Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0012364

Physical Location & Seq

Genomic Coordinates Forward (+)

5352194 .. 5352988

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCGGAGATCGAGAAATTAAAGAGCAGCGAGAAGGAGACGAAGGAGAGGCTCAGGGAGATGGAATTGGAGATTGAACGGACCGAGGAGGGGAAAGATGTGCTGCAATCGGTTGCGAATAGAGCGATGGAGCTTGAGACTGAGGTAGCGAGGCTCCAACACGATCTGATCTCCGCCATGGCAGAAGGGGAGGATGCAAATAATGAAGTGGCGGAGCTGAAGCGTGTGTTGGGCGAGAAGGGGGAGAAAATTGATAGCTTGGAGAAGGAGCTTGAGAGCCTGAAGAAGGCGAAGGCTGATAGCGAGAAGAGGGTTAGGGAATTGGAGAGAAAGATTGGGGTTTTGGAAGTGAAGGAGACTGAGGAGAAGAGCAAGAAAATTAGGGTTGAGGAGGAGATGAGAGAGAGACTTGATGAGAAAGAGAGTGAGCTTAGCTTGTTCAAGAAGAAAGTGGAGGATTTGGAGTCGGTGATTGTGAAGAACAATGCTGAATTGGGGAAGAGAGTGAGTGAGAAGCTCAATGTCGAGGCGGCGTTGAGGGAATCAGAGGATAAGTGCAGAGGCATGGAAATGAAGATGGGAAAATTGCAGAAGGATGTGCTGGATGCTGAAAAGGTTATTAATGGATTGAAGGTGAGGACTGTTGGGGAAATTAATGGGACTGTGAATGAAGTGAAGGAGATTTCTAGAGAGACAGAGTTGAAAGGATTGAGCTTGCCAGTTGTGGCAGGGTCCACTGGAGTCGTTGCCGCAGCAGCTGCTGTTGTCTATATGTTGTATGTAAGGCAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009536 GO:0009987 GO:0016020 GO:0016043 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0042579 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

29.88

Weight (kDa)

5.21

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCDC39	PF24161	5 - 210	5e-07	Coiled-coil domain-containing protein 39

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06530
malus_domestica	MD09G1151900.v1.1 MD17G1139500.v1.1
prunus_persica	Prupe.3G172600_v2.0.a1 Prupe.3G172600_v2.0.a1
pyrus_communis	pycom09g07140 pycom17g13260
rosa_chinensis	RchiOBHm_Chr2g0151481
rosa_laevigata	RLG00000020553
rosa_multiflora	Rmu_co8152832.1_g000001 Rmu_sc0000940.1_g000018 Rmu_sc0021528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096430
rosa_rugosa	Rorug02G0426500
rosa_samantha	Rh2AG487200 Rh2BG499600 Rh2CG473600 Rh2DG510800
rosa_wichuraiana	Rw2G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 174, 212, 530, 750
AcuI	CTGAAG	2 cut(s)	239, 302
AfiI	CCNNNNNNNGG	2 cut(s)	90, 286
AgsI	TTSAA	4 cut(s)	77, 442, 631, 703
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	9 cut(s)	133, 217, 258, 271, 430, 435, 517, 714, 758
AluI	AGCT	9 cut(s)	133, 217, 258, 271, 430, 435, 517, 714, 758
Alw26I	GTCTC	5 cut(s)	32, 131, 350, 400, 686
AlwNI	CAGNNNCTG	2 cut(s)	758, 761
ApeKI	GCWGC	5 cut(s)	27, 103, 752, 755, 758
AseI	ATTAAT	2 cut(s)	621, 654
AspS9I	GGNCC	2 cut(s)	81, 732
AsuHPI	GGTGA	2 cut(s)	481, 646
AvaII	GGWCC	2 cut(s)	81, 732
BbvI	GCAGC	5 cut(s)	39, 90, 745, 764, 767
BccI	CCATC	3 cut(s)	55, 121, 571
BcoDI	GTCTC	5 cut(s)	32, 131, 350, 400, 686
BfaI	CTAG	1 cut(s)	687
BisI	GCNGC	7 cut(s)	28, 104, 531, 750, 753, 756, 759
BlpI	GCTNAGC	1 cut(s)	431
BlsI	GCNGC	7 cut(s)	29, 105, 532, 751, 754, 757, 760
Bme18I	GGWCC	2 cut(s)	81, 732
BmgT120I	GGNCC	2 cut(s)	81, 732
BmiI	GGNNCC	2 cut(s)	155, 733
BmsI	GCATC	2 cut(s)	184, 595
BpmI	CTGGAG	1 cut(s)	759
Bpu10I	CCTNAGC	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	431
BpuEI	CTTGAG	2 cut(s)	155, 293
BsaJI	CCNNGG	2 cut(s)	84, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 286
Bse1I	ACTGG	2 cut(s)	719, 742
BseDI	CCNNGG	2 cut(s)	84, 177
BseGI	GGATG	3 cut(s)	199, 601, 610
BseLI	CCNNNNNNNGG	2 cut(s)	90, 286
BseMII	CTCAG	3 cut(s)	67, 132, 351
BseNI	ACTGG	2 cut(s)	719, 742
BseRI	GAGGAG	4 cut(s)	101, 377, 404, 407
BseXI	GCAGC	5 cut(s)	39, 90, 745, 764, 767
BsgI	GTGCAG	1 cut(s)	577
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	2 cut(s)	90, 286
BsmAI	GTCTC	5 cut(s)	32, 131, 350, 400, 686
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	673
Bsp143I	GATC	3 cut(s)	9, 163, 168
Bsp1720I	GCTNAGC	1 cut(s)	431
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	5 cut(s)	5, 174, 212, 530, 750
BspCNI	CTCAG	3 cut(s)	66, 133, 352
BspLI	GGNNCC	2 cut(s)	155, 733
BspQI	GCTCTTC	1 cut(s)	362
BsrI	ACTGG	2 cut(s)	719, 742
BssECI	CCNNGG	2 cut(s)	84, 177
BssMI	GATC	3 cut(s)	9, 163, 168
BssT1I	CCWWGG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	643, 664
Bst6I	CTCTTC	3 cut(s)	302, 362, 494
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	1 cut(s)	716
BstDEI	CTNAG	4 cut(s)	53, 141, 360, 431
BstDSI	CCRYGG	1 cut(s)	177
BstENI	CCTNNNNNAGG	1 cut(s)	284
BstF5I	GGATG	3 cut(s)	199, 601, 610
BstKTI	GATC	3 cut(s)	12, 166, 171
BstMAI	GTCTC	5 cut(s)	32, 131, 350, 400, 686
BstMBI	GATC	3 cut(s)	9, 163, 168
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 755, 758
BstV1I	GCAGC	5 cut(s)	39, 90, 745, 764, 767
BtgI	CCRYGG	1 cut(s)	177
BtgZI	GCGATG	1 cut(s)	140
BtsCI	GGATG	3 cut(s)	199, 601, 610
BtsIMutI	CAGTG	1 cut(s)	735
Cac8I	GCNNGC	1 cut(s)	716
CaiI	CAGNNNCTG	2 cut(s)	758, 761
Cfr13I	GGNCC	2 cut(s)	81, 732
CpoI	CGGWCCG	1 cut(s)	81
CspI	CGGWCCG	1 cut(s)	81
CviAII	CATG	2 cut(s)	178, 565
DdeI	CTNAG	4 cut(s)	53, 141, 360, 431
DpnI	GATC	3 cut(s)	11, 165, 170
DpnII	GATC	3 cut(s)	9, 163, 168
Eam1104I	CTCTTC	3 cut(s)	302, 362, 494
EarI	CTCTTC	3 cut(s)	302, 362, 494
EciI	GGCGGA	3 cut(s)	20, 163, 227
Eco130I	CCWWGG	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	81, 732
Eco57I	CTGAAG	2 cut(s)	239, 302
EcoNI	CCTNNNNNAGG	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	2 cut(s)	181, 568
FaiI	YATR	5 cut(s)	179, 566, 771, 773, 780
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	2 cut(s)	177, 564
Fnu4HI	GCNGC	7 cut(s)	28, 104, 531, 750, 753, 756, 759
FokI	GGATG	3 cut(s)	206, 608, 617
Fsp4HI	GCNGC	7 cut(s)	28, 104, 531, 750, 753, 756, 759
FspBI	CTAG	1 cut(s)	687
GluI	GCNGC	7 cut(s)	28, 104, 531, 750, 753, 756, 759
GsuI	CTGGAG	1 cut(s)	759
Hin1II	CATG	2 cut(s)	181, 568
HinfI	GANTC	3 cut(s)	464, 542, 741
HphI	GGTGA	2 cut(s)	481, 646
Hpy166II	GTNNAC	1 cut(s)	735
Hpy188I	TCNGA	2 cut(s)	168, 547
Hpy188III	TCNNGA	3 cut(s)	13, 442, 687
Hpy8I	GTNNAC	1 cut(s)	735
HpyCH4III	ACNGT	2 cut(s)	643, 664
HpyCH4V	TGCA	4 cut(s)	106, 197, 558, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 755, 758
HpyF3I	CTNAG	4 cut(s)	53, 141, 360, 431
Hsp92II	CATG	2 cut(s)	181, 568
Kzo9I	GATC	3 cut(s)	9, 163, 168
LguI	GCTCTTC	1 cut(s)	362
LmnI	GCTCC	4 cut(s)	130, 159, 214, 268
LpnPI	CCDG	6 cut(s)	40, 293, 587, 714, 723, 732
Lsp1109I	GCAGC	5 cut(s)	39, 90, 745, 764, 767
LweI	GCATC	2 cut(s)	184, 595
MaeI	CTAG	1 cut(s)	687
MalI	GATC	3 cut(s)	11, 165, 170
MboI	GATC	3 cut(s)	9, 163, 168
MboII	GAAGA	7 cut(s)	295, 319, 379, 457, 490, 511, 586
MluCI	AATT	8 cut(s)	17, 65, 249, 320, 378, 491, 584, 651
MlyI	GAGTC	2 cut(s)	473, 750
MmeI	TCCRAC	1 cut(s)	181
MseI	TTAA	3 cut(s)	20, 621, 654
MslI	CAYNNNNRTG	1 cut(s)	569
MspA1I	CMGCKG	1 cut(s)	758
MwoI	GCNNNNNNNGC	3 cut(s)	122, 755, 758
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	3 cut(s)	9, 163, 168
NlaIII	CATG	2 cut(s)	181, 568
NlaIV	GGNNCC	2 cut(s)	155, 733
PciSI	GCTCTTC	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	542
PkrI	GCNGC	7 cut(s)	29, 105, 532, 751, 754, 757, 760
PleI	GAGTC	2 cut(s)	472, 749
PpsI	GAGTC	2 cut(s)	472, 749
PshBI	ATTAAT	2 cut(s)	621, 654
PspN4I	GGNNCC	2 cut(s)	155, 733
PspPI	GGNCC	2 cut(s)	81, 732
PstNI	CAGNNNCTG	2 cut(s)	758, 761
PvuII	CAGCTG	1 cut(s)	758
RseI	CAYNNNNRTG	1 cut(s)	569
Rsr2I	CGGWCCG	1 cut(s)	81
RsrII	CGGWCCG	1 cut(s)	81
SapI	GCTCTTC	1 cut(s)	362
SaqAI	TTAA	3 cut(s)	20, 621, 654
SatI	GCNGC	7 cut(s)	28, 104, 531, 750, 753, 756, 759
Sau3AI	GATC	3 cut(s)	9, 163, 168
Sau96I	GGNCC	2 cut(s)	81, 732
SchI	GAGTC	2 cut(s)	473, 750
SfaNI	GCATC	2 cut(s)	184, 595
SinI	GGWCC	2 cut(s)	81, 732
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	2 cut(s)	134, 272
SmoI	CTYRAG	2 cut(s)	134, 272
Sse9I	AATT	8 cut(s)	17, 65, 249, 320, 378, 491, 584, 651
SsiI	CCGC	5 cut(s)	5, 174, 212, 530, 750
SspMI	CTAG	1 cut(s)	687
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	643, 664
TaqI	TCGA	2 cut(s)	12, 525
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	8 cut(s)	17, 65, 249, 320, 378, 491, 584, 651
TauI	GCSGC	2 cut(s)	533, 752
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	3 cut(s)	20, 621, 654
Tru9I	TTAA	3 cut(s)	20, 621, 654
TscAI	CASTG	1 cut(s)	742
TseI	GCWGC	5 cut(s)	27, 103, 752, 755, 758
TspDTI	ATGAA	3 cut(s)	219, 587, 684
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	742
VpaK11BI	GGWCC	2 cut(s)	81, 732
VspI	ATTAAT	2 cut(s)	621, 654
XagI	CCTNNNNNAGG	1 cut(s)	284
XbaI	TCTAGA	1 cut(s)	686
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.