Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0012364

Physical Location & Seq

Genomic Coordinates Reverse (-)

65399236 .. 65401546

Gene Structure 2311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G039930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCAGAGCCGAGGGAGGTGAAGATCGTTAATGATGGCGGCGATGGCGGCGATGATTTCTACGACGCTGATCAGACGGCGTCGCTGAGCCGGAAGGTGTCGTCGTTAGAGTGGGAGAAGGGGGAACTGGAGAAAGAGAACAGAGAAACCAAGGAGAAGATAGGCCAACTGACGAAGGAGATTGAGACTTTGAAGAGCGGCGAGAGGGAGATGAAGGACAAGCTCAGGGAGATGGAGTTGCAGGTGGAGCGGAACGAGGAGGGCAAGAATTTGCTGGAGACTGTTGCCAACCGAGCCATGGAGCTTGAGACTGAGGTCGGTAGGCTTCAACAGGATTTGATCACTGCAATCACTGAAGGCGAGGAGGCCAATACCGAGCTTGCGGAGATGAAGCGAGTGCTGGTTGAGAAGGGGGAGAAAATTGATGGCTTGGAGAAGGAGCTTGAGACTCTGAAGAAATTGAAAGCTGAGAGCGAGAAGAGGGTTAGGGAATTGGAGAGGAATATTGGGGTTCTGGAGGTGAAGGAAATAGAGGAGAGGAGCAAGAGGGTTAGGGCGGAGGAGGAAATGAGAGAGAGGCTTGAAGCGAAAGATGGTGAAGTTTGTTTGTTCAAAAAGAAAATTGAGGAGTTGGAATCGGTGATTGGGAAGAATGGTGTTGAACTGCAGAAGTGGATGCAGGGAAAGAGCAATGTTGAGGTAGCGTTGAGGGAATCCGAGGAGAAGTCAAAAGCTATGGAGTTGAAGATGGGACAACTGCAGAAGGATGTGGTGGACGCCGGAAGGGTTATTAATGAATTGAAGGAGAAGACTGTTGGGGTCATTAATGGGACTGTGAATGAAATGAAGGAGATTTTGGAAGGCGGAAATGAGACGGGATCAAAGGGATTGAGCTTGCCTGTGGTTGCAGGGTCTGCTGGAGCCATTGTTGCTGTGGCGGCTGTTGTCTTCGTGTTGTATGGAAGGCGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0006996 GO:0007005 GO:0007031 GO:0008150 GO:0009536 GO:0009987 GO:0016020 GO:0016043 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0042579 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

36.44

Weight (kDa)

4.99

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tropomyosin	PF00261	51 - 272	8.1e-06	Tropomyosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06530
malus_domestica	MD09G1151900.v1.1 MD17G1139500.v1.1
prunus_persica	Prupe.3G172600_v2.0.a1 Prupe.3G172600_v2.0.a1
pyrus_communis	pycom09g07140 pycom17g13260
rosa_chinensis	RchiOBHm_Chr2g0151481
rosa_laevigata	RLG00000020553
rosa_multiflora	Rmu_co8152832.1_g000001 Rmu_sc0000940.1_g000018 Rmu_sc0021528.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096430
rosa_rugosa	Rorug02G0426500
rosa_samantha	Rh2AG487200 Rh2BG499600 Rh2CG473600 Rh2DG510800
rosa_wichuraiana	Rw2G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	232
Acc36I	ACCTGC	1 cut(s)	232
AccBSI	CCGCTC	2 cut(s)	198, 250
AciI	CCGC	9 cut(s)	39, 48, 198, 250, 383, 557, 864, 938, 967
AclWI	GGATC	1 cut(s)	886
AcsI	RAATTY	1 cut(s)	268
AcuI	CTGAAG	2 cut(s)	375, 473
AcyI	GRCGYC	2 cut(s)	80, 777
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	8 cut(s)	193, 329, 463, 584, 613, 662, 745, 802
AjuI	GAANNNNNNNTTGG	4 cut(s)	627, 659, 839, 871
AluBI	AGCT	7 cut(s)	223, 304, 379, 442, 467, 734, 894
AluI	AGCT	7 cut(s)	223, 304, 379, 442, 467, 734, 894
Alw26I	GTCTC	5 cut(s)	179, 272, 302, 440, 866
AlwI	GGATC	1 cut(s)	886
AlwNI	CAGNNNCTG	1 cut(s)	914
AoxI	GGCC	2 cut(s)	163, 366
ApoI	RAATTY	1 cut(s)	268
AseI	ATTAAT	2 cut(s)	792, 825
AsuHPI	GGTGA	4 cut(s)	31, 532, 608, 652
BbsI	GAAGAC	2 cut(s)	815, 940
BccI	CCATC	6 cut(s)	29, 38, 226, 419, 587, 742
BceAI	ACGGC	1 cut(s)	93
BclI	TGATCA	2 cut(s)	70, 339
BcoDI	GTCTC	5 cut(s)	179, 272, 302, 440, 866
BfmI	CTRYAG	2 cut(s)	665, 758
BfuAI	ACCTGC	1 cut(s)	232
BisI	GCNGC	4 cut(s)	40, 49, 199, 939
BlpI	GCTNAGC	1 cut(s)	86
BlsI	GCNGC	4 cut(s)	41, 50, 200, 940
BmiI	GGNNCC	1 cut(s)	922
BmsI	GCATC	1 cut(s)	666
BoxI	GACNNNNGTC	1 cut(s)	314
BpiI	GAAGAC	2 cut(s)	815, 940
BpmI	CTGGAG	4 cut(s)	149, 296, 536, 939
Bpu10I	CCTNAGC	1 cut(s)	224
Bpu1102I	GCTNAGC	1 cut(s)	86
BpuEI	CTTGAG	2 cut(s)	326, 464
BsaHI	GRCGYC	2 cut(s)	80, 777
BsaJI	CCNNGG	4 cut(s)	11, 150, 297, 717
BsaXI	ACNNNNNCTCC	4 cut(s)	221, 251, 912, 942
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	697
BseDI	CCNNGG	4 cut(s)	11, 150, 297, 717
BseGI	GGATG	2 cut(s)	681, 772
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	4 cut(s)	77, 238, 303, 459
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	7 cut(s)	272, 377, 548, 553, 575, 641, 734
BshFI	GGCC	2 cut(s)	165, 368
BsiSI	CCGG	2 cut(s)	91, 780
BslFI	GGGAC	2 cut(s)	765, 844
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	5 cut(s)	179, 272, 302, 440, 866
BsmBI	CGTCTC	1 cut(s)	866
BsmFI	GGGAC	2 cut(s)	765, 844
BsnI	GGCC	2 cut(s)	165, 368
Bsp143I	GATC	4 cut(s)	24, 70, 339, 878
Bsp1720I	GCTNAGC	1 cut(s)	86
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	9 cut(s)	39, 48, 198, 250, 383, 557, 864, 938, 967
BspANI	GGCC	2 cut(s)	165, 368
BspCNI	CTCAG	4 cut(s)	78, 237, 304, 460
BspLI	GGNNCC	1 cut(s)	922
BspMAI	CTGCAG	2 cut(s)	669, 762
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	886
BspQI	GCTCTTC	1 cut(s)	188
BsrBI	CCGCTC	2 cut(s)	198, 250
BsrDI	GCAATG	1 cut(s)	697
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	4 cut(s)	11, 150, 297, 717
BssMI	GATC	4 cut(s)	24, 70, 339, 878
BssNI	GRCGYC	2 cut(s)	80, 777
BssT1I	CCWWGG	2 cut(s)	150, 297
Bst4CI	ACNGT	3 cut(s)	283, 814, 835
Bst6I	CTCTTC	2 cut(s)	188, 473
BstACI	GRCGYC	2 cut(s)	80, 777
BstAPI	GCANNNNNTGC	1 cut(s)	914
BstC8I	GCNNGC	2 cut(s)	381, 896
BstDEI	CTNAG	4 cut(s)	86, 224, 312, 468
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	2 cut(s)	681, 772
BstKTI	GATC	4 cut(s)	27, 73, 342, 881
BstMAI	GTCTC	5 cut(s)	179, 272, 302, 440, 866
BstMBI	GATC	4 cut(s)	24, 70, 339, 878
BstMWI	GCNNNNNNNGC	7 cut(s)	45, 48, 247, 293, 914, 929, 938
BstPAI	GACNNNNGTC	1 cut(s)	314
BstSFI	CTRYAG	2 cut(s)	665, 758
BstV2I	GAAGAC	2 cut(s)	815, 940
BsuRI	GGCC	2 cut(s)	165, 368
BtgI	CCRYGG	1 cut(s)	297
BtgZI	GCGATG	2 cut(s)	57, 66
BtsCI	GGATG	2 cut(s)	681, 772
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	342, 351
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	381, 896
CaiI	CAGNNNCTG	1 cut(s)	914
CseI	GACGC	3 cut(s)	69, 74, 785
CviAII	CATG	1 cut(s)	298
DdeI	CTNAG	4 cut(s)	86, 224, 312, 468
DpnI	GATC	4 cut(s)	26, 72, 341, 880
DpnII	GATC	4 cut(s)	24, 70, 339, 878
Eam1104I	CTCTTC	2 cut(s)	188, 473
EarI	CTCTTC	2 cut(s)	188, 473
EciI	GGCGGA	2 cut(s)	572, 879
Eco130I	CCWWGG	2 cut(s)	150, 297
Eco57I	CTGAAG	2 cut(s)	375, 473
EcoT14I	CCWWGG	2 cut(s)	150, 297
ErhI	CCWWGG	2 cut(s)	150, 297
Esp3I	CGTCTC	1 cut(s)	866
FaeI	CATG	1 cut(s)	301
FaiI	YATR	3 cut(s)	299, 737, 960
FaqI	GGGAC	2 cut(s)	765, 844
FatI	CATG	1 cut(s)	297
FbaI	TGATCA	2 cut(s)	70, 339
Fnu4HI	GCNGC	4 cut(s)	40, 49, 199, 939
FokI	GGATG	2 cut(s)	688, 779
Fsp4HI	GCNGC	4 cut(s)	40, 49, 199, 939
GluI	GCNGC	4 cut(s)	40, 49, 199, 939
GsuI	CTGGAG	4 cut(s)	149, 296, 536, 939
HaeIII	GGCC	2 cut(s)	165, 368
HapII	CCGG	2 cut(s)	91, 780
HgaI	GACGC	3 cut(s)	69, 74, 785
Hin1I	GRCGYC	2 cut(s)	80, 777
Hin1II	CATG	1 cut(s)	301
HinfI	GANTC	3 cut(s)	448, 635, 713
HpaII	CCGG	2 cut(s)	91, 780
HphI	GGTGA	4 cut(s)	31, 532, 608, 652
Hpy166II	GTNNAC	1 cut(s)	775
Hpy188I	TCNGA	3 cut(s)	75, 453, 718
Hpy188III	TCNNGA	1 cut(s)	515
Hpy8I	GTNNAC	1 cut(s)	775
Hpy99I	CGWCG	3 cut(s)	68, 85, 106
HpyCH4III	ACNGT	3 cut(s)	283, 814, 835
HpyCH4V	TGCA	6 cut(s)	241, 347, 667, 679, 760, 908
HpyF10VI	GCNNNNNNNGC	7 cut(s)	45, 48, 247, 293, 914, 929, 938
HpyF3I	CTNAG	4 cut(s)	86, 224, 312, 468
Hsp92I	GRCGYC	2 cut(s)	80, 777
Hsp92II	CATG	1 cut(s)	301
Ksp22I	TGATCA	2 cut(s)	70, 339
Kzo9I	GATC	4 cut(s)	24, 70, 339, 878
LguI	GCTCTTC	1 cut(s)	188
LmnI	GCTCC	5 cut(s)	247, 301, 439, 540, 920
LweI	GCATC	1 cut(s)	666
MalI	GATC	4 cut(s)	26, 72, 341, 880
MbiI	CCGCTC	2 cut(s)	198, 250
MboI	GATC	4 cut(s)	24, 70, 339, 878
MboII	GAAGA	9 cut(s)	34, 169, 205, 466, 490, 661, 757, 820, 940
MluCI	AATT	6 cut(s)	268, 420, 458, 491, 621, 797
MlyI	GAGTC	1 cut(s)	442
MmeI	TCCRAC	1 cut(s)	612
MseI	TTAA	3 cut(s)	30, 792, 825
MspI	CCGG	2 cut(s)	91, 780
MwoI	GCNNNNNNNGC	7 cut(s)	45, 48, 247, 293, 914, 929, 938
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	4 cut(s)	24, 70, 339, 878
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	1 cut(s)	922
NmeAIII	GCCGAG	1 cut(s)	36
PaqCI	CACCTGC	1 cut(s)	232
PciSI	GCTCTTC	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	635, 713
PflFI	GACNNNGTC	1 cut(s)	79
PkrI	GCNGC	4 cut(s)	41, 50, 200, 940
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PshAI	GACNNNNGTC	1 cut(s)	314
PshBI	ATTAAT	2 cut(s)	792, 825
PspN4I	GGNNCC	1 cut(s)	922
PstI	CTGCAG	2 cut(s)	669, 762
PstNI	CAGNNNCTG	1 cut(s)	914
PsyI	GACNNNGTC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	188
SaqAI	TTAA	3 cut(s)	30, 792, 825
SatI	GCNGC	4 cut(s)	40, 49, 199, 939
Sau3AI	GATC	4 cut(s)	24, 70, 339, 878
SchI	GAGTC	1 cut(s)	442
SfaNI	GCATC	1 cut(s)	666
SfcI	CTRYAG	2 cut(s)	665, 758
SmlI	CTYRAG	2 cut(s)	305, 443
SmoI	CTYRAG	2 cut(s)	305, 443
Sse9I	AATT	6 cut(s)	268, 420, 458, 491, 621, 797
SsiI	CCGC	9 cut(s)	39, 48, 198, 250, 383, 557, 864, 938, 967
SspI	AATATT	1 cut(s)	505
StyI	CCWWGG	2 cut(s)	150, 297
TaaI	ACNGT	3 cut(s)	283, 814, 835
TasI	AATT	6 cut(s)	268, 420, 458, 491, 621, 797
TauI	GCSGC	4 cut(s)	42, 51, 201, 941
TfiI	GAWTC	2 cut(s)	635, 713
Tru1I	TTAA	3 cut(s)	30, 792, 825
Tru9I	TTAA	3 cut(s)	30, 792, 825
TscAI	CASTG	2 cut(s)	349, 358
TspDTI	ATGAA	5 cut(s)	227, 404, 810, 855, 860
TspRI	CASTG	2 cut(s)	349, 358
Tth111I	GACNNNGTC	1 cut(s)	79
VspI	ATTAAT	2 cut(s)	792, 825
XapI	RAATTY	1 cut(s)	268
XcmI	CCANNNNNNNNNTGG	2 cut(s)	295, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.