Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0012364

Physical Location & Seq

Genomic Coordinates Forward (+)

12551153 .. 12552453

Gene Structure 1301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1139500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAGTTGGAGATCGAACGGACTGAGGAGGGGAAAGATGTGCTGGAATCGGTTGCGAATAGAGCGATCGAGCTTGAGACTGAGGTAGCGAGGCTCCAACACGATCTGATCTCCGCCATGGCCGAAGGGGAGGACGCGAATCACGAAGTTGCGGAGCTGAAGCGTGAGTTGGAAGAGAAGGGGGAGAAAATTGATAGCTTGGAGAAGGAGGTCGAGAGCCTGAAGAAGGCGAAGGCTGATAGCGAGAAGAGAGTTAGGGAATTGGAGAGGAAGATTGGGGTTTTGGAAGTGAAGGAGACTGAGGAGAAGAGCAAGAAAATTAGGGTTGAGGAGGAGATGAGAGAGAGACTTGATGAGAAAGAGAGCGAGCTTATCTTGTTCAAGAAGAAAGTGGAGGATTTGGAGTCAGTTGTTGCGAAGAACAGTGCTGAATTCGGGAAGAGAGTGAACGAGAGGGTCAATGTCGAGGCAGCGCTGAGGGAATCGGAGGATAAGTGCAGAGCCATGGAAATGAAGATGGGACAATTACAGAAGGACGTCATGGATGCTGAGAAGGTTATTACTGGATTGAAGGAGAGGACTGTTGAGGCCATTAATGGTACTGCGAATGAAATGAAGGAGATTCTGGAAGGTGGAGAGACGGGGTCGAAAGGATTGAGCTTGCCAGTTGTGGCAGGGTCTACTGGGGTCGTTGTTGCCGCGGCAGCTGCTGTTGTCTATGTGTTGTATGTAAGGCAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009536 GO:0009987 GO:0016020 GO:0016043 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0042579 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.74

Weight (kDa)

4.94

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06530
malus_domestica	MD09G1151900.v1.1 MD17G1139500.v1.1
prunus_persica	Prupe.3G172600_v2.0.a1 Prupe.3G172600_v2.0.a1
pyrus_communis	pycom09g07140 pycom17g13260
rosa_chinensis	RchiOBHm_Chr2g0151481
rosa_laevigata	RLG00000020553
rosa_multiflora	Rmu_co8152832.1_g000001 Rmu_sc0000940.1_g000018 Rmu_sc0021528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096430
rosa_rugosa	Rorug02G0426500
rosa_samantha	Rh2AG487200 Rh2BG499600 Rh2CG473600 Rh2DG510800
rosa_wichuraiana	Rw2G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	540
AccI	GTMKAC	1 cut(s)	680
AccII	CGCG	2 cut(s)	137, 701
AciI	CCGC	4 cut(s)	114, 152, 699, 701
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	2 cut(s)	179, 242
AcyI	GRCGYC	1 cut(s)	537
AfaI	GTAC	1 cut(s)	601
AfeI	AGCGCT	1 cut(s)	474
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	2 cut(s)	382, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AluBI	AGCT	6 cut(s)	73, 157, 198, 370, 660, 707
AluI	AGCT	6 cut(s)	73, 157, 198, 370, 660, 707
Alw26I	GTCTC	4 cut(s)	71, 290, 340, 632
AlwNI	CAGNNNCTG	1 cut(s)	710
Aor51HI	AGCGCT	1 cut(s)	474
AoxI	GGCC	2 cut(s)	120, 588
ApeKI	GCWGC	3 cut(s)	470, 704, 707
ApoI	RAATTY	1 cut(s)	431
AseI	ATTAAT	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	475
BbvCI	CCTCAGC	1 cut(s)	476
BbvI	GCAGC	3 cut(s)	482, 694, 716
BccI	CCATC	1 cut(s)	511
BcoDI	GTCTC	4 cut(s)	71, 290, 340, 632
BfoI	RGCGCY	1 cut(s)	476
BisI	GCNGC	5 cut(s)	471, 699, 702, 705, 708
BlsI	GCNGC	5 cut(s)	472, 700, 703, 706, 709
BmiI	GGNNCC	1 cut(s)	95
BmrI	ACTGGG	1 cut(s)	693
BmsI	GCATC	1 cut(s)	535
BmuI	ACTGGG	1 cut(s)	693
Bpu10I	CCTNAGC	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	537
BsaJI	CCNNGG	3 cut(s)	117, 504, 699
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	3 cut(s)	568, 665, 688
BseDI	CCNNGG	3 cut(s)	117, 504, 699
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	5 cut(s)	15, 72, 291, 467, 540
BseNI	ACTGG	3 cut(s)	568, 665, 688
BseRI	GAGGAG	4 cut(s)	41, 317, 344, 347
BseXI	GCAGC	3 cut(s)	482, 694, 716
BsgI	GTGCAG	1 cut(s)	517
Bsh1236I	CGCG	2 cut(s)	137, 701
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	122, 590
BsiEI	CGRYCG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	4 cut(s)	71, 290, 340, 632
BsmBI	CGTCTC	1 cut(s)	632
BsmFI	GGGAC	1 cut(s)	534
BsnI	GGCC	2 cut(s)	122, 590
Bsp143I	GATC	4 cut(s)	12, 66, 103, 108
Bsp19I	CCATGG	2 cut(s)	117, 504
BspACI	CCGC	4 cut(s)	114, 152, 699, 701
BspANI	GGCC	2 cut(s)	122, 590
BspCNI	CTCAG	5 cut(s)	16, 73, 292, 468, 541
BspFNI	CGCG	2 cut(s)	137, 701
BspLI	GGNNCC	1 cut(s)	95
BspQI	GCTCTTC	1 cut(s)	302
BsrI	ACTGG	3 cut(s)	568, 665, 688
BssECI	CCNNGG	3 cut(s)	117, 504, 699
BssMI	GATC	4 cut(s)	12, 66, 103, 108
BssNI	GRCGYC	1 cut(s)	537
BssT1I	CCWWGG	2 cut(s)	117, 504
Bst4CI	ACNGT	2 cut(s)	425, 583
Bst6I	CTCTTC	4 cut(s)	168, 242, 302, 434
BstACI	GRCGYC	1 cut(s)	537
BstC8I	GCNNGC	2 cut(s)	368, 662
BstDEI	CTNAG	5 cut(s)	24, 81, 300, 476, 549
BstDSI	CCRYGG	3 cut(s)	117, 504, 699
BstENI	CCTNNNNNAGG	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	550
BstFNI	CGCG	2 cut(s)	137, 701
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	4 cut(s)	15, 69, 106, 111
BstMAI	GTCTC	4 cut(s)	71, 290, 340, 632
BstMBI	GATC	4 cut(s)	12, 66, 103, 108
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 704, 707
BstUI	CGCG	2 cut(s)	137, 701
BstV1I	GCAGC	3 cut(s)	482, 694, 716
BsuRI	GGCC	2 cut(s)	122, 590
BtgI	CCRYGG	3 cut(s)	117, 504, 699
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	430
Cac8I	GCNNGC	2 cut(s)	368, 662
CaiI	CAGNNNCTG	1 cut(s)	710
CfoI	GCGC	1 cut(s)	475
Cfr42I	CCGCGG	1 cut(s)	702
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	600
CviAII	CATG	3 cut(s)	118, 505, 541
CviQI	GTAC	1 cut(s)	600
DdeI	CTNAG	5 cut(s)	24, 81, 300, 476, 549
DpnI	GATC	4 cut(s)	14, 68, 105, 110
DpnII	GATC	4 cut(s)	12, 66, 103, 108
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	4 cut(s)	168, 242, 302, 434
EarI	CTCTTC	4 cut(s)	168, 242, 302, 434
EciI	GGCGGA	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	117, 504
Eco47III	AGCGCT	1 cut(s)	474
Eco57I	CTGAAG	2 cut(s)	179, 242
EcoNI	CCTNNNNNAGG	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	431
EcoT14I	CCWWGG	2 cut(s)	117, 504
ErhI	CCWWGG	2 cut(s)	117, 504
Esp3I	CGTCTC	1 cut(s)	632
FaeI	CATG	3 cut(s)	121, 508, 544
FaiI	YATR	5 cut(s)	119, 506, 542, 720, 729
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	3 cut(s)	117, 504, 540
FblI	GTMKAC	1 cut(s)	680
Fnu4HI	GCNGC	5 cut(s)	471, 699, 702, 705, 708
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	5 cut(s)	471, 699, 702, 705, 708
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	5 cut(s)	471, 699, 702, 705, 708
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	2 cut(s)	122, 590
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	537
Hin1II	CATG	3 cut(s)	121, 508, 544
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HinfI	GANTC	5 cut(s)	47, 139, 404, 482, 622
Hpy166II	GTNNAC	2 cut(s)	448, 681
Hpy188I	TCNGA	2 cut(s)	108, 487
Hpy188III	TCNNGA	5 cut(s)	143, 214, 382, 436, 626
Hpy8I	GTNNAC	2 cut(s)	448, 681
HpyCH4III	ACNGT	2 cut(s)	425, 583
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	1 cut(s)	498
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 704, 707
HpyF3I	CTNAG	5 cut(s)	24, 81, 300, 476, 549
HpySE526I	ACGT	1 cut(s)	537
Hsp92I	GRCGYC	1 cut(s)	537
Hsp92II	CATG	3 cut(s)	121, 508, 544
HspAI	GCGC	1 cut(s)	473
KspI	CCGCGG	1 cut(s)	702
Kzo9I	GATC	4 cut(s)	12, 66, 103, 108
LguI	GCTCTTC	1 cut(s)	302
LmnI	GCTCC	2 cut(s)	99, 154
LpnPI	CCDG	7 cut(s)	29, 233, 549, 611, 660, 669, 678
Lsp1109I	GCAGC	3 cut(s)	482, 694, 716
LweI	GCATC	1 cut(s)	535
MaeII	ACGT	1 cut(s)	537
MalI	GATC	4 cut(s)	14, 68, 105, 110
MboI	GATC	4 cut(s)	12, 66, 103, 108
MboII	GAAGA	9 cut(s)	185, 235, 259, 283, 319, 397, 430, 451, 526
MluCI	AATT	5 cut(s)	189, 260, 318, 431, 524
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	2 cut(s)	121, 150
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	1 cut(s)	509
MspA1I	CMGCKG	2 cut(s)	701, 707
MvnI	CGCG	2 cut(s)	137, 701
MwoI	GCNNNNNNNGC	3 cut(s)	62, 704, 707
NcoI	CCATGG	2 cut(s)	117, 504
NdeII	GATC	4 cut(s)	12, 66, 103, 108
NlaIII	CATG	3 cut(s)	121, 508, 544
NlaIV	GGNNCC	1 cut(s)	95
PciSI	GCTCTTC	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	4 cut(s)	47, 139, 482, 622
PflFI	GACNNNGTC	1 cut(s)	643
PkrI	GCNGC	5 cut(s)	472, 700, 703, 706, 709
Ple19I	CGATCG	1 cut(s)	69
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PshBI	ATTAAT	1 cut(s)	594
PspN4I	GGNNCC	1 cut(s)	95
PstNI	CAGNNNCTG	1 cut(s)	710
PsyI	GACNNNGTC	1 cut(s)	643
PvuI	CGATCG	1 cut(s)	69
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	1 cut(s)	601
RsaNI	GTAC	1 cut(s)	600
RseI	CAYNNNNRTG	1 cut(s)	509
SacII	CCGCGG	1 cut(s)	702
SapI	GCTCTTC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	5 cut(s)	471, 699, 702, 705, 708
Sau3AI	GATC	4 cut(s)	12, 66, 103, 108
SchI	GAGTC	1 cut(s)	413
SfaNI	GCATC	1 cut(s)	535
Sfr303I	CCGCGG	1 cut(s)	702
SgrBI	CCGCGG	1 cut(s)	702
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	5 cut(s)	189, 260, 318, 431, 524
SsiI	CCGC	4 cut(s)	114, 152, 699, 701
StyI	CCWWGG	2 cut(s)	117, 504
TaaI	ACNGT	2 cut(s)	425, 583
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	5 cut(s)	15, 69, 213, 465, 647
TasI	AATT	5 cut(s)	189, 260, 318, 431, 524
TauI	GCSGC	2 cut(s)	701, 704
TfiI	GAWTC	4 cut(s)	47, 139, 482, 622
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	3 cut(s)	470, 704, 707
TspDTI	ATGAA	3 cut(s)	527, 624, 629
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	430
Tth111I	GACNNNGTC	1 cut(s)	643
VspI	ATTAAT	1 cut(s)	594
XagI	CCTNNNNNAGG	1 cut(s)	224
XapI	RAATTY	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	680
ZraI	GACGTC	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.