Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021528.1

Orthogroup ID

OG0012364

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1056

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021528.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

aatcagaaaccctacaagttcttctttcactctcaacatcgatacatcactcacagctcccgatcgccggtttccggttgccgattgccttcagggttaggaatggcagagccgagggaggtgaagatcgttaatgatggcggcgatggtggcgatgatttctacgacgctgatcagacggcgtcgctgagccggaaggtgtcgtcgttagagtgggagaagggggaactggagaaagagaacagagaaaccaaggagaagataggccaactgacgaaggagattgagactttgaagagcggcgagagggagatgaaggacaagctcagggagatggagttgcaggtggagcggaacgaggagggcaagaatttgctggagactgttgccaaccgagccatggaccttgagactgaggtcggtaggcttcaacaggatttgatcactgcaatcactgaaggcgaggaggccaataccgagcttgcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009536 GO:0009987 GO:0016020 GO:0016043 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0042579 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.4

Weight (kDa)

4.93

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06530
malus_domestica	MD09G1151900.v1.1 MD17G1139500.v1.1
prunus_persica	Prupe.3G172600_v2.0.a1 Prupe.3G172600_v2.0.a1
pyrus_communis	pycom09g07140 pycom17g13260
rosa_chinensis	RchiOBHm_Chr2g0151481
rosa_laevigata	RLG00000020553
rosa_multiflora	Rmu_co8152832.1_g000001 Rmu_sc0000940.1_g000018 Rmu_sc0021528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096430
rosa_rugosa	Rorug02G0426500
rosa_samantha	Rh2AG487200 Rh2BG499600 Rh2CG473600 Rh2DG510800
rosa_wichuraiana	Rw2G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
Acc36I	ACCTGC	1 cut(s)	334
AccBSI	CCGCTC	2 cut(s)	300, 352
AciI	CCGC	3 cut(s)	141, 300, 352
AcsI	RAATTY	1 cut(s)	370
AcuI	CTGAAG	2 cut(s)	75, 477
AcyI	GRCGYC	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	67, 74, 400
AgsI	TTSAA	2 cut(s)	295, 431
AluBI	AGCT	3 cut(s)	57, 325, 481
AluI	AGCT	3 cut(s)	57, 325, 481
Alw26I	GTCTC	3 cut(s)	281, 374, 404
AoxI	GGCC	2 cut(s)	265, 468
ApoI	RAATTY	1 cut(s)	370
AspS9I	GGNCC	1 cut(s)	403
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	403
BccI	CCATC	3 cut(s)	131, 140, 328
BceAI	ACGGC	1 cut(s)	195
BclI	TGATCA	2 cut(s)	172, 441
BcoDI	GTCTC	3 cut(s)	281, 374, 404
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	2 cut(s)	142, 301
BlpI	GCTNAGC	1 cut(s)	188
BlsI	GCNGC	2 cut(s)	143, 302
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	403
BoxI	GACNNNNGTC	1 cut(s)	416
BpmI	CTGGAG	2 cut(s)	251, 398
Bpu10I	CCTNAGC	1 cut(s)	326
Bpu1102I	GCTNAGC	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	428
Bsa29I	ATCGAT	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	182
BsaJI	CCNNGG	3 cut(s)	113, 252, 399
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 74, 400
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	234
BseCI	ATCGAT	1 cut(s)	40
BseDI	CCNNGG	3 cut(s)	113, 252, 399
BseLI	CCNNNNNNNGG	3 cut(s)	67, 74, 400
BseMII	CTCAG	3 cut(s)	179, 340, 405
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	2 cut(s)	374, 479
Bsh1285I	CGRYCG	1 cut(s)	65
BshFI	GGCC	2 cut(s)	267, 470
BshVI	ATCGAT	1 cut(s)	40
BsiEI	CGRYCG	1 cut(s)	65
BsiSI	CCGG	3 cut(s)	68, 75, 193
BslI	CCNNNNNNNGG	3 cut(s)	67, 74, 400
BsmAI	GTCTC	3 cut(s)	281, 374, 404
BsnI	GGCC	2 cut(s)	267, 470
Bsp143I	GATC	4 cut(s)	62, 126, 172, 441
Bsp1720I	GCTNAGC	1 cut(s)	188
Bsp19I	CCATGG	1 cut(s)	399
BspACI	CCGC	3 cut(s)	141, 300, 352
BspANI	GGCC	2 cut(s)	267, 470
BspCNI	CTCAG	3 cut(s)	180, 339, 406
BspDI	ATCGAT	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	334
BspQI	GCTCTTC	1 cut(s)	290
BsrBI	CCGCTC	2 cut(s)	300, 352
BsrFI	RCCGGY	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	3 cut(s)	113, 252, 399
BssMI	GATC	4 cut(s)	62, 126, 172, 441
BssNI	GRCGYC	1 cut(s)	182
BssT1I	CCWWGG	2 cut(s)	252, 399
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	1 cut(s)	290
BstACI	GRCGYC	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	3 cut(s)	188, 326, 414
BstDSI	CCRYGG	1 cut(s)	399
BstKTI	GATC	4 cut(s)	65, 129, 175, 444
BstMAI	GTCTC	3 cut(s)	281, 374, 404
BstMBI	GATC	4 cut(s)	62, 126, 172, 441
BstMCI	CGRYCG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 349, 395
BstPAI	GACNNNNGTC	1 cut(s)	416
Bsu15I	ATCGAT	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	267, 470
BsuTUI	ATCGAT	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	399
BtgZI	GCGATG	2 cut(s)	159, 168
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	2 cut(s)	444, 453
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	483
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	403
ClaI	ATCGAT	1 cut(s)	40
CseI	GACGC	2 cut(s)	171, 176
CviAII	CATG	1 cut(s)	400
CviJI	RGCY	9 cut(s)	57, 112, 192, 267, 325, 398, 427, 470, 481
CviKI_1	RGCY	9 cut(s)	57, 112, 192, 267, 325, 398, 427, 470, 481
DdeI	CTNAG	3 cut(s)	188, 326, 414
DpnI	GATC	4 cut(s)	64, 128, 174, 443
DpnII	GATC	4 cut(s)	62, 126, 172, 441
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Eco130I	CCWWGG	2 cut(s)	252, 399
Eco47I	GGWCC	1 cut(s)	403
Eco57I	CTGAAG	2 cut(s)	75, 477
EcoT14I	CCWWGG	2 cut(s)	252, 399
ErhI	CCWWGG	2 cut(s)	252, 399
FaeI	CATG	1 cut(s)	403
FaiI	YATR	1 cut(s)	401
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	1 cut(s)	399
FbaI	TGATCA	2 cut(s)	172, 441
Fnu4HI	GCNGC	2 cut(s)	142, 301
Fsp4HI	GCNGC	2 cut(s)	142, 301
GluI	GCNGC	2 cut(s)	142, 301
GsuI	CTGGAG	2 cut(s)	251, 398
HaeIII	GGCC	2 cut(s)	267, 470
HapII	CCGG	3 cut(s)	68, 75, 193
HgaI	GACGC	2 cut(s)	171, 176
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	1 cut(s)	403
HpaII	CCGG	3 cut(s)	68, 75, 193
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	6, 177
Hpy188III	TCNNGA	1 cut(s)	60
Hpy99I	CGWCG	3 cut(s)	170, 187, 208
HpyAV	CCTTC	6 cut(s)	99, 190, 214, 271, 310, 452
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4V	TGCA	2 cut(s)	343, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 349, 395
HpyF3I	CTNAG	3 cut(s)	188, 326, 414
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	1 cut(s)	403
Ksp22I	TGATCA	2 cut(s)	172, 441
Kzo9I	GATC	4 cut(s)	62, 126, 172, 441
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	62, 349
LpnPI	CCDG	9 cut(s)	78, 81, 88, 206, 215, 313, 329, 362, 419
MalI	GATC	4 cut(s)	64, 128, 174, 443
MbiI	CCGCTC	2 cut(s)	300, 352
MboI	GATC	4 cut(s)	62, 126, 172, 441
MboII	GAAGA	4 cut(s)	13, 136, 271, 307
MluCI	AATT	1 cut(s)	370
MnlI	CCTC	8 cut(s)	108, 112, 300, 352, 355, 409, 457, 460
MseI	TTAA	1 cut(s)	132
MspI	CCGG	3 cut(s)	68, 75, 193
MwoI	GCNNNNNNNGC	3 cut(s)	150, 349, 395
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	4 cut(s)	62, 126, 172, 441
NlaIII	CATG	1 cut(s)	403
NmeAIII	GCCGAG	1 cut(s)	138
PaqCI	CACCTGC	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	290
PflFI	GACNNNGTC	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	143, 302
Ple19I	CGATCG	1 cut(s)	65
PshAI	GACNNNNGTC	1 cut(s)	416
PspPI	GGNCC	1 cut(s)	403
PsyI	GACNNNGTC	1 cut(s)	181
PvuI	CGATCG	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	2 cut(s)	142, 301
Sau3AI	GATC	4 cut(s)	62, 126, 172, 441
Sau96I	GGNCC	1 cut(s)	403
SetI	ASST	8 cut(s)	59, 123, 201, 327, 348, 408, 420, 483
SinI	GGWCC	1 cut(s)	403
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	1 cut(s)	370
SsiI	CCGC	3 cut(s)	141, 300, 352
StyI	CCWWGG	2 cut(s)	252, 399
TaaI	ACNGT	1 cut(s)	385
TaqI	TCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	370
TauI	GCSGC	2 cut(s)	144, 303
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	2 cut(s)	451, 460
TspDTI	ATGAA	1 cut(s)	329
TspRI	CASTG	2 cut(s)	451, 460
Tth111I	GACNNNGTC	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	1 cut(s)	370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.