RLG00000020553

mitochondrion organization

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
66193558 .. 66195622
2065 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020553

Sequence Viewer

Length: 1284 bp
ATGCTTTCTCTACTAAACCAAAACAACCACTGGCTACTACGGTCTCCGATCTTCTTCGCGCATCAATCCACCGAGTTGATCGACATCATGACAAACATCGGCGATCCCCTGTTGTCCCAATATGCTTCGTCCCAAGCTAAGAGGTGTCTGAGTGGTGGAGAATCGGTGCCATCGACGGATCCACCGAAATCAGAAACCCTAGAAGTTCTTCTTTCACTCTCAACATTTTCACTCCGCATATCGATACATCACTCACAGCTCCGATCGCCGGTTTCCGGTTGCCAATTGCCCTCAGGGTTAGGAATGGCAGAGCCGAGGGAGGTGAAGATCGTTAATGATGGCGGCGATGGTGGCGATGATTTCTACGACGCTGATCAGACGGCGTCGCTGAGCCGGAAGGTGTCGTCGTTAGAGTGGGAGAAGGGGGAACTGGAGAAAGAGAACAGAGAAACCAAGGAGAAGATAGGCCAACTGACGAAGGAGATTGAGACTTTGAAGAGCGGCGAGAGGGAGATTAAGGAGAAGCTCAGAGAGATGGAGTTGCAGGTGGAGCGGAACGAGGAGGGCAAGAATTTGCTGGAGACTGTTGCCAACCGAGCCATGGAGCTTGAGACTGAGGTCGGTAGGCTTCAACAGGATTTGATCACTGCAATGACTGAAGGCGAGGAGGCCAATACCGAGCTTGCAGAGATGAAGCGAGTGGTGGTTGAGAAGGGGGAGAAAATTGATGGCTTGGAGAAGGAGCTCGAGACTCTGAAGAAATTGAAAGCTGAGAGCGAGAAGAGGGTTAGGGAATTGGAGAGGAATATTGGGGTTCTGGAGGTGAAAGAAATAGAGGAGAGAAGCAAGAGAGTTAGGGCAGAGGAGGAAATGAGAGAGAGGATTGAAGCGAAAGATGGTGAAGTTTGTTTGTTCAAAAAGAAAATTGAGGAGTTGGAATCGGTGATTGGGAAGAATGGTGTTGAACTGCAGAAGTGGATGCAGGGAAAGAGCAATGTTGAGGTAGCGTTGAGGGAATCCGAGGAGAAGTCAAAAGCTATGGAGTTGAAGATGGGACAACTGCAGAAGGATGTGGTGGACGCCGGAATGGTTATTAATGAATTGAAGGAGAAGACTGTTGGGGTCATTAATGGGACTGTGAATGTGAATGAAATGAAGGAGATTTTGGAAGGCGGAAATGAGACGGGATCGAAGGGATTGAGCTTGCCTGTGGTTGCAGGGTCTGCTGGAGCCATTGTTGCTGTGGCGGCTGTTGTCTTTGTGTTGTATGGAAGGCGGAGGTGA

Protein Analysis

428

Amino Acids

47.62

Weight (kDa)

5.09

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 535
Acc36I ACCTGC 1 cut(s) 535
AccB1I GGYRCC 1 cut(s) 166
AccBSI CCGCTC 2 cut(s) 501, 553
AccII CGCG 1 cut(s) 59
AciI CCGC 7 cut(s) 235, 342, 501, 553, 1173, 1247, 1276
AclWI GGATC 4 cut(s) 98, 173, 186, 1195
AcsI RAATTY 1 cut(s) 571
AcuI CTGAAG 2 cut(s) 678, 776
AcyI GRCGYC 2 cut(s) 383, 1080
AfiI CCNNNNNNNGG 3 cut(s) 268, 275, 601
AgsI TTSAA 8 cut(s) 496, 632, 766, 887, 916, 965, 1048, 1105
AjuI GAANNNNNNNTTGG 4 cut(s) 930, 962, 1148, 1180
AluBI AGCT 9 cut(s) 137, 259, 526, 607, 682, 745, 770, 1037, 1203
AluI AGCT 9 cut(s) 137, 259, 526, 607, 682, 745, 770, 1037, 1203
Alw21I GWGCWC 1 cut(s) 747
Alw26I GTCTC 6 cut(s) 48, 482, 575, 605, 743, 1175
AlwI GGATC 4 cut(s) 98, 173, 186, 1195
AlwNI CAGNNNCTG 1 cut(s) 1223
Ama87I CYCGRG 1 cut(s) 746
AoxI GGCC 2 cut(s) 466, 669
ApoI RAATTY 1 cut(s) 571
AseI ATTAAT 2 cut(s) 1095, 1128
Asp700I GAANNNNTTC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 61
AsuHPI GGTGA 4 cut(s) 334, 835, 911, 955
AvaI CYCGRG 1 cut(s) 746
AxyI CCTNAGG 1 cut(s) 292
BamHI GGATCC 1 cut(s) 178
BanI GGYRCC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 747
BbsI GAAGAC 1 cut(s) 1118
Bbv12I GWGCWC 1 cut(s) 747
BccI CCATC 7 cut(s) 178, 332, 341, 529, 722, 890, 1045
BceAI ACGGC 1 cut(s) 396
BclI TGATCA 2 cut(s) 373, 642
BcoDI GTCTC 6 cut(s) 48, 482, 575, 605, 743, 1175
BfaI CTAG 1 cut(s) 200
BfmI CTRYAG 2 cut(s) 968, 1061
BfuAI ACCTGC 1 cut(s) 535
BisI GCNGC 3 cut(s) 343, 502, 1248
BlpI GCTNAGC 1 cut(s) 389
BlsI GCNGC 3 cut(s) 344, 503, 1249
BmeT110I CYCGRG 1 cut(s) 746
BmiI GGNNCC 3 cut(s) 168, 180, 1231
BmsI GCATC 2 cut(s) 70, 969
BoxI GACNNNNGTC 1 cut(s) 617
BpiI GAAGAC 1 cut(s) 1118
BpmI CTGGAG 4 cut(s) 452, 599, 839, 1248
Bpu1102I GCTNAGC 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 629
Bsa29I ATCGAT 1 cut(s) 242
BsaBI GATNNNNATC 1 cut(s) 83
BsaHI GRCGYC 2 cut(s) 383, 1080
BsaI GGTCTC 1 cut(s) 48
BsaJI CCNNGG 4 cut(s) 314, 453, 600, 1020
BsaWI WCCGGW 1 cut(s) 275
BsaXI ACNNNNNCTCC 4 cut(s) 150, 180, 1221, 1251
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 275, 601
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 2 cut(s) 35, 435
Bse21I CCTNAGG 1 cut(s) 292
Bse3DI GCAATG 2 cut(s) 657, 1000
Bse8I GATNNNNATC 1 cut(s) 83
BseCI ATCGAT 1 cut(s) 242
BseDI CCNNGG 4 cut(s) 314, 453, 600, 1020
BseGI GGATG 2 cut(s) 984, 1075
BseJI GATNNNNATC 1 cut(s) 83
BseLI CCNNNNNNNGG 3 cut(s) 268, 275, 601
BseMI GCAATG 2 cut(s) 657, 1000
BseMII CTCAG 6 cut(s) 140, 306, 380, 541, 606, 762
BseNI ACTGG 2 cut(s) 35, 435
BseRI GAGGAG 6 cut(s) 575, 680, 851, 878, 944, 1037
Bsh1236I CGCG 1 cut(s) 59
Bsh1285I CGRYCG 1 cut(s) 266
BshFI GGCC 2 cut(s) 468, 671
BshNI GGYRCC 1 cut(s) 166
BshVI ATCGAT 1 cut(s) 242
BsiEI CGRYCG 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 747
BsiHKCI CYCGRG 1 cut(s) 746
BsiSI CCGG 4 cut(s) 269, 276, 394, 1083
BslFI GGGAC 4 cut(s) 100, 115, 1068, 1147
BslI CCNNNNNNNGG 3 cut(s) 268, 275, 601
BsmAI GTCTC 6 cut(s) 48, 482, 575, 605, 743, 1175
BsmBI CGTCTC 1 cut(s) 1175
BsmFI GGGAC 4 cut(s) 100, 115, 1068, 1147
BsnI GGCC 2 cut(s) 468, 671
Bso31I GGTCTC 1 cut(s) 48
BsoBI CYCGRG 1 cut(s) 746
Bsp1286I GDGCHC 1 cut(s) 747
Bsp143I GATC 9 cut(s) 48, 78, 103, 178, 263, 327, 373, 642, 1187
Bsp1720I GCTNAGC 1 cut(s) 389
Bsp19I CCATGG 1 cut(s) 600
BspACI CCGC 7 cut(s) 235, 342, 501, 553, 1173, 1247, 1276
BspANI GGCC 2 cut(s) 468, 671
BspCNI CTCAG 6 cut(s) 141, 305, 381, 540, 607, 763
BspDI ATCGAT 1 cut(s) 242
BspFNI CGCG 1 cut(s) 59
BspHI TCATGA 1 cut(s) 87
BspLI GGNNCC 3 cut(s) 168, 180, 1231
BspMAI CTGCAG 2 cut(s) 972, 1065
BspMI ACCTGC 1 cut(s) 535
BspPI GGATC 4 cut(s) 98, 173, 186, 1195
BspQI GCTCTTC 1 cut(s) 491
BspT107I GGYRCC 1 cut(s) 166
BspTNI GGTCTC 1 cut(s) 48
BsrBI CCGCTC 2 cut(s) 501, 553
BsrDI GCAATG 2 cut(s) 657, 1000
BsrFI RCCGGY 1 cut(s) 268
BsrI ACTGG 2 cut(s) 35, 435
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 4 cut(s) 314, 453, 600, 1020
BssMI GATC 9 cut(s) 48, 78, 103, 178, 263, 327, 373, 642, 1187
BssNI GRCGYC 2 cut(s) 383, 1080
BssT1I CCWWGG 2 cut(s) 453, 600
Bst4CI ACNGT 4 cut(s) 42, 586, 1117, 1138
Bst6I CTCTTC 2 cut(s) 491, 776
BstACI GRCGYC 2 cut(s) 383, 1080
BstAPI GCANNNNNTGC 1 cut(s) 1223
BstC8I GCNNGC 2 cut(s) 684, 1205
BstDEI CTNAG 7 cut(s) 138, 149, 292, 389, 527, 615, 771
BstDSI CCRYGG 1 cut(s) 600
BstF5I GGATG 2 cut(s) 984, 1075
BstFNI CGCG 1 cut(s) 59
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 9 cut(s) 51, 81, 106, 181, 266, 330, 376, 645, 1190
BstMAI GTCTC 6 cut(s) 48, 482, 575, 605, 743, 1175
BstMBI GATC 9 cut(s) 48, 78, 103, 178, 263, 327, 373, 642, 1187
BstMCI CGRYCG 1 cut(s) 266
BstMWI GCNNNNNNNGC 7 cut(s) 265, 351, 550, 596, 1223, 1238, 1247
BstPAI GACNNNNGTC 1 cut(s) 617
BstSFI CTRYAG 2 cut(s) 968, 1061
BstUI CGCG 1 cut(s) 59
BstV2I GAAGAC 1 cut(s) 1118
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
Bsu15I ATCGAT 1 cut(s) 242
Bsu36I CCTNAGG 1 cut(s) 292
BsuRI GGCC 2 cut(s) 468, 671
BsuTUI ATCGAT 1 cut(s) 242
BtgI CCRYGG 1 cut(s) 600
BtgZI GCGATG 2 cut(s) 360, 369
BtsCI GGATG 2 cut(s) 984, 1075
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 2 cut(s) 28, 645
BveI ACCTGC 1 cut(s) 535
Cac8I GCNNGC 2 cut(s) 684, 1205
CaiI CAGNNNCTG 1 cut(s) 1223
CciI TCATGA 1 cut(s) 87
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 268
ClaI ATCGAT 1 cut(s) 242
CseI GACGC 3 cut(s) 372, 377, 1088
CviAII CATG 2 cut(s) 88, 601
DdeI CTNAG 7 cut(s) 138, 149, 292, 389, 527, 615, 771
DpnI GATC 9 cut(s) 50, 80, 105, 180, 265, 329, 375, 644, 1189
DpnII GATC 9 cut(s) 48, 78, 103, 178, 263, 327, 373, 642, 1187
Eam1104I CTCTTC 2 cut(s) 491, 776
EarI CTCTTC 2 cut(s) 491, 776
EciI GGCGGA 1 cut(s) 1188
Ecl136II GAGCTC 1 cut(s) 745
Eco130I CCWWGG 2 cut(s) 453, 600
Eco24I GRGCYC 1 cut(s) 747
Eco31I GGTCTC 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 745
Eco57I CTGAAG 2 cut(s) 678, 776
Eco81I CCTNAGG 1 cut(s) 292
Eco88I CYCGRG 1 cut(s) 746
EcoICRI GAGCTC 1 cut(s) 745
EcoT14I CCWWGG 2 cut(s) 453, 600
EcoT38I GRGCYC 1 cut(s) 747
ErhI CCWWGG 2 cut(s) 453, 600
Esp3I CGTCTC 1 cut(s) 1175
FaeI CATG 2 cut(s) 91, 604
FaiI YATR 6 cut(s) 89, 123, 239, 602, 1040, 1269
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FaqI GGGAC 4 cut(s) 100, 115, 1068, 1147
FatI CATG 2 cut(s) 87, 600
FbaI TGATCA 2 cut(s) 373, 642
Fnu4HI GCNGC 3 cut(s) 343, 502, 1248
FokI GGATG 2 cut(s) 991, 1082
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 3 cut(s) 343, 502, 1248
FspBI CTAG 1 cut(s) 200
GlaI GCGC 1 cut(s) 60
GluI GCNGC 3 cut(s) 343, 502, 1248
GsuI CTGGAG 4 cut(s) 452, 599, 839, 1248
HaeIII GGCC 2 cut(s) 468, 671
HapII CCGG 4 cut(s) 269, 276, 394, 1083
HgaI GACGC 3 cut(s) 372, 377, 1088
HhaI GCGC 1 cut(s) 61
Hin1I GRCGYC 2 cut(s) 383, 1080
Hin1II CATG 2 cut(s) 91, 604
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 4 cut(s) 161, 751, 938, 1016
HpaII CCGG 4 cut(s) 269, 276, 394, 1083
HphI GGTGA 4 cut(s) 334, 835, 911, 955
Hpy166II GTNNAC 1 cut(s) 1078
Hpy188I TCNGA 8 cut(s) 48, 150, 193, 263, 378, 530, 756, 1021
Hpy188III TCNNGA 3 cut(s) 88, 748, 818
Hpy8I GTNNAC 1 cut(s) 1078
Hpy99I CGWCG 4 cut(s) 178, 371, 388, 409
HpyCH4III ACNGT 4 cut(s) 42, 586, 1117, 1138
HpyCH4V TGCA 7 cut(s) 544, 650, 686, 970, 982, 1063, 1217
HpyF10VI GCNNNNNNNGC 7 cut(s) 265, 351, 550, 596, 1223, 1238, 1247
HpyF3I CTNAG 7 cut(s) 138, 149, 292, 389, 527, 615, 771
Hsp92I GRCGYC 2 cut(s) 383, 1080
Hsp92II CATG 2 cut(s) 91, 604
HspAI GCGC 1 cut(s) 59
Ksp22I TGATCA 2 cut(s) 373, 642
Kzo9I GATC 9 cut(s) 48, 78, 103, 178, 263, 327, 373, 642, 1187
LguI GCTCTTC 1 cut(s) 491
LmnI GCTCC 5 cut(s) 264, 550, 604, 742, 1229
LweI GCATC 2 cut(s) 70, 969
MaeI CTAG 1 cut(s) 200
MalI GATC 9 cut(s) 50, 80, 105, 180, 265, 329, 375, 644, 1189
MbiI CCGCTC 2 cut(s) 501, 553
MboI GATC 9 cut(s) 48, 78, 103, 178, 263, 327, 373, 642, 1187
MfeI CAATTG 1 cut(s) 284
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 747
MluCI AATT 7 cut(s) 284, 571, 723, 761, 794, 924, 1100
MlyI GAGTC 1 cut(s) 745
MmeI TCCRAC 1 cut(s) 915
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 4 cut(s) 333, 516, 1095, 1128
MslI CAYNNNNRTG 1 cut(s) 650
MspI CCGG 4 cut(s) 269, 276, 394, 1083
MunI CAATTG 1 cut(s) 284
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 7 cut(s) 265, 351, 550, 596, 1223, 1238, 1247
NcoI CCATGG 1 cut(s) 600
NdeII GATC 9 cut(s) 48, 78, 103, 178, 263, 327, 373, 642, 1187
NlaIII CATG 2 cut(s) 91, 604
NlaIV GGNNCC 3 cut(s) 168, 180, 1231
NmeAIII GCCGAG 1 cut(s) 339
PaeR7I CTCGAG 1 cut(s) 746
PagI TCATGA 1 cut(s) 87
PaqCI CACCTGC 1 cut(s) 535
PciSI GCTCTTC 1 cut(s) 491
PcsI WCGNNNNNNNCGW 2 cut(s) 170, 182
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 3 cut(s) 161, 938, 1016
PflFI GACNNNGTC 1 cut(s) 382
PkrI GCNGC 3 cut(s) 344, 503, 1249
Ple19I CGATCG 1 cut(s) 266
PleI GAGTC 1 cut(s) 745
PpsI GAGTC 1 cut(s) 745
PshAI GACNNNNGTC 1 cut(s) 617
PshBI ATTAAT 2 cut(s) 1095, 1128
Psp124BI GAGCTC 1 cut(s) 747
PspN4I GGNNCC 3 cut(s) 168, 180, 1231
PstI CTGCAG 2 cut(s) 972, 1065
PstNI CAGNNNCTG 1 cut(s) 1223
PsuI RGATCY 1 cut(s) 178
PsyI GACNNNGTC 1 cut(s) 382
PvuI CGATCG 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 650
SacI GAGCTC 1 cut(s) 747
SapI GCTCTTC 1 cut(s) 491
SaqAI TTAA 4 cut(s) 333, 516, 1095, 1128
SatI GCNGC 3 cut(s) 343, 502, 1248
Sau3AI GATC 9 cut(s) 48, 78, 103, 178, 263, 327, 373, 642, 1187
SchI GAGTC 1 cut(s) 745
SduI GDGCHC 1 cut(s) 747
SfaNI GCATC 2 cut(s) 70, 969
SfcI CTRYAG 2 cut(s) 968, 1061
Sfr274I CTCGAG 1 cut(s) 746
SlaI CTCGAG 1 cut(s) 746
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 2 cut(s) 608, 746
SmoI CTYRAG 2 cut(s) 608, 746
Sse9I AATT 7 cut(s) 284, 571, 723, 761, 794, 924, 1100
SsiI CCGC 7 cut(s) 235, 342, 501, 553, 1173, 1247, 1276
SspI AATATT 1 cut(s) 808
SspMI CTAG 1 cut(s) 200
SstI GAGCTC 1 cut(s) 747
StyI CCWWGG 2 cut(s) 453, 600
TaaI ACNGT 4 cut(s) 42, 586, 1117, 1138
TaqI TCGA 5 cut(s) 81, 173, 242, 747, 1190
TasI AATT 7 cut(s) 284, 571, 723, 761, 794, 924, 1100
TauI GCSGC 3 cut(s) 345, 504, 1250
TfiI GAWTC 3 cut(s) 161, 938, 1016
Tru1I TTAA 4 cut(s) 333, 516, 1095, 1128
Tru9I TTAA 4 cut(s) 333, 516, 1095, 1128
TscAI CASTG 2 cut(s) 35, 652
TspDTI ATGAA 4 cut(s) 707, 1113, 1164, 1169
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 2 cut(s) 35, 652
Tth111I GACNNNGTC 1 cut(s) 382
VspI ATTAAT 2 cut(s) 1095, 1128
XapI RAATTY 1 cut(s) 571
XcmI CCANNNNNNNNNTGG 2 cut(s) 598, 1240
XhoI CTCGAG 1 cut(s) 746
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.