTGATCATAAGTGCAGGTCCGGAAATATTGCAATTAAATTTGATATTGCCAAGGCCTTTGATACTATTGATTGGAGCTTCCTTCTACGGGTTCTCCGAGATTTTGGCTTTGACCTAGGGTTTGTGAACTGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009536 GO:0009987 GO:0016020 GO:0016043 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0042579 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

453

Amino Acids

51.81

Weight (kDa)

7.99

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	341 - 446	9.6e-15	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06530
malus_domestica	MD09G1151900.v1.1 MD17G1139500.v1.1
prunus_persica	Prupe.3G172600_v2.0.a1 Prupe.3G172600_v2.0.a1
pyrus_communis	pycom09g07140 pycom17g13260
rosa_chinensis	RchiOBHm_Chr2g0151481
rosa_laevigata	RLG00000020553
rosa_multiflora	Rmu_co8152832.1_g000001 Rmu_sc0000940.1_g000018 Rmu_sc0021528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096430
rosa_rugosa	Rorug02G0426500
rosa_samantha	Rh2AG487200 Rh2BG499600 Rh2CG473600 Rh2DG510800
rosa_wichuraiana	Rw2G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1135
Acc36I	ACCTGC	1 cut(s)	1230
AccI	GTMKAC	2 cut(s)	545, 1188
AccIII	TCCGGA	1 cut(s)	1244
AciI	CCGC	4 cut(s)	36, 701, 1040, 1112
AclWI	GGATC	5 cut(s)	492, 600, 693, 750, 1122
AcsI	RAATTY	3 cut(s)	808, 908, 1262
AcuI	CTGAAG	2 cut(s)	165, 1191
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	3 cut(s)	59, 790, 1312
AgsI	TTSAA	3 cut(s)	284, 364, 1219
AhlI	ACTAGT	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	249
AjuI	GAANNNNNNNTTGG	2 cut(s)	112, 144
AluBI	AGCT	7 cut(s)	113, 345, 509, 532, 879, 966, 1302
AluI	AGCT	7 cut(s)	113, 345, 509, 532, 879, 966, 1302
Alw26I	GTCTC	2 cut(s)	940, 1150
AlwI	GGATC	5 cut(s)	492, 600, 693, 750, 1122
Ama87I	CYCGRG	1 cut(s)	1135
Aor13HI	TCCGGA	1 cut(s)	1244
AoxI	GGCC	4 cut(s)	435, 473, 1061, 1278
ApeKI	GCWGC	2 cut(s)	159, 953
ApoI	RAATTY	3 cut(s)	808, 908, 1262
ArsI	GACNNNNNNTTYG	2 cut(s)	1328, 1360
AseI	ATTAAT	1 cut(s)	462
AspA2I	CCTAGG	1 cut(s)	1339
AspS9I	GGNCC	4 cut(s)	436, 473, 777, 1242
AsuC2I	CCSGG	1 cut(s)	890
AsuHPI	GGTGA	2 cut(s)	873, 1090
AvaI	CYCGRG	1 cut(s)	1135
AvaII	GGWCC	2 cut(s)	777, 1242
AvrII	CCTAGG	1 cut(s)	1339
BbvI	GCAGC	2 cut(s)	146, 940
BccI	CCATC	5 cut(s)	287, 463, 581, 788, 887
BciT130I	CCWGG	1 cut(s)	251
BclI	TGATCA	1 cut(s)	1228
BcnI	CCSGG	1 cut(s)	890
BcoDI	GTCTC	2 cut(s)	940, 1150
BcuI	ACTAGT	1 cut(s)	286
BfaI	CTAG	6 cut(s)	287, 738, 818, 939, 1127, 1340
BfuAI	ACCTGC	1 cut(s)	1230
BisI	GCNGC	2 cut(s)	160, 954
BlnI	CCTAGG	1 cut(s)	1339
BlsI	GCNGC	2 cut(s)	161, 955
Bme1390I	CCNGG	2 cut(s)	251, 890
Bme18I	GGWCC	2 cut(s)	777, 1242
BmeT110I	CYCGRG	1 cut(s)	1135
BmgT120I	GGNCC	4 cut(s)	436, 473, 777, 1242
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	2 cut(s)	251, 890
BoxI	GACNNNNGTC	1 cut(s)	189
BplI	GAGNNNNNCTC	2 cut(s)	797, 829
BpuEI	CTTGAG	2 cut(s)	196, 359
BpuMI	CCSGG	1 cut(s)	890
Bsa29I	ATCGAT	1 cut(s)	1181
BsaAI	YACGTR	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	591
BsaI	GGTCTC	1 cut(s)	940
BsaJI	CCNNGG	4 cut(s)	250, 864, 1275, 1339
BsaWI	WCCGGW	1 cut(s)	1244
BsaXI	ACNNNNNCTCC	2 cut(s)	1302, 1332
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 790, 1312
Bse1I	ACTGG	2 cut(s)	523, 1358
Bse8I	GATNNNNATC	1 cut(s)	591
BseAI	TCCGGA	1 cut(s)	1244
BseBI	CCWGG	1 cut(s)	251
BseCI	ATCGAT	1 cut(s)	1181
BseDI	CCNNGG	4 cut(s)	250, 864, 1275, 1339
BseGI	GGATG	5 cut(s)	268, 592, 780, 898, 949
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	3 cut(s)	59, 790, 1312
BseMII	CTCAG	3 cut(s)	84, 471, 519
BseNI	ACTGG	2 cut(s)	523, 1358
BseRI	GAGGAG	2 cut(s)	854, 981
BseXI	GCAGC	2 cut(s)	146, 940
BsgI	GTGCAG	2 cut(s)	145, 1258
BshFI	GGCC	4 cut(s)	437, 475, 1063, 1280
BshVI	ATCGAT	1 cut(s)	1181
BsiHKCI	CYCGRG	1 cut(s)	1135
BsiSI	CCGG	2 cut(s)	890, 1245
BslI	CCNNNNNNNGG	3 cut(s)	59, 790, 1312
BsmAI	GTCTC	2 cut(s)	940, 1150
BsmI	GAATGC	2 cut(s)	161, 310
BsnI	GGCC	4 cut(s)	437, 475, 1063, 1280
Bso31I	GGTCTC	1 cut(s)	940
BsoBI	CYCGRG	1 cut(s)	1135
Bsp13I	TCCGGA	1 cut(s)	1244
Bsp143I	GATC	7 cut(s)	484, 592, 685, 742, 1114, 1178, 1228
Bsp19I	CCATGG	1 cut(s)	864
BspACI	CCGC	4 cut(s)	36, 701, 1040, 1112
BspANI	GGCC	4 cut(s)	437, 475, 1063, 1280
BspCNI	CTCAG	3 cut(s)	85, 472, 520
BspDI	ATCGAT	1 cut(s)	1181
BspEI	TCCGGA	1 cut(s)	1244
BspLI	GGNNCC	1 cut(s)	474
BspMI	ACCTGC	1 cut(s)	1230
BspPI	GGATC	5 cut(s)	492, 600, 693, 750, 1122
BspTNI	GGTCTC	1 cut(s)	940
BsrI	ACTGG	2 cut(s)	523, 1358
BssECI	CCNNGG	4 cut(s)	250, 864, 1275, 1339
BssMI	GATC	7 cut(s)	484, 592, 685, 742, 1114, 1178, 1228
BssNAI	GTATAC	1 cut(s)	546
BssT1I	CCWWGG	3 cut(s)	864, 1275, 1339
Bst1107I	GTATAC	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	31, 333
BstBAI	YACGTR	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	922
BstDEI	CTNAG	7 cut(s)	57, 93, 341, 348, 480, 528, 554
BstDSI	CCRYGG	1 cut(s)	864
BstF5I	GGATG	5 cut(s)	268, 592, 780, 898, 949
BstKTI	GATC	7 cut(s)	487, 595, 688, 745, 1117, 1181, 1231
BstMAI	GTCTC	2 cut(s)	940, 1150
BstMBI	GATC	7 cut(s)	484, 592, 685, 742, 1114, 1178, 1228
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 538
BstNI	CCWGG	1 cut(s)	251
BstPAI	GACNNNNGTC	1 cut(s)	189
BstSCI	CCNGG	2 cut(s)	249, 888
BstV1I	GCAGC	2 cut(s)	146, 940
BstXI	CCANNNNNNTGG	1 cut(s)	1108
BstZ17I	GTATAC	1 cut(s)	546
Bsu15I	ATCGAT	1 cut(s)	1181
BsuRI	GGCC	4 cut(s)	437, 475, 1063, 1280
BsuTUI	ATCGAT	1 cut(s)	1181
BtgI	CCRYGG	1 cut(s)	864
BtsCI	GGATG	5 cut(s)	268, 592, 780, 898, 949
BtsIMutI	CAGTG	1 cut(s)	329
BveI	ACCTGC	1 cut(s)	1230
Cac8I	GCNNGC	1 cut(s)	922
Cfr13I	GGNCC	4 cut(s)	436, 473, 777, 1242
ClaI	ATCGAT	1 cut(s)	1181
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	6 cut(s)	320, 410, 424, 538, 619, 865
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	7 cut(s)	57, 93, 341, 348, 480, 528, 554
DpnI	GATC	7 cut(s)	486, 594, 687, 744, 1116, 1180, 1230
DpnII	GATC	7 cut(s)	484, 592, 685, 742, 1114, 1178, 1228
EciI	GGCGGA	1 cut(s)	1127
Eco130I	CCWWGG	3 cut(s)	864, 1275, 1339
Eco147I	AGGCCT	1 cut(s)	1280
Eco31I	GGTCTC	1 cut(s)	940
Eco47I	GGWCC	2 cut(s)	777, 1242
Eco57I	CTGAAG	2 cut(s)	165, 1191
Eco88I	CYCGRG	1 cut(s)	1135
EcoO109I	RGGNCCY	2 cut(s)	436, 473
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	3 cut(s)	864, 1275, 1339
ErhI	CCWWGG	3 cut(s)	864, 1275, 1339
FaeI	CATG	6 cut(s)	323, 413, 427, 541, 622, 868
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FatI	CATG	6 cut(s)	319, 409, 423, 537, 618, 864
FauI	CCCGC	1 cut(s)	29
FbaI	TGATCA	1 cut(s)	1228
FblI	GTMKAC	2 cut(s)	545, 1188
Fnu4HI	GCNGC	2 cut(s)	160, 954
FokI	GGATG	5 cut(s)	255, 599, 767, 905, 956
Fsp4HI	GCNGC	2 cut(s)	160, 954
FspBI	CTAG	6 cut(s)	287, 738, 818, 939, 1127, 1340
GluI	GCNGC	2 cut(s)	160, 954
HaeIII	GGCC	4 cut(s)	437, 475, 1063, 1280
HapII	CCGG	2 cut(s)	890, 1245
Hin1II	CATG	6 cut(s)	323, 413, 427, 541, 622, 868
HincII	GTYRAC	2 cut(s)	12, 1189
HindII	GTYRAC	2 cut(s)	12, 1189
HinfI	GANTC	4 cut(s)	634, 692, 758, 1219
HpaII	CCGG	2 cut(s)	890, 1245
HphI	GGTGA	2 cut(s)	873, 1090
Hpy166II	GTNNAC	7 cut(s)	12, 27, 78, 421, 546, 1189, 1351
Hpy188I	TCNGA	5 cut(s)	184, 481, 529, 1210, 1322
Hpy188III	TCNNGA	6 cut(s)	213, 376, 631, 689, 1226, 1245
Hpy8I	GTNNAC	7 cut(s)	12, 27, 78, 421, 546, 1189, 1351
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	3 cut(s)	217, 486, 1316
HpyCH4III	ACNGT	2 cut(s)	31, 333
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	8 cut(s)	162, 313, 413, 541, 682, 715, 1239, 1256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 538
HpyF3I	CTNAG	7 cut(s)	57, 93, 341, 348, 480, 528, 554
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	6 cut(s)	323, 413, 427, 541, 622, 868
Kpn2I	TCCGGA	1 cut(s)	1244
Ksp22I	TGATCA	1 cut(s)	1228
Kzo9I	GATC	7 cut(s)	484, 592, 685, 742, 1114, 1178, 1228
LmnI	GCTCC	1 cut(s)	1299
Lsp1109I	GCAGC	2 cut(s)	146, 940
MaeI	CTAG	6 cut(s)	287, 738, 818, 939, 1127, 1340
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	793, 833
MalI	GATC	7 cut(s)	486, 594, 687, 744, 1116, 1180, 1230
MboI	GATC	7 cut(s)	484, 592, 685, 742, 1114, 1178, 1228
MboII	GAAGA	5 cut(s)	376, 512, 602, 812, 1214
MlyI	GAGTC	2 cut(s)	643, 701
MmeI	TCCRAC	5 cut(s)	84, 114, 132, 362, 1014
MroI	TCCGGA	1 cut(s)	1244
MspI	CCGG	2 cut(s)	890, 1245
MspR9I	CCNGG	2 cut(s)	251, 890
Mva1269I	GAATGC	2 cut(s)	161, 310
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	2 cut(s)	434, 538
NciI	CCSGG	1 cut(s)	890
NcoI	CCATGG	1 cut(s)	864
NdeII	GATC	7 cut(s)	484, 592, 685, 742, 1114, 1178, 1228
NlaIII	CATG	6 cut(s)	323, 413, 427, 541, 622, 868
NlaIV	GGNNCC	1 cut(s)	474
NmuCI	GTSAC	1 cut(s)	833
PaeR7I	CTCGAG	1 cut(s)	1135
PceI	AGGCCT	1 cut(s)	1280
PcsI	WCGNNNNNNNCGW	1 cut(s)	1318
PctI	GAATGC	2 cut(s)	161, 310
PfeI	GAWTC	2 cut(s)	758, 1219
PkrI	GCNGC	2 cut(s)	161, 955
PleI	GAGTC	2 cut(s)	642, 700
PpsI	GAGTC	2 cut(s)	642, 700
Ppu21I	YACGTR	1 cut(s)	75
PshAI	GACNNNNGTC	1 cut(s)	189
PshBI	ATTAAT	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	474
PspPI	GGNCC	4 cut(s)	436, 473, 777, 1242
PspXI	VCTCGAGB	1 cut(s)	1135
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SalI	GTCGAC	1 cut(s)	1187
SatI	GCNGC	2 cut(s)	160, 954
Sau3AI	GATC	7 cut(s)	484, 592, 685, 742, 1114, 1178, 1228
Sau96I	GGNCC	4 cut(s)	436, 473, 777, 1242
SchI	GAGTC	2 cut(s)	643, 701
ScrFI	CCNGG	2 cut(s)	251, 890
Sfr274I	CTCGAG	1 cut(s)	1135
SinI	GGWCC	2 cut(s)	777, 1242
SlaI	CTCGAG	1 cut(s)	1135
SmlI	CTYRAG	3 cut(s)	211, 374, 1135
SmoI	CTYRAG	3 cut(s)	211, 374, 1135
SpeI	ACTAGT	1 cut(s)	286
SseBI	AGGCCT	1 cut(s)	1280
SsiI	CCGC	4 cut(s)	36, 701, 1040, 1112
SspI	AATATT	1 cut(s)	1252
SspMI	CTAG	6 cut(s)	287, 738, 818, 939, 1127, 1340
StuI	AGGCCT	1 cut(s)	1280
StyD4I	CCNGG	2 cut(s)	249, 888
StyI	CCWWGG	3 cut(s)	864, 1275, 1339
TaaI	ACNGT	2 cut(s)	31, 333
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	5 cut(s)	85, 441, 1136, 1181, 1188
TfiI	GAWTC	2 cut(s)	758, 1219
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	833
TseI	GCWGC	2 cut(s)	159, 953
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	8 cut(s)	308, 325, 398, 519, 526, 602, 848, 1156
TspRI	CASTG	1 cut(s)	336
VpaK11BI	GGWCC	2 cut(s)	777, 1242
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	3 cut(s)	808, 908, 1262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	787
XhoI	CTCGAG	1 cut(s)	1135
XmaJI	CCTAGG	1 cut(s)	1339
XmiI	GTMKAC	2 cut(s)	545, 1188
XspI	CTAG	6 cut(s)	287, 738, 818, 939, 1127, 1340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.